Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46955 * 2 1 4 4 N 1.46497 * 109.47178 * 180.02562 * 3 2 1 5 5 N 1.40081 * 126.03799 * 269.68996 * 4 3 2 6 6 C 1.30842 * 108.20891 * 179.85408 * 5 4 3 7 7 C 1.39872 * 108.19901 * 0.40366 * 6 5 4 8 8 C 1.34953 * 126.03898 * 90.00092 * 4 3 2 9 9 C 1.50692 * 126.12405 * 359.95504 * 8 4 3 10 10 N 1.46900 * 109.47367 * 275.00028 * 9 8 4 11 11 C 1.46897 * 111.00115 * 170.00235 * 10 9 8 12 12 C 1.50699 * 109.47359 * 284.32777 * 11 10 9 13 13 H 1.08004 * 119.99690 * 4.94240 * 12 11 10 14 14 C 1.37877 * 120.00350 * 184.95066 * 12 11 10 15 15 N 1.31512 * 119.99924 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99931 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46949 * 90.00123 * 16 14 12 18 18 H 1.48494 * 109.47027 * 209.99862 * 16 14 12 19 19 H 1.48499 * 109.47081 * 330.00314 * 16 14 12 20 20 C 1.46906 * 110.99965 * 293.95537 * 10 9 8 21 21 C 1.52998 * 109.46834 * 164.04237 * 20 10 9 22 22 C 1.47204 * 109.46875 * 179.49345 * 21 20 10 23 23 N 7.01389 * 137.11641 * 220.78767 * 2 1 3 24 24 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47154 * 299.99635 * 1 2 3 26 26 H 1.09002 * 109.47548 * 60.00415 * 1 2 3 27 27 H 1.08995 * 109.47763 * 120.00214 * 2 1 3 28 28 H 1.09005 * 109.47279 * 240.00101 * 2 1 3 29 29 H 1.09004 * 109.47084 * 299.99826 * 3 2 1 30 30 H 1.08996 * 109.46892 * 60.00204 * 3 2 1 31 31 H 1.08001 * 125.89965 * 180.14889 * 6 5 4 32 32 H 1.08004 * 126.03725 * 179.74107 * 7 6 5 33 33 H 1.09004 * 109.47696 * 35.00244 * 9 8 4 34 34 H 1.09002 * 109.47395 * 155.00171 * 9 8 4 35 35 H 1.08995 * 109.47352 * 44.32648 * 11 10 9 36 36 H 1.09001 * 109.47321 * 164.32581 * 11 10 9 37 37 H 0.97006 * 119.99843 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.47375 * 284.04295 * 20 10 9 39 39 H 1.08998 * 109.46978 * 44.04578 * 20 10 9 40 40 H 1.09002 * 109.47348 * 299.49386 * 21 20 10 41 41 H 1.08996 * 109.47528 * 59.49405 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3295 1.4486 1.1318 6 6 5.5749 1.4434 0.7306 7 6 5.5833 1.4432 -0.6680 8 6 4.2984 1.4428 -1.0922 9 6 3.8362 1.4421 -2.5265 10 7 3.5720 0.0621 -2.9552 11 6 2.8981 0.0361 -4.2602 12 6 1.4505 0.4167 -4.0857 13 1 1.0877 0.7313 -3.1183 14 6 0.5891 0.3632 -5.1609 15 7 -0.6744 0.6949 -5.0085 16 14 1.2166 -0.1805 -6.8343 17 1 1.0721 -1.6528 -6.9626 18 1 0.4284 0.4889 -7.9000 19 1 2.6482 0.1901 -6.9704 20 6 4.8116 -0.7257 -2.9870 21 6 4.4676 -2.2155 -3.0424 22 6 5.7096 -3.0045 -3.0865 23 7 6.6693 -3.6138 -3.1180 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 6.4459 1.4436 1.3692 32 1 6.4605 1.4435 -1.2982 33 1 2.9231 2.0309 -2.6144 34 1 4.6109 1.8767 -3.1582 35 1 3.3814 0.7444 -4.9329 36 1 2.9617 -0.9670 -4.6821 37 1 -1.2805 0.6569 -5.7649 38 1 5.3923 -0.4539 -3.8684 39 1 5.3955 -0.5208 -2.0897 40 1 3.8946 -2.4893 -2.1565 41 1 3.8761 -2.4190 -3.9349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597076045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = 83.503727 kcal Electronic energy + Delta-G solvation = -21904.717369 eV Core-core repulsion = 18820.731434 eV Total energy + Delta-G solvation = -3083.985935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12480 -38.90699 -37.40757 -36.11435 -34.59229 -33.04069 -32.04649 -31.54526 -29.15867 -27.06292 -26.46229 -24.49749 -22.82041 -21.97833 -21.77961 -20.27260 -18.90451 -18.46894 -17.61572 -16.80221 -16.20019 -15.99228 -15.83425 -15.67141 -15.33619 -14.97203 -14.74737 -14.50276 -14.37093 -14.10557 -13.80021 -13.67653 -13.49661 -13.29856 -12.92652 -12.85216 -12.68212 -12.46739 -12.32829 -12.20069 -12.10341 -11.83517 -11.59258 -11.53330 -11.39701 -11.31350 -10.61895 -10.12352 -9.35373 -9.00456 -8.12496 -6.12419 1.01803 1.44116 1.48563 1.54353 1.73022 1.74040 1.80992 2.01640 2.45961 2.89802 3.22643 3.52025 3.76051 3.85450 4.08907 4.13446 4.19833 4.26408 4.32769 4.42585 4.61506 4.64753 4.65704 4.77458 4.85878 4.91545 4.94056 4.98692 5.03902 5.10233 5.16877 5.19773 5.37131 5.44664 5.50924 5.69822 5.90632 6.05735 6.22805 6.30597 6.58494 6.71198 6.93924 6.96625 7.50234 9.02753 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.007383 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.175900 B = 3791.546932 C = 5164.264269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.138 3.862 4 N -0.360 5.360 5 N -0.333 5.333 6 C 0.042 3.958 7 C -0.282 4.282 8 C 0.100 3.900 9 C 0.125 3.875 10 N -0.522 5.522 11 C 0.165 3.835 12 C -0.497 4.497 13 H 0.055 0.945 14 C 0.016 3.984 15 N -0.945 5.945 16 Si 0.925 3.075 17 H -0.269 1.269 18 H -0.297 1.297 19 H -0.248 1.248 20 C 0.054 3.946 21 C -0.019 4.019 22 C 0.243 3.757 23 N -0.493 5.493 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.207 0.793 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.067 0.933 35 H -0.006 1.006 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 0.505 6.893 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.017 3.983 4 N -0.141 5.141 5 N -0.155 5.155 6 C -0.143 4.143 7 C -0.312 4.312 8 C -0.030 4.030 9 C -0.004 4.004 10 N -0.246 5.246 11 C 0.038 3.962 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.181 4.181 15 N -0.587 5.587 16 Si 0.750 3.250 17 H -0.194 1.194 18 H -0.224 1.224 19 H -0.171 1.171 20 C -0.075 4.075 21 C -0.059 4.059 22 C -0.074 4.074 23 N -0.171 5.171 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.224 0.776 32 H 0.178 0.822 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.012 0.988 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.143 0.857 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.633 -0.592 8.108 11.858 hybrid contribution 0.282 0.464 -2.203 2.269 sum 8.915 -0.128 5.904 10.694 Atomic orbital electron populations 1.21570 0.94291 1.02251 1.01546 1.21730 0.96623 0.95201 1.02706 1.21749 0.73688 0.99199 1.03700 1.48743 1.06650 1.55615 1.03126 1.77272 1.02694 1.26271 1.09241 1.24246 0.95399 0.99210 0.95455 1.21447 0.96148 1.18238 0.95349 1.21176 0.91382 1.00075 0.90328 1.20488 1.00868 0.91063 0.87977 1.61705 1.21990 1.10614 1.30289 1.20116 0.93181 0.96742 0.86151 1.21229 0.92983 1.42875 0.96430 0.92721 1.25597 0.94774 0.95689 1.02077 1.70022 1.05184 1.51185 1.32266 0.86056 0.79610 0.78980 0.80317 1.19411 1.22403 1.17111 1.22057 0.91770 0.91262 1.02421 1.19341 0.87304 0.91903 1.07360 1.29475 0.94179 0.92579 0.91139 1.81257 1.12897 1.11655 1.11305 0.92138 0.91578 0.93919 0.92210 0.90755 0.89676 0.88802 0.77596 0.82227 0.90513 0.91510 0.98797 0.93868 0.93033 0.93610 0.89304 0.85717 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.12 -3.60 6.26 30.59 0.19 -3.41 16 3 C 0.14 3.98 6.24 86.38 0.54 4.52 16 4 N -0.36 -10.81 3.61 -334.70 -1.21 -12.02 16 5 N -0.33 -9.97 12.58 -57.02 -0.72 -10.69 16 6 C 0.04 1.02 12.03 85.24 1.03 2.04 16 7 C -0.28 -6.95 9.30 21.99 0.20 -6.74 16 8 C 0.10 2.83 5.73 41.40 0.24 3.07 16 9 C 0.13 3.74 4.96 85.55 0.42 4.16 16 10 N -0.52 -16.07 4.26 -905.38 -3.85 -19.92 16 11 C 0.16 6.15 3.65 85.56 0.31 6.46 16 12 C -0.50 -23.64 9.17 25.60 0.23 -23.40 16 13 H 0.05 2.87 7.89 -2.91 -0.02 2.85 16 14 C 0.02 0.82 5.47 84.66 0.46 1.28 16 15 N -0.95 -53.42 13.96 21.45 0.30 -53.12 16 16 Si 0.92 39.09 27.37 68.60 1.88 40.97 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.25 -9.55 6.69 99.48 0.67 -8.89 16 20 C 0.05 1.34 4.78 86.30 0.41 1.75 16 21 C -0.02 -0.42 5.77 28.79 0.17 -0.25 16 22 C 0.24 6.15 15.44 89.43 1.38 7.53 16 23 N -0.49 -14.97 18.55 20.02 0.37 -14.60 16 24 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.48 8.03 -2.38 -0.02 2.46 16 29 H 0.08 2.67 7.15 -2.38 -0.02 2.65 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.08 2.66 6.41 -2.38 -0.02 2.65 16 34 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 35 H -0.01 -0.22 7.40 -2.39 -0.02 -0.23 16 36 H 0.04 1.53 5.40 -2.39 -0.01 1.52 16 37 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 38 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 39 H 0.09 2.11 5.82 -2.39 -0.01 2.09 16 40 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.12 2.60 6.52 -2.39 -0.02 2.59 16 Total: -1.00 -60.47 344.01 4.05 -56.42 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.97 Total: 19.12 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 6.31 Total: -6.17 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -5.11 Total: -110.35 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.88 Total: 40.97 kcal Total: -60.47 4.05 -56.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597076045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.926 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds