Wall clock time and date at job start Mon Mar 30 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.50697 * 109.47342 * 239.99521 * 2 1 3 5 5 N 1.30400 * 119.29436 * 265.02227 * 4 2 1 6 6 C 1.33787 * 122.03307 * 180.02562 * 5 4 2 7 7 C 1.35647 * 120.40489 * 359.71039 * 6 5 4 8 8 C 1.41988 * 118.60338 * 0.53698 * 7 6 5 9 9 N 1.31475 * 120.91641 * 179.74878 * 8 7 6 10 10 N 1.35664 * 119.28695 * 85.00462 * 4 2 1 11 11 H 0.96993 * 120.31343 * 359.97438 * 10 4 2 12 12 N 1.46907 * 109.46968 * 119.99751 * 2 1 3 13 13 C 1.46845 * 111.00121 * 176.04547 * 12 2 1 14 14 C 1.53035 * 109.52223 * 174.16231 * 13 12 2 15 15 C 1.53115 * 109.28102 * 59.18378 * 14 13 12 16 16 C 1.53127 * 109.15655 * 302.34342 * 15 14 13 17 17 H 1.09004 * 109.50236 * 297.67663 * 16 15 14 18 18 C 1.50699 * 109.50290 * 177.59515 * 16 15 14 19 19 H 1.07998 * 120.00206 * 245.43518 * 18 16 15 20 20 C 1.37882 * 119.99993 * 65.43167 * 18 16 15 21 21 N 1.31517 * 119.99729 * 9.57030 * 20 18 16 22 22 Si 1.86796 * 120.00006 * 189.56473 * 20 18 16 23 23 H 1.48504 * 109.46761 * 94.99652 * 22 20 18 24 24 H 1.48503 * 109.47051 * 214.99060 * 22 20 18 25 25 H 1.48495 * 109.47234 * 334.99544 * 22 20 18 26 26 C 1.46847 * 110.99540 * 51.83709 * 12 2 1 27 27 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47419 * 300.00340 * 1 2 3 29 29 H 1.09003 * 109.46980 * 60.00084 * 1 2 3 30 30 H 1.07989 * 119.79588 * 180.02562 * 6 5 4 31 31 H 1.08010 * 120.69897 * 180.29125 * 7 6 5 32 32 H 0.96997 * 119.99944 * 359.71389 * 9 8 7 33 33 H 1.09005 * 109.46320 * 294.18023 * 13 12 2 34 34 H 1.09005 * 109.45852 * 54.14673 * 13 12 2 35 35 H 1.09006 * 109.49817 * 179.12320 * 14 13 12 36 36 H 1.08995 * 109.50395 * 299.23778 * 14 13 12 37 37 H 1.08998 * 109.52239 * 62.24591 * 15 14 13 38 38 H 1.08993 * 109.52295 * 182.44285 * 15 14 13 39 39 H 0.96997 * 120.00082 * 179.97438 * 21 20 18 40 40 H 1.08994 * 109.46647 * 305.85354 * 26 12 2 41 41 H 1.09000 * 109.46714 * 65.82747 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.3381 -1.9760 -1.1562 6 6 2.7893 -2.6601 -2.2137 7 6 2.9385 -2.0476 -3.4148 8 6 2.6174 -0.6685 -3.5192 9 7 2.7498 -0.0286 -4.6600 10 7 2.1564 -0.0198 -2.3914 11 1 1.9238 0.9211 -2.4285 12 7 2.0196 -0.6925 1.1995 13 6 3.4845 -0.7945 1.1872 14 6 3.9669 -1.3878 2.5128 15 6 3.3419 -2.7725 2.7042 16 6 1.8165 -2.6450 2.6648 17 1 1.4826 -2.0139 3.4885 18 6 1.1939 -4.0113 2.7934 19 1 0.6315 -4.4281 1.9710 20 6 1.3425 -4.7295 3.9610 21 7 1.8607 -4.1553 5.0247 22 14 0.8075 -6.5178 4.0321 23 1 1.9749 -7.3948 3.7612 24 1 0.2648 -6.8188 5.3813 25 1 -0.2424 -6.7614 3.0106 26 6 1.3963 -2.0152 1.3347 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.0313 -3.7076 -2.1117 31 1 3.2980 -2.5965 -4.2728 32 1 3.0746 -0.4977 -5.4444 33 1 3.7967 -1.4393 0.3656 34 1 3.9165 0.1974 1.0546 35 1 5.0532 -1.4779 2.4971 36 1 3.6670 -0.7365 3.3336 37 1 3.6729 -3.4352 1.9047 38 1 3.6485 -3.1805 3.6673 39 1 1.9649 -4.6603 5.8462 40 1 0.3117 -1.9100 1.3094 41 1 1.7183 -2.6543 0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:27 Heat of formation + Delta-G solvation = 74.297094 kcal Electronic energy + Delta-G solvation = -22330.989480 eV Core-core repulsion = 19246.604315 eV Total energy + Delta-G solvation = -3084.385165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26198 -38.41987 -35.26805 -34.81947 -33.26829 -32.24457 -29.88545 -29.44348 -29.16357 -25.40358 -24.65132 -23.74355 -22.98232 -21.26803 -20.49544 -19.01186 -18.07484 -17.48373 -16.83892 -16.13167 -15.37386 -15.18780 -14.91293 -14.70435 -14.28041 -14.12657 -13.24956 -12.96267 -12.82243 -12.64664 -12.45293 -12.04739 -11.81120 -11.62941 -11.41096 -11.10798 -10.86233 -10.67131 -10.63771 -10.41049 -10.16100 -10.02075 -9.74064 -9.47678 -9.23859 -8.91045 -8.65726 -8.24231 -7.75894 -7.57418 -5.94162 -3.94265 0.71707 1.91424 2.56861 3.34268 3.41871 3.44444 3.60543 3.84939 4.42846 4.52674 4.58819 4.83495 5.03125 5.11899 5.20039 5.35256 5.38397 5.57034 5.70376 5.81066 5.83768 5.94220 6.07831 6.10930 6.21728 6.34746 6.40393 6.59615 6.64552 6.75863 6.91386 7.00472 7.25838 7.29608 7.36162 7.64101 7.75035 7.84178 7.96181 8.10641 8.19437 8.22437 8.57835 9.10709 9.68132 11.15157 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.005174 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.512477 B = 5410.823048 C = 5783.134221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.386 3.614 5 N -0.531 5.531 6 C 0.151 3.849 7 C -0.298 4.298 8 C 0.425 3.575 9 N -0.795 5.795 10 N -0.612 5.612 11 H 0.418 0.582 12 N -0.504 5.504 13 C 0.054 3.946 14 C -0.114 4.114 15 C -0.102 4.102 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.509 4.509 19 H 0.053 0.947 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.039 3.961 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.348 0.652 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.258 0.742 40 H 0.057 0.943 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 7.757 -11.983 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.119 0.881 4 C 0.119 3.881 5 N -0.253 5.253 6 C 0.013 3.987 7 C -0.326 4.326 8 C 0.151 3.849 9 N -0.430 5.430 10 N -0.236 5.236 11 H 0.256 0.744 12 N -0.226 5.226 13 C -0.074 4.074 14 C -0.152 4.152 15 C -0.140 4.140 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.548 4.548 19 H 0.071 0.929 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.200 1.200 26 C -0.087 4.087 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.117 8.342 -11.052 13.892 hybrid contribution 0.474 -1.812 -1.744 2.560 sum 1.591 6.530 -12.797 14.455 Atomic orbital electron populations 1.21963 0.91657 1.04159 1.02683 1.21293 0.97055 0.97510 0.82837 0.88102 1.25502 0.86510 0.89161 0.86977 1.68535 1.21974 1.04860 1.29971 1.22504 0.88430 1.00077 0.87703 1.22596 1.14425 0.94524 1.01083 1.18800 0.89927 0.88361 0.87804 1.69535 1.31975 1.41189 1.00282 1.43130 1.57790 1.14776 1.07873 0.74447 1.62538 1.06699 1.23797 1.29565 1.22164 0.87422 0.98762 0.99016 1.21618 0.97964 0.99674 0.95936 1.21559 0.98852 0.92550 1.01081 1.18653 0.91268 0.94947 0.91502 0.94717 1.21113 1.32969 1.01346 0.99386 0.92879 1.24914 0.95467 0.97761 0.95521 1.69980 1.45704 1.35672 1.01245 0.86730 0.78696 0.86240 0.77205 1.20893 1.21459 1.19994 1.22914 0.97379 0.86490 1.01896 0.90628 0.89741 0.92542 0.82350 0.84277 0.83607 0.93830 0.93201 0.93713 0.92155 0.94734 0.91273 0.93225 0.92441 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.68 37.16 0.32 -1.34 16 2 C 0.13 1.58 2.89 -68.86 -0.20 1.38 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.39 5.02 5.96 -154.93 -0.92 4.10 16 5 N -0.53 -7.92 4.97 -10.55 -0.05 -7.97 16 6 C 0.15 1.99 11.16 -17.63 -0.20 1.80 16 7 C -0.30 -3.64 9.97 -39.07 -0.39 -4.03 16 8 C 0.42 5.55 7.87 -155.64 -1.22 4.32 16 9 N -0.80 -10.73 14.19 31.38 0.45 -10.28 16 10 N -0.61 -7.13 5.42 -9.30 -0.05 -7.18 16 11 H 0.42 3.95 8.82 -40.82 -0.36 3.59 16 12 N -0.50 -8.32 4.71 -228.08 -1.07 -9.39 16 13 C 0.05 0.90 4.94 -3.84 -0.02 0.88 16 14 C -0.11 -2.14 6.09 -26.65 -0.16 -2.30 16 15 C -0.10 -2.33 5.09 -26.61 -0.14 -2.47 16 16 C 0.06 1.33 2.13 -91.69 -0.20 1.14 16 17 H 0.03 0.95 8.09 -51.93 -0.42 0.53 16 18 C -0.51 -13.65 8.48 -34.44 -0.29 -13.95 16 19 H 0.05 1.42 7.77 -52.49 -0.41 1.01 16 20 C 0.06 1.77 5.22 -17.82 -0.09 1.68 16 21 N -0.89 -25.28 12.18 55.43 0.68 -24.60 16 22 Si 0.88 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.04 0.78 3.87 -3.83 -0.01 0.76 16 27 H 0.07 1.01 6.19 -51.93 -0.32 0.69 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.35 4.18 8.77 -40.82 -0.36 3.82 16 33 H 0.04 0.75 5.99 -51.93 -0.31 0.44 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.78 6.98 -51.93 -0.36 1.41 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.06 1.14 5.84 -51.93 -0.30 0.83 16 41 H 0.08 1.63 5.19 -51.93 -0.27 1.36 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -29.96 319.73 -9.84 -39.80 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.05 Total: 6.79 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.52 Total: -8.04 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.06 Total: -59.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.96 -9.84 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.092 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds