Wall clock time and date at job start Mon Mar 30 2020 02:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46955 * 2 1 4 4 N 1.46497 * 109.47178 * 180.02562 * 3 2 1 5 5 N 1.40081 * 126.03799 * 269.68996 * 4 3 2 6 6 C 1.30842 * 108.20891 * 179.85408 * 5 4 3 7 7 C 1.39872 * 108.19901 * 0.40366 * 6 5 4 8 8 C 1.34953 * 126.03898 * 90.00092 * 4 3 2 9 9 C 1.50692 * 126.12405 * 359.95504 * 8 4 3 10 10 N 1.46900 * 109.47367 * 275.00028 * 9 8 4 11 11 C 1.46897 * 111.00115 * 170.00235 * 10 9 8 12 12 C 1.50699 * 109.47359 * 284.32777 * 11 10 9 13 13 H 1.08004 * 119.99690 * 4.94240 * 12 11 10 14 14 C 1.37877 * 120.00350 * 184.95066 * 12 11 10 15 15 N 1.31512 * 119.99924 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99931 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46949 * 90.00123 * 16 14 12 18 18 H 1.48494 * 109.47027 * 209.99862 * 16 14 12 19 19 H 1.48499 * 109.47081 * 330.00314 * 16 14 12 20 20 C 1.46906 * 110.99965 * 293.95537 * 10 9 8 21 21 C 1.52998 * 109.46834 * 164.04237 * 20 10 9 22 22 C 1.47204 * 109.46875 * 179.49345 * 21 20 10 23 23 N 7.01389 * 137.11641 * 220.78767 * 2 1 3 24 24 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47154 * 299.99635 * 1 2 3 26 26 H 1.09002 * 109.47548 * 60.00415 * 1 2 3 27 27 H 1.08995 * 109.47763 * 120.00214 * 2 1 3 28 28 H 1.09005 * 109.47279 * 240.00101 * 2 1 3 29 29 H 1.09004 * 109.47084 * 299.99826 * 3 2 1 30 30 H 1.08996 * 109.46892 * 60.00204 * 3 2 1 31 31 H 1.08001 * 125.89965 * 180.14889 * 6 5 4 32 32 H 1.08004 * 126.03725 * 179.74107 * 7 6 5 33 33 H 1.09004 * 109.47696 * 35.00244 * 9 8 4 34 34 H 1.09002 * 109.47395 * 155.00171 * 9 8 4 35 35 H 1.08995 * 109.47352 * 44.32648 * 11 10 9 36 36 H 1.09001 * 109.47321 * 164.32581 * 11 10 9 37 37 H 0.97006 * 119.99843 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.47375 * 284.04295 * 20 10 9 39 39 H 1.08998 * 109.46978 * 44.04578 * 20 10 9 40 40 H 1.09002 * 109.47348 * 299.49386 * 21 20 10 41 41 H 1.08996 * 109.47528 * 59.49405 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3295 1.4486 1.1318 6 6 5.5749 1.4434 0.7306 7 6 5.5833 1.4432 -0.6680 8 6 4.2984 1.4428 -1.0922 9 6 3.8362 1.4421 -2.5265 10 7 3.5720 0.0621 -2.9552 11 6 2.8981 0.0361 -4.2602 12 6 1.4505 0.4167 -4.0857 13 1 1.0877 0.7313 -3.1183 14 6 0.5891 0.3632 -5.1609 15 7 -0.6744 0.6949 -5.0085 16 14 1.2166 -0.1805 -6.8343 17 1 1.0721 -1.6528 -6.9626 18 1 0.4284 0.4889 -7.9000 19 1 2.6482 0.1901 -6.9704 20 6 4.8116 -0.7257 -2.9870 21 6 4.4676 -2.2155 -3.0424 22 6 5.7096 -3.0045 -3.0865 23 7 6.6693 -3.6138 -3.1180 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 6.4459 1.4436 1.3692 32 1 6.4605 1.4435 -1.2982 33 1 2.9231 2.0309 -2.6144 34 1 4.6109 1.8767 -3.1582 35 1 3.3814 0.7444 -4.9329 36 1 2.9617 -0.9670 -4.6821 37 1 -1.2805 0.6569 -5.7649 38 1 5.3923 -0.4539 -3.8684 39 1 5.3955 -0.5208 -2.0897 40 1 3.8946 -2.4893 -2.1565 41 1 3.8761 -2.4190 -3.9349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597076045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:27 Heat of formation + Delta-G solvation = 99.769309 kcal Electronic energy + Delta-G solvation = -21904.012040 eV Core-core repulsion = 18820.731434 eV Total energy + Delta-G solvation = -3083.280607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99379 -37.64781 -36.18921 -34.94898 -32.74915 -31.89658 -30.86281 -30.20578 -27.62417 -25.91550 -25.23373 -22.99726 -21.64274 -20.74633 -20.50052 -19.09556 -17.42712 -17.02290 -16.42725 -15.44603 -14.96411 -14.78047 -14.42280 -14.34005 -14.11858 -13.73010 -13.47559 -13.36391 -12.99906 -12.63774 -12.51726 -12.42838 -12.26558 -11.92143 -11.76923 -11.55738 -11.35763 -11.12973 -11.01649 -10.93136 -10.66281 -10.40879 -10.31805 -10.23528 -10.03753 -9.49841 -8.94952 -8.68777 -8.22325 -7.69488 -6.18341 -4.16417 2.16922 2.85111 2.85776 2.91395 3.08573 3.18591 3.27055 3.29423 4.04951 4.30081 4.73816 4.87089 5.02087 5.14610 5.22710 5.25909 5.30929 5.34753 5.49536 5.59725 5.69931 5.79032 5.82189 5.92305 6.00402 6.02235 6.07909 6.12168 6.18033 6.35512 6.40822 6.61053 6.66181 6.69981 6.74870 6.94778 7.34460 7.40403 7.60800 7.70048 7.71944 8.05130 8.47475 8.89236 9.43285 10.94039 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.007383 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.175900 B = 3791.546932 C = 5164.264269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.135 3.865 4 N -0.349 5.349 5 N -0.307 5.307 6 C 0.038 3.962 7 C -0.288 4.288 8 C 0.112 3.888 9 C 0.119 3.881 10 N -0.517 5.517 11 C 0.158 3.842 12 C -0.510 4.510 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.868 3.132 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.051 3.949 21 C -0.026 4.026 22 C 0.218 3.782 23 N -0.455 5.455 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.053 0.947 35 H -0.006 1.006 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.036 0.964 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 1.000 6.712 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.014 3.986 4 N -0.131 5.131 5 N -0.129 5.129 6 C -0.147 4.147 7 C -0.318 4.318 8 C -0.018 4.018 9 C -0.010 4.010 10 N -0.242 5.242 11 C 0.032 3.968 12 C -0.549 4.549 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.079 4.079 21 C -0.067 4.067 22 C -0.100 4.100 23 N -0.133 5.133 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.012 0.988 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.430 -0.092 7.917 10.200 hybrid contribution 0.929 0.256 -2.260 2.457 sum 7.359 0.165 5.658 9.284 Atomic orbital electron populations 1.21645 0.94581 1.02172 1.01952 1.21882 0.96522 0.95298 1.03746 1.21815 0.73537 0.99399 1.03829 1.48674 1.06510 1.54963 1.02913 1.77289 1.01671 1.25111 1.08797 1.23659 0.95169 1.00876 0.94957 1.21171 0.96160 1.19498 0.94960 1.21160 0.90726 0.99121 0.90815 1.20608 1.01561 0.91736 0.87074 1.61872 1.20338 1.09750 1.32197 1.20320 0.95564 0.96398 0.84490 1.20944 0.90844 1.45138 0.97938 0.89852 1.24849 0.94708 0.94955 0.98407 1.69863 1.03646 1.48393 1.31439 0.86984 0.79353 0.79302 0.84838 1.20119 1.21261 1.19264 1.22044 0.92978 0.91219 1.01617 1.19344 0.87868 0.92808 1.06630 1.29437 0.94677 0.93442 0.92397 1.81220 1.11721 1.10431 1.09907 0.92459 0.93668 0.91134 0.92598 0.88596 0.88320 0.89942 0.80821 0.84342 0.88079 0.92938 0.98818 0.95184 0.92578 0.94576 0.90006 0.86676 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.15 0.37 -1.65 16 2 C -0.14 -1.97 6.26 -26.73 -0.17 -2.14 16 3 C 0.14 1.94 6.24 -4.04 -0.03 1.91 16 4 N -0.35 -5.40 3.61 -57.14 -0.21 -5.61 16 5 N -0.31 -4.87 12.58 30.63 0.39 -4.49 16 6 C 0.04 0.53 12.03 -17.36 -0.21 0.32 16 7 C -0.29 -3.96 9.30 -40.01 -0.37 -4.33 16 8 C 0.11 1.67 5.73 -82.27 -0.47 1.20 16 9 C 0.12 1.84 4.96 -4.98 -0.02 1.82 16 10 N -0.52 -8.36 4.26 -237.52 -1.01 -9.37 16 11 C 0.16 3.08 3.65 -4.98 -0.02 3.06 16 12 C -0.51 -12.04 9.17 -34.44 -0.32 -12.36 16 13 H 0.08 2.10 7.89 -52.48 -0.41 1.69 16 14 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 15 N -0.89 -24.51 13.96 55.43 0.77 -23.74 16 16 Si 0.87 19.22 27.37 -169.99 -4.65 14.57 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.27 -5.69 6.69 56.52 0.38 -5.31 16 20 C 0.05 0.70 4.78 -3.82 -0.02 0.69 16 21 C -0.03 -0.33 5.77 -29.52 -0.17 -0.50 16 22 C 0.22 3.03 15.44 -20.72 -0.32 2.71 16 23 N -0.46 -7.36 18.55 42.20 0.78 -6.58 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.58 8.03 -51.93 -0.42 1.16 16 29 H 0.10 1.47 7.15 -51.93 -0.37 1.09 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 1.72 6.41 -51.93 -0.33 1.39 16 34 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 35 H -0.01 -0.12 7.40 -51.93 -0.38 -0.50 16 36 H 0.03 0.58 5.40 -51.93 -0.28 0.30 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.04 0.49 8.05 -51.93 -0.42 0.07 16 39 H 0.08 1.10 5.82 -51.93 -0.30 0.80 16 40 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.11 1.42 6.52 -51.93 -0.34 1.08 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -28.03 344.01 -6.81 -34.84 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.22 Total: 2.69 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.84 Total: -7.50 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.72 Total: -49.78 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.65 Total: 14.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.03 -6.81 -34.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597076045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.611 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds