Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47217 * 2 1 4 4 C 1.50698 * 109.47200 * 239.99757 * 2 1 3 5 5 N 1.30404 * 119.28817 * 265.69748 * 4 2 1 6 6 C 1.33784 * 122.02933 * 179.75828 * 5 4 2 7 7 C 1.35646 * 120.40661 * 0.51266 * 6 5 4 8 8 C 1.41982 * 118.60357 * 359.75946 * 7 6 5 9 9 N 1.31482 * 120.91573 * 180.02562 * 8 7 6 10 10 N 1.35659 * 119.29226 * 85.96930 * 4 2 1 11 11 H 0.96998 * 120.30837 * 0.02562 * 10 4 2 12 12 N 1.46906 * 109.47090 * 119.99529 * 2 1 3 13 13 C 1.46840 * 110.99857 * 183.66119 * 12 2 1 14 14 C 1.53036 * 109.52221 * 185.84195 * 13 12 2 15 15 C 1.53121 * 109.31035 * 300.80002 * 14 13 12 16 16 C 1.53203 * 109.11636 * 57.63560 * 15 14 13 17 17 H 1.08999 * 109.52351 * 62.33740 * 16 15 14 18 18 C 1.50705 * 109.49261 * 182.42376 * 16 15 14 19 19 H 1.07997 * 119.99583 * 119.81729 * 18 16 15 20 20 C 1.37874 * 119.99736 * 299.82341 * 18 16 15 21 21 N 1.31509 * 120.00307 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99676 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46894 * 59.99930 * 22 20 18 24 24 H 1.48493 * 109.46847 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46926 * 299.99892 * 22 20 18 26 26 C 1.46845 * 111.00101 * 307.87124 * 12 2 1 27 27 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47012 * 300.00550 * 1 2 3 29 29 H 1.08998 * 109.46707 * 60.00148 * 1 2 3 30 30 H 1.07995 * 119.79566 * 180.24717 * 6 5 4 31 31 H 1.08011 * 120.69688 * 179.73250 * 7 6 5 32 32 H 0.96996 * 120.00176 * 359.97438 * 9 8 7 33 33 H 1.09001 * 109.46685 * 65.82299 * 13 12 2 34 34 H 1.09005 * 109.45325 * 305.84797 * 13 12 2 35 35 H 1.09001 * 109.50739 * 60.75905 * 14 13 12 36 36 H 1.09003 * 109.50571 * 180.83918 * 14 13 12 37 37 H 1.08998 * 109.52471 * 177.58055 * 15 14 13 38 38 H 1.09005 * 109.52036 * 297.77146 * 15 14 13 39 39 H 0.96997 * 119.99922 * 179.97438 * 21 20 18 40 40 H 1.09007 * 109.46380 * 294.17777 * 26 12 2 41 41 H 1.09003 * 109.46514 * 54.14885 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.3255 -1.9791 -1.1595 6 6 2.7710 -2.6647 -2.2185 7 6 2.9430 -2.0466 -3.4136 8 6 2.6357 -0.6641 -3.5143 9 7 2.7851 -0.0199 -4.6508 10 7 2.1752 -0.0152 -2.3865 11 1 1.9565 0.9293 -2.4199 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.6366 1.2780 14 6 3.9668 -1.4879 2.4550 15 6 3.3479 -0.9568 3.7509 16 6 1.8213 -0.9800 3.6241 17 1 1.4823 -2.0074 3.4917 18 6 1.2042 -0.4033 4.8722 19 1 0.5754 0.4724 4.8087 20 6 1.4425 -0.9938 6.0951 21 7 2.2078 -2.0605 6.1724 22 14 0.6781 -0.2786 7.6424 23 1 -0.8015 -0.2968 7.5174 24 1 1.0852 -1.0913 8.8166 25 1 1.1426 1.1203 7.8228 26 6 1.4017 -0.1435 2.4132 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9991 -3.7157 -2.1201 31 1 3.3064 -2.5945 -4.2705 32 1 3.1096 -0.4891 -5.4352 33 1 3.8019 0.3961 1.4230 34 1 3.9130 -1.0214 0.3523 35 1 3.6622 -2.5235 2.3039 36 1 5.0535 -1.4343 2.5220 37 1 3.6546 -1.5867 4.5859 38 1 3.6835 0.0660 3.9224 39 1 2.3758 -2.4756 7.0328 40 1 1.7283 0.8871 2.5529 41 1 0.3167 -0.1699 2.3121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = 67.540782 kcal Electronic energy + Delta-G solvation = -21853.108678 eV Core-core repulsion = 18768.430537 eV Total energy + Delta-G solvation = -3084.678140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14643 -38.47597 -35.40306 -34.81094 -33.37142 -32.26532 -30.10055 -29.55604 -29.03305 -25.58234 -24.63239 -23.69523 -23.00488 -21.27980 -20.52016 -18.75146 -18.39304 -17.51344 -16.92039 -16.18657 -15.48302 -15.22806 -14.96432 -14.65390 -14.38699 -14.00284 -13.29547 -13.18804 -12.80820 -12.67525 -12.54627 -12.17479 -11.89334 -11.48360 -11.44567 -11.19708 -10.92780 -10.71584 -10.67846 -10.51115 -10.08858 -9.90154 -9.83126 -9.45590 -9.43880 -9.06025 -8.69619 -8.29869 -7.78192 -7.73731 -5.96866 -4.03368 0.67684 1.91626 2.48066 3.32184 3.37515 3.39221 3.59700 3.92155 4.19150 4.46063 4.58696 4.78575 5.05397 5.08421 5.12594 5.32780 5.33304 5.53964 5.70332 5.75473 5.80060 5.87286 6.02666 6.07970 6.20067 6.24681 6.35242 6.37401 6.49682 6.73472 6.76258 6.94336 6.98500 7.23148 7.35936 7.59562 7.68866 7.77214 8.00706 8.09107 8.18327 8.18559 8.47249 9.00542 9.60945 11.09021 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037613 B = 0.004095 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.249397 B = 6835.796130 C = 7198.590436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 H 0.059 0.941 4 C 0.419 3.581 5 N -0.514 5.514 6 C 0.150 3.850 7 C -0.299 4.299 8 C 0.426 3.574 9 N -0.795 5.795 10 N -0.614 5.614 11 H 0.418 0.582 12 N -0.507 5.507 13 C 0.066 3.934 14 C -0.113 4.113 15 C -0.111 4.111 16 C 0.057 3.943 17 H 0.037 0.963 18 C -0.517 4.517 19 H 0.053 0.947 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.889 3.111 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.063 3.937 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.348 0.652 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 1.827 -14.781 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.077 0.923 4 C 0.153 3.847 5 N -0.235 5.235 6 C 0.011 3.989 7 C -0.327 4.327 8 C 0.153 3.847 9 N -0.429 5.429 10 N -0.238 5.238 11 H 0.256 0.744 12 N -0.232 5.232 13 C -0.062 4.062 14 C -0.151 4.151 15 C -0.149 4.149 16 C 0.039 3.961 17 H 0.056 0.944 18 C -0.555 4.555 19 H 0.071 0.929 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.063 4.063 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.392 1.550 -14.362 14.451 hybrid contribution 0.339 0.948 -0.255 1.039 sum 0.731 2.498 -14.617 14.847 Atomic orbital electron populations 1.21966 0.91581 1.04247 1.02686 1.20577 0.96768 0.93883 0.87111 0.92305 1.23413 0.86624 0.88699 0.85991 1.68339 1.20637 1.04767 1.29744 1.22515 0.88744 1.00073 0.87591 1.22642 1.14332 0.94363 1.01375 1.18737 0.90024 0.88296 0.87660 1.69524 1.31777 1.41198 1.00445 1.42954 1.58266 1.14410 1.08203 0.74423 1.61885 1.06544 1.54321 1.00442 1.22051 0.87190 0.97677 0.99287 1.21620 0.97902 0.99933 0.95616 1.21684 0.98256 0.99186 0.95785 1.18659 0.92005 0.95876 0.89601 0.94448 1.21092 1.29925 1.12812 0.91705 0.92901 1.24917 0.95146 0.94854 0.98804 1.69879 1.37358 1.20376 1.24917 0.86709 0.79716 0.79010 0.82821 1.20311 1.21365 1.20429 1.22504 0.98315 0.96518 0.88955 0.90434 0.89854 0.92474 0.82389 0.84217 0.83515 0.96309 0.92389 0.91671 0.93744 0.89128 0.95274 0.92995 0.96172 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.69 37.16 0.32 -1.39 16 2 C 0.13 1.68 2.45 -68.86 -0.17 1.52 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.42 5.42 5.84 -154.93 -0.90 4.52 16 5 N -0.51 -7.32 8.71 -10.55 -0.09 -7.41 16 6 C 0.15 1.78 11.16 -17.63 -0.20 1.59 16 7 C -0.30 -3.37 9.97 -39.08 -0.39 -3.76 16 8 C 0.43 5.36 7.87 -155.64 -1.22 4.14 16 9 N -0.79 -10.39 14.20 31.38 0.45 -9.95 16 10 N -0.61 -7.11 5.42 -9.30 -0.05 -7.16 16 11 H 0.42 4.04 8.82 -40.82 -0.36 3.68 16 12 N -0.51 -8.55 4.14 -228.08 -0.94 -9.50 16 13 C 0.07 1.12 5.16 -3.84 -0.02 1.10 16 14 C -0.11 -2.17 6.09 -26.65 -0.16 -2.33 16 15 C -0.11 -2.54 5.03 -26.56 -0.13 -2.67 16 16 C 0.06 1.37 2.26 -91.65 -0.21 1.16 16 17 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.52 -13.59 8.56 -34.44 -0.29 -13.88 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.75 11.36 55.43 0.63 -24.12 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.06 1.22 4.26 -3.84 -0.02 1.20 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.99 6.19 -51.93 -0.32 0.67 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.35 4.00 8.77 -40.82 -0.36 3.64 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.07 1.28 5.84 -51.93 -0.30 0.98 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -29.26 324.99 -9.81 -39.08 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.19 Total: 5.62 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.49 Total: -7.17 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.01 Total: -58.14 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.26 -9.81 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.618 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds