Wall clock time and date at job start Mon Mar 30 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.50697 * 109.47342 * 239.99521 * 2 1 3 5 5 N 1.30400 * 119.29436 * 265.02227 * 4 2 1 6 6 C 1.33787 * 122.03307 * 180.02562 * 5 4 2 7 7 C 1.35647 * 120.40489 * 359.71039 * 6 5 4 8 8 C 1.41988 * 118.60338 * 0.53698 * 7 6 5 9 9 N 1.31475 * 120.91641 * 179.74878 * 8 7 6 10 10 N 1.35664 * 119.28695 * 85.00462 * 4 2 1 11 11 H 0.96993 * 120.31343 * 359.97438 * 10 4 2 12 12 N 1.46907 * 109.46968 * 119.99751 * 2 1 3 13 13 C 1.46845 * 111.00121 * 176.04547 * 12 2 1 14 14 C 1.53035 * 109.52223 * 174.16231 * 13 12 2 15 15 C 1.53115 * 109.28102 * 59.18378 * 14 13 12 16 16 C 1.53127 * 109.15655 * 302.34342 * 15 14 13 17 17 H 1.09004 * 109.50236 * 297.67663 * 16 15 14 18 18 C 1.50699 * 109.50290 * 177.59515 * 16 15 14 19 19 H 1.07998 * 120.00206 * 245.43518 * 18 16 15 20 20 C 1.37882 * 119.99993 * 65.43167 * 18 16 15 21 21 N 1.31517 * 119.99729 * 9.57030 * 20 18 16 22 22 Si 1.86796 * 120.00006 * 189.56473 * 20 18 16 23 23 H 1.48504 * 109.46761 * 94.99652 * 22 20 18 24 24 H 1.48503 * 109.47051 * 214.99060 * 22 20 18 25 25 H 1.48495 * 109.47234 * 334.99544 * 22 20 18 26 26 C 1.46847 * 110.99540 * 51.83709 * 12 2 1 27 27 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47419 * 300.00340 * 1 2 3 29 29 H 1.09003 * 109.46980 * 60.00084 * 1 2 3 30 30 H 1.07989 * 119.79588 * 180.02562 * 6 5 4 31 31 H 1.08010 * 120.69897 * 180.29125 * 7 6 5 32 32 H 0.96997 * 119.99944 * 359.71389 * 9 8 7 33 33 H 1.09005 * 109.46320 * 294.18023 * 13 12 2 34 34 H 1.09005 * 109.45852 * 54.14673 * 13 12 2 35 35 H 1.09006 * 109.49817 * 179.12320 * 14 13 12 36 36 H 1.08995 * 109.50395 * 299.23778 * 14 13 12 37 37 H 1.08998 * 109.52239 * 62.24591 * 15 14 13 38 38 H 1.08993 * 109.52295 * 182.44285 * 15 14 13 39 39 H 0.96997 * 120.00082 * 179.97438 * 21 20 18 40 40 H 1.08994 * 109.46647 * 305.85354 * 26 12 2 41 41 H 1.09000 * 109.46714 * 65.82747 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.3381 -1.9760 -1.1562 6 6 2.7893 -2.6601 -2.2137 7 6 2.9385 -2.0476 -3.4148 8 6 2.6174 -0.6685 -3.5192 9 7 2.7498 -0.0286 -4.6600 10 7 2.1564 -0.0198 -2.3914 11 1 1.9238 0.9211 -2.4285 12 7 2.0196 -0.6925 1.1995 13 6 3.4845 -0.7945 1.1872 14 6 3.9669 -1.3878 2.5128 15 6 3.3419 -2.7725 2.7042 16 6 1.8165 -2.6450 2.6648 17 1 1.4826 -2.0139 3.4885 18 6 1.1939 -4.0113 2.7934 19 1 0.6315 -4.4281 1.9710 20 6 1.3425 -4.7295 3.9610 21 7 1.8607 -4.1553 5.0247 22 14 0.8075 -6.5178 4.0321 23 1 1.9749 -7.3948 3.7612 24 1 0.2648 -6.8188 5.3813 25 1 -0.2424 -6.7614 3.0106 26 6 1.3963 -2.0152 1.3347 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.0313 -3.7076 -2.1117 31 1 3.2980 -2.5965 -4.2728 32 1 3.0746 -0.4977 -5.4444 33 1 3.7967 -1.4393 0.3656 34 1 3.9165 0.1974 1.0546 35 1 5.0532 -1.4779 2.4971 36 1 3.6670 -0.7365 3.3336 37 1 3.6729 -3.4352 1.9047 38 1 3.6485 -3.1805 3.6673 39 1 1.9649 -4.6603 5.8462 40 1 0.3117 -1.9100 1.3094 41 1 1.7183 -2.6543 0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:27 Heat of formation + Delta-G solvation = 55.172909 kcal Electronic energy + Delta-G solvation = -22331.818767 eV Core-core repulsion = 19246.604315 eV Total energy + Delta-G solvation = -3085.214452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28083 -39.76200 -36.58019 -35.90531 -34.75308 -33.73317 -31.63304 -30.50983 -30.38241 -26.99083 -26.07287 -24.85650 -24.24053 -22.91368 -21.68164 -20.44391 -19.23557 -18.49247 -18.40103 -17.64490 -16.76673 -16.40722 -16.12241 -15.85783 -15.68944 -15.44911 -14.75516 -14.26793 -14.24900 -13.99194 -13.91262 -13.64418 -13.05654 -12.80586 -12.77778 -12.68334 -12.47582 -12.35201 -12.03697 -11.80475 -11.58950 -11.44588 -11.30770 -10.89944 -10.66954 -10.51991 -10.42116 -10.29172 -8.93275 -8.74051 -8.04554 -6.10937 -0.24231 0.91091 1.42861 1.44700 1.54092 1.62444 2.47935 2.62770 2.81616 3.26154 3.35203 3.61492 3.87025 4.03278 4.21413 4.25836 4.30965 4.38746 4.42810 4.56353 4.77311 4.87000 4.90952 4.93900 4.96018 5.08190 5.12705 5.19118 5.24097 5.39630 5.44465 5.47880 5.56745 5.62407 5.74886 6.05638 6.15201 6.19968 6.30380 6.37003 6.61613 6.98710 7.03667 7.24540 7.54864 9.04252 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.005174 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.512477 B = 5410.823048 C = 5783.134221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.127 3.873 3 H 0.138 0.862 4 C 0.389 3.611 5 N -0.563 5.563 6 C 0.137 3.863 7 C -0.292 4.292 8 C 0.416 3.584 9 N -0.807 5.807 10 N -0.601 5.601 11 H 0.429 0.571 12 N -0.512 5.512 13 C 0.061 3.939 14 C -0.108 4.108 15 C -0.093 4.093 16 C 0.053 3.947 17 H -0.006 1.006 18 C -0.524 4.524 19 H 0.049 0.951 20 C 0.016 3.984 21 N -0.918 5.918 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.268 1.268 26 C 0.058 3.942 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.353 0.647 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.258 0.742 40 H 0.052 0.948 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 8.772 -13.866 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.155 0.845 4 C 0.122 3.878 5 N -0.287 5.287 6 C -0.001 4.001 7 C -0.320 4.320 8 C 0.143 3.857 9 N -0.443 5.443 10 N -0.225 5.225 11 H 0.269 0.731 12 N -0.234 5.234 13 C -0.067 4.067 14 C -0.146 4.146 15 C -0.131 4.131 16 C 0.034 3.966 17 H 0.012 0.988 18 C -0.563 4.563 19 H 0.067 0.933 20 C -0.182 4.182 21 N -0.558 5.558 22 Si 0.770 3.230 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.069 4.069 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.202 9.377 -12.961 16.042 hybrid contribution 0.436 -2.094 -1.199 2.452 sum 1.638 7.283 -14.159 16.007 Atomic orbital electron populations 1.21945 0.90817 1.03038 1.04300 1.21460 0.97699 0.98374 0.80963 0.84471 1.25294 0.86351 0.88805 0.87383 1.68394 1.23007 1.05984 1.31266 1.22682 0.88971 1.00663 0.87745 1.22800 1.13444 0.94355 1.01375 1.18994 0.89958 0.88807 0.87981 1.69535 1.32388 1.41665 1.00668 1.42975 1.57212 1.15237 1.07120 0.73060 1.62390 1.06660 1.21818 1.32575 1.22102 0.87462 1.00163 0.96983 1.21528 0.98896 0.96849 0.97325 1.21348 0.98281 0.94919 0.98594 1.18581 0.91944 0.93432 0.92594 0.98783 1.21496 1.32815 1.02794 0.99200 0.93254 1.25643 0.95761 1.01541 0.95284 1.70108 1.46966 1.37056 1.01677 0.85768 0.78465 0.81533 0.77234 1.20471 1.21263 1.19216 1.22514 0.97217 0.88239 0.98958 0.93076 0.89524 0.89546 0.81428 0.82344 0.82967 0.94204 0.89992 0.91826 0.93089 0.95467 0.95033 0.93345 0.92923 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.68 71.98 0.62 -2.30 16 2 C 0.13 2.83 2.89 44.16 0.13 2.95 16 3 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.39 9.16 5.96 137.96 0.82 9.98 16 5 N -0.56 -15.94 4.97 -187.28 -0.93 -16.87 16 6 C 0.14 3.40 11.16 83.79 0.94 4.34 16 7 C -0.29 -6.47 9.97 22.60 0.23 -6.25 16 8 C 0.42 9.80 7.87 134.38 1.06 10.85 16 9 N -0.81 -19.75 14.19 -54.62 -0.78 -20.52 16 10 N -0.60 -12.20 5.42 -183.32 -0.99 -13.19 16 11 H 0.43 6.58 8.82 -92.71 -0.82 5.76 16 12 N -0.51 -16.18 4.71 -875.51 -4.12 -20.31 16 13 C 0.06 1.88 4.94 86.33 0.43 2.31 16 14 C -0.11 -4.01 6.09 30.64 0.19 -3.83 16 15 C -0.09 -4.37 5.09 30.68 0.16 -4.22 16 16 C 0.05 2.66 2.13 -11.48 -0.02 2.64 16 17 H -0.01 -0.35 8.09 -2.38 -0.02 -0.37 16 18 C -0.52 -28.91 8.48 25.60 0.22 -28.69 16 19 H 0.05 2.69 7.77 -2.91 -0.02 2.67 16 20 C 0.02 0.90 5.22 84.66 0.44 1.35 16 21 N -0.92 -54.11 12.18 21.45 0.26 -53.85 16 22 Si 0.94 43.99 29.55 68.60 2.03 46.01 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.06 2.29 3.87 86.33 0.33 2.63 16 27 H 0.05 1.31 6.19 -2.39 -0.01 1.29 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.17 3.65 8.06 -2.92 -0.02 3.62 16 31 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.35 7.70 8.77 -92.71 -0.81 6.89 16 33 H 0.04 1.30 5.99 -2.38 -0.01 1.28 16 34 H 0.08 2.07 8.12 -2.38 -0.02 2.05 16 35 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 1.68 6.98 -2.39 -0.02 1.66 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.05 2.11 5.84 -2.39 -0.01 2.10 16 41 H 0.08 3.19 5.19 -2.39 -0.01 3.17 16 Total: -1.00 -66.31 319.73 0.42 -65.90 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.58 Total: 21.07 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.53 Total: -8.24 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -6.56 Total: -124.75 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.31 0.42 -65.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.070 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds