Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47217 * 2 1 4 4 C 1.50698 * 109.47200 * 239.99757 * 2 1 3 5 5 N 1.30404 * 119.28817 * 265.69748 * 4 2 1 6 6 C 1.33784 * 122.02933 * 179.75828 * 5 4 2 7 7 C 1.35646 * 120.40661 * 0.51266 * 6 5 4 8 8 C 1.41982 * 118.60357 * 359.75946 * 7 6 5 9 9 N 1.31482 * 120.91573 * 180.02562 * 8 7 6 10 10 N 1.35659 * 119.29226 * 85.96930 * 4 2 1 11 11 H 0.96998 * 120.30837 * 0.02562 * 10 4 2 12 12 N 1.46906 * 109.47090 * 119.99529 * 2 1 3 13 13 C 1.46840 * 110.99857 * 183.66119 * 12 2 1 14 14 C 1.53036 * 109.52221 * 185.84195 * 13 12 2 15 15 C 1.53121 * 109.31035 * 300.80002 * 14 13 12 16 16 C 1.53203 * 109.11636 * 57.63560 * 15 14 13 17 17 H 1.08999 * 109.52351 * 62.33740 * 16 15 14 18 18 C 1.50705 * 109.49261 * 182.42376 * 16 15 14 19 19 H 1.07997 * 119.99583 * 119.81729 * 18 16 15 20 20 C 1.37874 * 119.99736 * 299.82341 * 18 16 15 21 21 N 1.31509 * 120.00307 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99676 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46894 * 59.99930 * 22 20 18 24 24 H 1.48493 * 109.46847 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46926 * 299.99892 * 22 20 18 26 26 C 1.46845 * 111.00101 * 307.87124 * 12 2 1 27 27 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47012 * 300.00550 * 1 2 3 29 29 H 1.08998 * 109.46707 * 60.00148 * 1 2 3 30 30 H 1.07995 * 119.79566 * 180.24717 * 6 5 4 31 31 H 1.08011 * 120.69688 * 179.73250 * 7 6 5 32 32 H 0.96996 * 120.00176 * 359.97438 * 9 8 7 33 33 H 1.09001 * 109.46685 * 65.82299 * 13 12 2 34 34 H 1.09005 * 109.45325 * 305.84797 * 13 12 2 35 35 H 1.09001 * 109.50739 * 60.75905 * 14 13 12 36 36 H 1.09003 * 109.50571 * 180.83918 * 14 13 12 37 37 H 1.08998 * 109.52471 * 177.58055 * 15 14 13 38 38 H 1.09005 * 109.52036 * 297.77146 * 15 14 13 39 39 H 0.96997 * 119.99922 * 179.97438 * 21 20 18 40 40 H 1.09007 * 109.46380 * 294.17777 * 26 12 2 41 41 H 1.09003 * 109.46514 * 54.14885 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.3255 -1.9791 -1.1595 6 6 2.7710 -2.6647 -2.2185 7 6 2.9430 -2.0466 -3.4136 8 6 2.6357 -0.6641 -3.5143 9 7 2.7851 -0.0199 -4.6508 10 7 2.1752 -0.0152 -2.3865 11 1 1.9565 0.9293 -2.4199 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.6366 1.2780 14 6 3.9668 -1.4879 2.4550 15 6 3.3479 -0.9568 3.7509 16 6 1.8213 -0.9800 3.6241 17 1 1.4823 -2.0074 3.4917 18 6 1.2042 -0.4033 4.8722 19 1 0.5754 0.4724 4.8087 20 6 1.4425 -0.9938 6.0951 21 7 2.2078 -2.0605 6.1724 22 14 0.6781 -0.2786 7.6424 23 1 -0.8015 -0.2968 7.5174 24 1 1.0852 -1.0913 8.8166 25 1 1.1426 1.1203 7.8228 26 6 1.4017 -0.1435 2.4132 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9991 -3.7157 -2.1201 31 1 3.3064 -2.5945 -4.2705 32 1 3.1096 -0.4891 -5.4352 33 1 3.8019 0.3961 1.4230 34 1 3.9130 -1.0214 0.3523 35 1 3.6622 -2.5235 2.3039 36 1 5.0535 -1.4343 2.5220 37 1 3.6546 -1.5867 4.5859 38 1 3.6835 0.0660 3.9224 39 1 2.3758 -2.4756 7.0328 40 1 1.7283 0.8871 2.5529 41 1 0.3167 -0.1699 2.3121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = 49.058438 kcal Electronic energy + Delta-G solvation = -21853.910132 eV Core-core repulsion = 18768.430537 eV Total energy + Delta-G solvation = -3085.479595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11043 -39.86722 -36.64144 -35.89414 -34.80332 -33.74445 -31.73891 -30.79661 -30.14835 -27.09234 -26.09722 -24.72465 -24.28151 -22.92141 -21.70874 -20.31408 -19.40118 -18.50516 -18.41504 -17.65082 -16.78761 -16.41997 -16.29060 -15.89656 -15.52025 -15.29062 -14.86849 -14.46353 -14.32410 -14.07806 -13.89208 -13.67027 -13.11188 -12.80930 -12.70524 -12.60487 -12.48995 -12.37434 -12.26817 -11.76675 -11.64695 -11.44156 -11.31162 -10.90993 -10.76776 -10.55314 -10.37942 -10.30610 -9.07152 -8.71738 -8.01357 -6.14911 -0.23231 0.95782 1.46564 1.47300 1.53648 1.55241 2.47841 2.67075 2.92668 3.07081 3.26325 3.67047 3.84845 4.05267 4.12928 4.22077 4.29879 4.32989 4.43559 4.50131 4.66398 4.71925 4.80888 4.86279 4.93204 4.95328 5.06939 5.13623 5.20196 5.21637 5.35984 5.46185 5.47744 5.59284 5.70468 6.01000 6.12198 6.19541 6.27965 6.31648 6.52165 6.99029 7.07860 7.27813 7.52990 9.03094 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037613 B = 0.004095 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.249397 B = 6835.796130 C = 7198.590436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.128 3.872 3 H 0.083 0.917 4 C 0.419 3.581 5 N -0.544 5.544 6 C 0.139 3.861 7 C -0.292 4.292 8 C 0.417 3.583 9 N -0.810 5.810 10 N -0.605 5.605 11 H 0.427 0.573 12 N -0.519 5.519 13 C 0.074 3.926 14 C -0.105 4.105 15 C -0.103 4.103 16 C 0.054 3.946 17 H -0.003 1.003 18 C -0.532 4.532 19 H 0.056 0.944 20 C 0.014 3.986 21 N -0.916 5.916 22 Si 0.951 3.049 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.272 1.272 26 C 0.079 3.921 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.355 0.645 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.024 0.976 39 H 0.258 0.742 40 H 0.023 0.977 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 3.064 -16.258 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.100 0.900 4 C 0.152 3.848 5 N -0.266 5.266 6 C 0.000 4.000 7 C -0.320 4.320 8 C 0.144 3.856 9 N -0.446 5.446 10 N -0.230 5.230 11 H 0.266 0.734 12 N -0.244 5.244 13 C -0.053 4.053 14 C -0.143 4.143 15 C -0.142 4.142 16 C 0.035 3.965 17 H 0.015 0.985 18 C -0.571 4.571 19 H 0.075 0.925 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.777 3.223 23 H -0.196 1.196 24 H -0.215 1.215 25 H -0.197 1.197 26 C -0.048 4.048 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.195 0.805 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.142 2.802 -15.864 16.110 hybrid contribution 0.420 0.527 0.147 0.690 sum 0.562 3.329 -15.717 16.075 Atomic orbital electron populations 1.21944 0.90497 1.03595 1.04020 1.20666 0.97619 0.94578 0.85390 0.89952 1.23179 0.86917 0.88537 0.86160 1.68292 1.21418 1.05584 1.31259 1.22815 0.88862 1.00982 0.87314 1.22874 1.13297 0.93915 1.01912 1.18979 0.89999 0.88951 0.87708 1.69514 1.32363 1.41805 1.00903 1.42835 1.57811 1.14782 1.07604 0.73362 1.61705 1.06368 1.55472 1.00887 1.21931 0.87429 0.97517 0.98463 1.21500 0.98775 0.99254 0.94778 1.21482 0.97991 0.98129 0.96550 1.18575 0.92430 0.94263 0.91189 0.98496 1.21522 1.29826 1.12838 0.92918 0.92530 1.25696 0.95683 0.95244 1.01872 1.70040 1.38601 1.21620 1.25329 0.85726 0.79082 0.78388 0.79109 1.19588 1.21481 1.19682 1.22148 0.98839 0.95470 0.88358 0.92063 0.90078 0.89563 0.80475 0.82009 0.82804 0.95484 0.91131 0.93282 0.92012 0.92709 0.95751 0.93273 0.95875 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.69 71.98 0.63 -2.39 16 2 C 0.13 3.08 2.45 44.17 0.11 3.19 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.42 9.91 5.84 137.96 0.81 10.72 16 5 N -0.54 -14.58 8.71 -187.28 -1.63 -16.21 16 6 C 0.14 3.03 11.16 83.80 0.94 3.96 16 7 C -0.29 -5.86 9.97 22.60 0.23 -5.64 16 8 C 0.42 9.49 7.87 134.38 1.06 10.55 16 9 N -0.81 -19.37 14.20 -54.62 -0.78 -20.15 16 10 N -0.61 -12.48 5.42 -183.32 -0.99 -13.47 16 11 H 0.43 7.05 8.82 -92.71 -0.82 6.23 16 12 N -0.52 -16.92 4.14 -875.51 -3.62 -20.55 16 13 C 0.07 2.42 5.16 86.33 0.45 2.87 16 14 C -0.11 -4.04 6.09 30.65 0.19 -3.85 16 15 C -0.10 -4.84 5.03 30.70 0.15 -4.69 16 16 C 0.05 2.65 2.26 -11.46 -0.03 2.62 16 17 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 18 C -0.53 -28.39 8.56 25.60 0.22 -28.17 16 19 H 0.06 2.90 7.74 -2.91 -0.02 2.87 16 20 C 0.01 0.75 5.30 84.65 0.45 1.19 16 21 N -0.92 -52.78 11.36 21.45 0.24 -52.53 16 22 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 C 0.08 2.99 4.26 86.32 0.37 3.35 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.76 6.19 -2.39 -0.01 1.74 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.35 7.40 8.77 -92.71 -0.81 6.59 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 2.16 6.40 -2.38 -0.02 2.14 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 2.95 6.17 -2.39 -0.01 2.94 16 38 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 2.78 5.84 -2.39 -0.01 2.76 16 Total: -1.00 -63.82 324.99 0.21 -63.61 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -0.58 Total: 20.74 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.55 Total: -6.28 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.78 Total: -122.91 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.82 0.21 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.665 kcal (2) G-P(sol) polarization free energy of solvation -63.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds