Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47544 * 2 1 4 4 C 1.50701 * 109.46918 * 120.00269 * 2 1 3 5 5 N 1.30409 * 119.29575 * 94.97794 * 4 2 1 6 6 C 1.33771 * 122.03174 * 180.02562 * 5 4 2 7 7 C 1.35645 * 120.41683 * 359.97438 * 6 5 4 8 8 C 1.41992 * 118.59729 * 359.75198 * 7 6 5 9 9 N 1.31471 * 120.91991 * 180.26832 * 8 7 6 10 10 N 1.35664 * 119.29033 * 274.99791 * 4 2 1 11 11 H 0.97002 * 120.31173 * 359.97438 * 10 4 2 12 12 N 1.46905 * 109.47100 * 239.99632 * 2 1 3 13 13 C 1.46843 * 110.99843 * 184.21202 * 12 2 1 14 14 C 1.53040 * 109.52119 * 174.16410 * 13 12 2 15 15 C 1.53121 * 109.27791 * 59.18106 * 14 13 12 16 16 C 1.53113 * 109.15931 * 302.34482 * 15 14 13 17 17 H 1.09010 * 109.53867 * 297.69413 * 16 15 14 18 18 C 1.50699 * 109.50352 * 177.59843 * 16 15 14 19 19 H 1.08003 * 119.99736 * 245.63228 * 18 16 15 20 20 C 1.37877 * 119.99965 * 65.62720 * 18 16 15 21 21 N 1.31512 * 120.00010 * 9.55777 * 20 18 16 22 22 Si 1.86805 * 119.99634 * 189.55704 * 20 18 16 23 23 H 1.48500 * 109.47229 * 94.99388 * 22 20 18 24 24 H 1.48505 * 109.46867 * 214.98836 * 22 20 18 25 25 H 1.48494 * 109.47321 * 334.98790 * 22 20 18 26 26 C 1.46846 * 110.99635 * 60.00282 * 12 2 1 27 27 H 1.08996 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46651 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46601 * 59.99848 * 1 2 3 30 30 H 1.08000 * 119.79560 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.70722 * 180.02562 * 7 6 5 32 32 H 0.97000 * 120.00032 * 0.25118 * 9 8 7 33 33 H 1.09002 * 109.46736 * 294.17581 * 13 12 2 34 34 H 1.09001 * 109.46631 * 54.15032 * 13 12 2 35 35 H 1.08996 * 109.50266 * 299.23906 * 14 13 12 36 36 H 1.09006 * 109.53656 * 179.14088 * 14 13 12 37 37 H 1.08997 * 109.51996 * 182.44047 * 15 14 13 38 38 H 1.09000 * 109.52362 * 62.25052 * 15 14 13 39 39 H 0.97003 * 119.99876 * 179.97438 * 21 20 18 40 40 H 1.08993 * 109.46687 * 305.85847 * 26 12 2 41 41 H 1.09008 * 109.46094 * 65.82235 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.3380 -1.9761 1.1564 6 6 2.7881 -2.6603 2.2141 7 6 2.9424 -2.0467 3.4140 8 6 2.6217 -0.6674 3.5182 9 7 2.7591 -0.0261 4.6576 10 7 2.1563 -0.0198 2.3915 11 1 1.9244 0.9213 2.4285 12 7 2.0197 -0.6926 -1.1994 13 6 3.4841 -0.8000 -1.1840 14 6 3.9470 -1.6502 -2.3694 15 6 3.4781 -0.9981 -3.6730 16 6 1.9541 -0.8538 -3.6428 17 1 1.4955 -1.8409 -3.5825 18 6 1.4895 -0.1591 -4.8969 19 1 1.0368 0.8196 -4.8360 20 6 1.6426 -0.7729 -6.1220 21 7 2.0169 -2.0321 -6.1844 22 14 1.3181 0.1841 -7.6931 23 1 2.5960 0.7379 -8.2083 24 1 0.7251 -0.7209 -8.7103 25 1 0.3752 1.2958 -7.4098 26 6 1.5488 -0.0267 -2.4206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.0310 -3.7077 2.1119 31 1 3.3058 -2.5945 4.2708 32 1 3.0870 -0.4944 5.4413 33 1 3.9221 0.1954 -1.2582 34 1 3.8042 -1.2691 -0.2537 35 1 3.5205 -2.6500 -2.2886 36 1 5.0350 -1.7174 -2.3669 37 1 3.7682 -1.6229 -4.5177 38 1 3.9353 -0.0137 -3.7729 39 1 2.1243 -2.4640 -7.0463 40 1 0.4633 0.0659 -2.3883 41 1 1.9959 0.9651 -2.4888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = 67.783963 kcal Electronic energy + Delta-G solvation = -21860.576240 eV Core-core repulsion = 18775.908644 eV Total energy + Delta-G solvation = -3084.667595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19877 -38.45873 -35.42312 -34.83721 -33.35511 -32.27531 -30.13363 -29.57291 -29.09158 -25.54744 -24.61597 -23.70711 -23.03650 -21.30697 -20.57199 -18.76704 -18.43043 -17.53301 -16.92409 -16.19123 -15.53444 -15.20724 -14.99245 -14.65670 -14.37336 -13.94169 -13.34613 -13.21734 -12.83382 -12.65205 -12.55691 -12.20195 -11.91644 -11.52453 -11.42134 -11.25147 -10.92579 -10.72287 -10.69554 -10.53025 -10.16241 -9.90359 -9.87484 -9.46197 -9.43980 -9.03022 -8.73417 -8.29761 -7.79446 -7.73969 -6.00249 -4.02049 0.65239 1.88748 2.45957 3.30830 3.38712 3.40604 3.56821 3.88481 4.19124 4.46424 4.56630 4.76217 5.03951 5.10974 5.11797 5.31063 5.32182 5.55306 5.71255 5.76330 5.78008 5.87322 6.01452 6.07107 6.21336 6.24400 6.34342 6.35746 6.48585 6.69397 6.73003 6.92589 6.95922 7.20303 7.29101 7.57940 7.67465 7.75814 7.97185 8.01185 8.12221 8.16427 8.46607 9.02449 9.61024 11.08773 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038044 B = 0.004093 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.819164 B = 6839.619248 C = 7198.105488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.128 3.872 3 H 0.060 0.940 4 C 0.419 3.581 5 N -0.516 5.516 6 C 0.149 3.851 7 C -0.298 4.298 8 C 0.426 3.574 9 N -0.794 5.794 10 N -0.613 5.613 11 H 0.418 0.582 12 N -0.507 5.507 13 C 0.062 3.938 14 C -0.112 4.112 15 C -0.106 4.106 16 C 0.056 3.944 17 H 0.045 0.955 18 C -0.518 4.518 19 H 0.053 0.947 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.885 3.115 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.064 3.936 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.349 0.651 33 H 0.016 0.984 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 1.461 15.194 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.077 0.923 4 C 0.153 3.847 5 N -0.237 5.237 6 C 0.010 3.990 7 C -0.326 4.326 8 C 0.152 3.848 9 N -0.428 5.428 10 N -0.238 5.238 11 H 0.256 0.744 12 N -0.232 5.232 13 C -0.066 4.066 14 C -0.150 4.150 15 C -0.144 4.144 16 C 0.037 3.963 17 H 0.063 0.937 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.713 3.287 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.062 4.062 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.536 1.188 14.757 14.815 hybrid contribution 0.682 1.031 0.232 1.258 sum 1.218 2.218 14.990 15.202 Atomic orbital electron populations 1.21915 0.91524 1.04188 1.02590 1.20622 0.96955 0.93997 0.86762 0.92283 1.23399 0.86632 0.88696 0.85980 1.68359 1.20615 1.04766 1.29988 1.22506 0.88894 1.00002 0.87599 1.22641 1.14244 0.94476 1.01246 1.18738 0.90031 0.88310 0.87682 1.69519 1.31776 1.41190 1.00347 1.42951 1.57990 1.14843 1.07970 0.74368 1.61939 1.10675 1.50761 0.99875 1.22128 0.86845 0.97783 0.99835 1.21593 0.98088 0.99901 0.95403 1.21615 0.99216 0.98358 0.95250 1.18660 0.91743 0.96372 0.89546 0.93723 1.21098 1.40280 1.03135 0.91199 0.92838 1.24914 0.95236 0.94523 0.98869 1.69979 1.47417 1.09923 1.24854 0.86697 0.78285 0.80049 0.83650 1.20831 1.21338 1.19946 1.22481 0.99284 0.95493 0.88916 0.90488 0.92527 0.89958 0.82343 0.84183 0.83480 0.96585 0.91447 0.91522 0.93729 0.90940 0.95026 0.93062 0.91314 0.96264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.95 37.16 0.33 -1.34 16 2 C 0.13 1.68 2.45 -68.86 -0.17 1.51 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.42 5.36 5.84 -154.92 -0.91 4.45 16 5 N -0.52 -7.21 8.01 -10.55 -0.08 -7.29 16 6 C 0.15 1.74 11.16 -17.63 -0.20 1.54 16 7 C -0.30 -3.29 9.97 -39.07 -0.39 -3.68 16 8 C 0.43 5.29 7.87 -155.64 -1.22 4.06 16 9 N -0.79 -10.27 14.19 31.39 0.45 -9.82 16 10 N -0.61 -7.02 5.42 -9.29 -0.05 -7.07 16 11 H 0.42 4.00 8.82 -40.82 -0.36 3.64 16 12 N -0.51 -8.54 4.21 -228.08 -0.96 -9.50 16 13 C 0.06 1.05 5.04 -3.83 -0.02 1.03 16 14 C -0.11 -2.13 6.09 -26.65 -0.16 -2.29 16 15 C -0.11 -2.40 5.09 -26.61 -0.14 -2.53 16 16 C 0.06 1.32 2.13 -91.70 -0.19 1.13 16 17 H 0.04 1.21 8.09 -51.92 -0.42 0.79 16 18 C -0.52 -13.66 8.48 -34.44 -0.29 -13.95 16 19 H 0.05 1.39 7.77 -52.48 -0.41 0.98 16 20 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 21 N -0.88 -24.89 12.19 55.43 0.68 -24.22 16 22 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.06 1.24 4.44 -3.83 -0.02 1.23 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.98 6.28 -51.93 -0.33 0.65 16 30 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.35 3.95 8.77 -40.82 -0.36 3.60 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 1.09 5.67 -51.93 -0.29 0.80 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.84 6.99 -51.93 -0.36 1.48 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 1.28 6.01 -51.93 -0.31 0.97 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -29.47 325.62 -9.76 -39.23 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.20 Total: 5.17 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.47 Total: -7.14 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.03 Total: -57.90 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.47 -9.76 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.012 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds