Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47544 * 2 1 4 4 C 1.50701 * 109.46918 * 120.00269 * 2 1 3 5 5 N 1.30409 * 119.29575 * 94.97794 * 4 2 1 6 6 C 1.33771 * 122.03174 * 180.02562 * 5 4 2 7 7 C 1.35645 * 120.41683 * 359.97438 * 6 5 4 8 8 C 1.41992 * 118.59729 * 359.75198 * 7 6 5 9 9 N 1.31471 * 120.91991 * 180.26832 * 8 7 6 10 10 N 1.35664 * 119.29033 * 274.99791 * 4 2 1 11 11 H 0.97002 * 120.31173 * 359.97438 * 10 4 2 12 12 N 1.46905 * 109.47100 * 239.99632 * 2 1 3 13 13 C 1.46843 * 110.99843 * 184.21202 * 12 2 1 14 14 C 1.53040 * 109.52119 * 174.16410 * 13 12 2 15 15 C 1.53121 * 109.27791 * 59.18106 * 14 13 12 16 16 C 1.53113 * 109.15931 * 302.34482 * 15 14 13 17 17 H 1.09010 * 109.53867 * 297.69413 * 16 15 14 18 18 C 1.50699 * 109.50352 * 177.59843 * 16 15 14 19 19 H 1.08003 * 119.99736 * 245.63228 * 18 16 15 20 20 C 1.37877 * 119.99965 * 65.62720 * 18 16 15 21 21 N 1.31512 * 120.00010 * 9.55777 * 20 18 16 22 22 Si 1.86805 * 119.99634 * 189.55704 * 20 18 16 23 23 H 1.48500 * 109.47229 * 94.99388 * 22 20 18 24 24 H 1.48505 * 109.46867 * 214.98836 * 22 20 18 25 25 H 1.48494 * 109.47321 * 334.98790 * 22 20 18 26 26 C 1.46846 * 110.99635 * 60.00282 * 12 2 1 27 27 H 1.08996 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46651 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46601 * 59.99848 * 1 2 3 30 30 H 1.08000 * 119.79560 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.70722 * 180.02562 * 7 6 5 32 32 H 0.97000 * 120.00032 * 0.25118 * 9 8 7 33 33 H 1.09002 * 109.46736 * 294.17581 * 13 12 2 34 34 H 1.09001 * 109.46631 * 54.15032 * 13 12 2 35 35 H 1.08996 * 109.50266 * 299.23906 * 14 13 12 36 36 H 1.09006 * 109.53656 * 179.14088 * 14 13 12 37 37 H 1.08997 * 109.51996 * 182.44047 * 15 14 13 38 38 H 1.09000 * 109.52362 * 62.25052 * 15 14 13 39 39 H 0.97003 * 119.99876 * 179.97438 * 21 20 18 40 40 H 1.08993 * 109.46687 * 305.85847 * 26 12 2 41 41 H 1.09008 * 109.46094 * 65.82235 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.3380 -1.9761 1.1564 6 6 2.7881 -2.6603 2.2141 7 6 2.9424 -2.0467 3.4140 8 6 2.6217 -0.6674 3.5182 9 7 2.7591 -0.0261 4.6576 10 7 2.1563 -0.0198 2.3915 11 1 1.9244 0.9213 2.4285 12 7 2.0197 -0.6926 -1.1994 13 6 3.4841 -0.8000 -1.1840 14 6 3.9470 -1.6502 -2.3694 15 6 3.4781 -0.9981 -3.6730 16 6 1.9541 -0.8538 -3.6428 17 1 1.4955 -1.8409 -3.5825 18 6 1.4895 -0.1591 -4.8969 19 1 1.0368 0.8196 -4.8360 20 6 1.6426 -0.7729 -6.1220 21 7 2.0169 -2.0321 -6.1844 22 14 1.3181 0.1841 -7.6931 23 1 2.5960 0.7379 -8.2083 24 1 0.7251 -0.7209 -8.7103 25 1 0.3752 1.2958 -7.4098 26 6 1.5488 -0.0267 -2.4206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.0310 -3.7077 2.1119 31 1 3.3058 -2.5945 4.2708 32 1 3.0870 -0.4944 5.4413 33 1 3.9221 0.1954 -1.2582 34 1 3.8042 -1.2691 -0.2537 35 1 3.5205 -2.6500 -2.2886 36 1 5.0350 -1.7174 -2.3669 37 1 3.7682 -1.6229 -4.5177 38 1 3.9353 -0.0137 -3.7729 39 1 2.1243 -2.4640 -7.0463 40 1 0.4633 0.0659 -2.3883 41 1 1.9959 0.9651 -2.4888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 49.148149 kcal Electronic energy + Delta-G solvation = -21861.384349 eV Core-core repulsion = 18775.908644 eV Total energy + Delta-G solvation = -3085.475705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15284 -39.84331 -36.64751 -35.90003 -34.79722 -33.76365 -31.74449 -30.83035 -30.19138 -27.05160 -26.07441 -24.72931 -24.30497 -22.94682 -21.74395 -20.34101 -19.41438 -18.50764 -18.41462 -17.67332 -16.78361 -16.43546 -16.27532 -15.90802 -15.51550 -15.23468 -14.89642 -14.50696 -14.28464 -14.08611 -13.90417 -13.71305 -13.13145 -12.89479 -12.69246 -12.64452 -12.46870 -12.36409 -12.30715 -11.79510 -11.65511 -11.45932 -11.29116 -10.94448 -10.70910 -10.56626 -10.38474 -10.34298 -9.07230 -8.71462 -8.06491 -6.14523 -0.24267 0.94287 1.44212 1.46038 1.53103 1.55636 2.47207 2.65661 2.90070 3.07227 3.24531 3.65745 3.83991 4.07456 4.12858 4.22926 4.29975 4.32830 4.43027 4.49415 4.66023 4.72201 4.81318 4.86595 4.92272 4.94424 5.04785 5.13016 5.19689 5.22409 5.36874 5.45325 5.47454 5.52211 5.70627 5.99216 6.11178 6.11959 6.22902 6.31507 6.52296 6.99921 7.05409 7.27166 7.52118 9.02255 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038044 B = 0.004093 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.819164 B = 6839.619248 C = 7198.105488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.082 0.918 4 C 0.418 3.582 5 N -0.545 5.545 6 C 0.138 3.862 7 C -0.291 4.291 8 C 0.416 3.584 9 N -0.809 5.809 10 N -0.605 5.605 11 H 0.427 0.573 12 N -0.520 5.520 13 C 0.070 3.930 14 C -0.104 4.104 15 C -0.098 4.098 16 C 0.053 3.947 17 H 0.002 0.998 18 C -0.532 4.532 19 H 0.056 0.944 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.947 3.053 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.265 1.265 26 C 0.079 3.921 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.355 0.645 33 H 0.023 0.977 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.074 0.926 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 2.742 16.723 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 H 0.100 0.900 4 C 0.152 3.848 5 N -0.267 5.267 6 C 0.000 4.000 7 C -0.319 4.319 8 C 0.143 3.857 9 N -0.445 5.445 10 N -0.230 5.230 11 H 0.267 0.733 12 N -0.245 5.245 13 C -0.058 4.058 14 C -0.142 4.142 15 C -0.137 4.137 16 C 0.034 3.966 17 H 0.020 0.980 18 C -0.571 4.571 19 H 0.074 0.926 20 C -0.183 4.183 21 N -0.556 5.556 22 Si 0.773 3.227 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.047 4.047 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.196 0.804 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.571 2.487 16.310 16.508 hybrid contribution 0.662 0.595 -0.181 0.908 sum 1.233 3.082 16.129 16.467 Atomic orbital electron populations 1.21895 0.90488 1.03525 1.03878 1.20698 0.97746 0.94676 0.85132 0.90014 1.23145 0.86974 0.88564 0.86119 1.68307 1.21342 1.05511 1.31499 1.22814 0.88964 1.00919 0.87294 1.22876 1.13203 0.93994 1.01811 1.18983 0.89998 0.88977 0.87713 1.69508 1.32390 1.41814 1.00815 1.42832 1.57549 1.15201 1.07378 0.73337 1.61762 1.10663 1.51667 1.00405 1.22025 0.87024 0.97673 0.99040 1.21483 0.99163 0.99057 0.94515 1.21430 0.98528 0.97766 0.95930 1.18565 0.92168 0.94703 0.91149 0.97968 1.21519 1.39825 1.03258 0.92473 0.92564 1.25680 0.95317 0.95259 1.02022 1.70116 1.48736 1.11405 1.25361 0.85712 0.78261 0.78860 0.79830 1.20514 1.21402 1.18880 1.22122 0.99646 0.94612 0.88363 0.92116 0.89599 0.90284 0.80357 0.81970 0.82769 0.95838 0.90152 0.93193 0.91844 0.94605 0.95088 0.93250 0.90773 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.95 71.98 0.64 -2.32 16 2 C 0.13 3.07 2.45 44.17 0.11 3.18 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.42 9.76 5.84 137.96 0.81 10.57 16 5 N -0.54 -14.25 8.01 -187.28 -1.50 -15.75 16 6 C 0.14 2.93 11.16 83.80 0.94 3.87 16 7 C -0.29 -5.70 9.97 22.60 0.23 -5.47 16 8 C 0.42 9.33 7.87 134.38 1.06 10.39 16 9 N -0.81 -19.13 14.19 -54.62 -0.78 -19.91 16 10 N -0.60 -12.29 5.42 -183.31 -0.99 -13.28 16 11 H 0.43 6.97 8.82 -92.71 -0.82 6.15 16 12 N -0.52 -16.91 4.21 -875.50 -3.69 -20.60 16 13 C 0.07 2.27 5.04 86.33 0.44 2.71 16 14 C -0.10 -3.95 6.09 30.65 0.19 -3.76 16 15 C -0.10 -4.54 5.09 30.67 0.16 -4.38 16 16 C 0.05 2.59 2.13 -11.49 -0.02 2.56 16 17 H 0.00 0.12 8.09 -2.38 -0.02 0.10 16 18 C -0.53 -28.43 8.48 25.60 0.22 -28.21 16 19 H 0.06 2.90 7.77 -2.91 -0.02 2.88 16 20 C 0.02 0.89 5.22 84.65 0.44 1.33 16 21 N -0.92 -53.33 12.19 21.45 0.26 -53.07 16 22 Si 0.95 42.95 29.55 68.60 2.03 44.98 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 26 C 0.08 3.02 4.44 86.33 0.38 3.41 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 1.73 6.28 -2.39 -0.01 1.72 16 30 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.36 7.31 8.77 -92.71 -0.81 6.49 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.08 2.44 5.67 -2.39 -0.01 2.43 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.04 1.88 6.99 -2.39 -0.02 1.87 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.07 2.71 6.01 -2.39 -0.01 2.70 16 41 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -64.31 325.62 0.32 -63.99 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.58 Total: 19.78 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.57 Total: -6.14 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -6.70 Total: -122.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.31 0.32 -63.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.140 kcal (2) G-P(sol) polarization free energy of solvation -64.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds