Wall clock time and date at job start Mon Mar 30 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36739 * 127.13635 * 2 1 4 4 C 1.50700 * 126.34845 * 359.96604 * 3 2 1 5 5 C 1.52996 * 117.49972 * 189.03194 * 4 3 2 6 6 C 1.52998 * 117.49674 * 120.37170 * 4 3 2 7 7 N 1.30299 * 107.30499 * 180.22986 * 3 2 1 8 8 N 1.28526 * 110.05474 * 359.77240 * 7 3 2 9 9 C 1.31222 * 109.85714 * 0.02562 * 8 7 3 10 10 N 1.38584 * 126.47090 * 179.97438 * 9 8 7 11 11 C 1.46847 * 110.99794 * 295.23761 * 10 9 8 12 12 C 1.53038 * 109.52558 * 185.83984 * 11 10 9 13 13 C 1.53129 * 109.27838 * 300.82254 * 12 11 10 14 14 C 1.53117 * 109.21042 * 57.61912 * 13 12 11 15 15 H 1.09006 * 109.50721 * 62.31957 * 14 13 12 16 16 C 1.50694 * 109.50314 * 182.43811 * 14 13 12 17 17 H 1.07998 * 120.00284 * 120.00103 * 16 14 13 18 18 C 1.37886 * 120.00092 * 299.99930 * 16 14 13 19 19 N 1.31517 * 119.99545 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00301 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46838 * 59.99994 * 20 18 16 22 22 H 1.48500 * 109.47151 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46888 * 300.00176 * 20 18 16 24 24 C 1.46848 * 111.00442 * 59.44553 * 10 9 8 25 25 H 1.09001 * 109.47227 * 275.36885 * 1 2 3 26 26 H 1.08997 * 109.47099 * 35.37348 * 1 2 3 27 27 H 1.09010 * 109.47162 * 155.36734 * 1 2 3 28 28 H 1.08998 * 115.54496 * 334.70134 * 4 3 2 29 29 H 1.09005 * 117.49926 * 0.02562 * 5 4 3 30 30 H 1.09003 * 117.49776 * 145.01861 * 5 4 3 31 31 H 1.08998 * 117.49470 * 214.97687 * 6 4 3 32 32 H 1.08995 * 117.50019 * 0.02562 * 6 4 3 33 33 H 1.09005 * 109.46179 * 65.82568 * 11 10 9 34 34 H 1.08998 * 109.46600 * 305.85706 * 11 10 9 35 35 H 1.09002 * 109.50810 * 180.88223 * 12 11 10 36 36 H 1.09003 * 109.53295 * 60.78032 * 12 11 10 37 37 H 1.08995 * 109.52079 * 177.55608 * 13 12 11 38 38 H 1.09000 * 109.52227 * 297.68695 * 13 12 11 39 39 H 0.96997 * 119.99896 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.46571 * 294.18321 * 24 10 9 41 41 H 1.09007 * 109.45734 * 54.15478 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0007 5 6 2.9463 3.5931 -0.2136 6 6 2.3186 3.4076 1.1701 7 7 3.5162 0.6480 -0.0050 8 7 3.5212 -0.6372 -0.0033 9 6 2.2888 -1.0877 0.0023 10 7 1.8977 -2.4173 0.0052 11 6 2.3048 -3.0881 -1.2361 12 6 1.7326 -4.5073 -1.2618 13 6 2.2498 -5.2830 -0.0470 14 6 1.8554 -4.5384 1.2314 15 1 0.7689 -4.4930 1.3058 16 6 2.4126 -5.2644 2.4287 17 1 3.1009 -4.7625 3.0925 18 6 2.0435 -6.5696 2.6767 19 7 1.2057 -7.1810 1.8680 20 14 2.7346 -7.4699 4.1604 21 1 2.3524 -6.7472 5.4001 22 1 2.1864 -8.8494 4.2019 23 1 4.2149 -7.5289 4.0582 24 6 2.4228 -3.1178 1.1841 25 1 -0.3634 0.0962 1.0232 26 1 -0.3633 0.8379 -0.5949 27 1 -0.3634 -0.9342 -0.4284 28 1 0.8762 2.7326 -0.4215 29 1 3.9695 3.2443 -0.3536 30 1 2.6737 4.4873 -0.7742 31 1 1.6332 4.1799 1.5192 32 1 2.9291 2.9369 1.9406 33 1 3.3928 -3.1343 -1.2840 34 1 1.9271 -2.5288 -2.0920 35 1 2.0479 -5.0104 -2.1760 36 1 0.6440 -4.4620 -1.2282 37 1 1.8104 -6.2805 -0.0379 38 1 3.3354 -5.3635 -0.1015 39 1 0.9457 -8.0990 2.0427 40 1 3.5102 -3.1638 1.1249 41 1 2.1307 -2.5800 2.0861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597279300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:47 Heat of formation + Delta-G solvation = 91.058641 kcal Electronic energy + Delta-G solvation = -21737.232010 eV Core-core repulsion = 18653.573680 eV Total energy + Delta-G solvation = -3083.658329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.06031 -39.97962 -38.03998 -36.04532 -35.56814 -33.59699 -31.85995 -30.23561 -28.44477 -27.02552 -25.40475 -25.07448 -23.35269 -23.25910 -22.10743 -21.30643 -20.22522 -18.81502 -18.04153 -17.43928 -17.30059 -16.60504 -16.47309 -15.69444 -15.43216 -15.27586 -14.59705 -14.51324 -14.40351 -14.14214 -13.94914 -13.53517 -13.09025 -12.86955 -12.74247 -12.69342 -12.63035 -12.35476 -12.04055 -11.96353 -11.83062 -11.71866 -11.48318 -11.36205 -11.11787 -11.06127 -10.78960 -10.42067 -9.93207 -9.79252 -8.11050 -6.24574 0.60350 1.21960 1.41832 1.42881 1.50592 1.64615 2.41462 2.74626 2.94135 3.16478 3.26062 3.64773 3.86623 3.94775 3.96449 4.08711 4.09934 4.20831 4.33153 4.36625 4.48105 4.51946 4.64048 4.67644 4.78747 4.81051 4.82196 4.93638 4.96360 5.01849 5.06524 5.17000 5.26437 5.30701 5.42411 5.59149 5.62518 5.72514 5.96756 6.09809 6.28204 6.35912 6.83563 7.42860 7.63406 8.93570 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.004214 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.920414 B = 6643.307871 C = 7066.280432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.464 5.464 3 C 0.213 3.787 4 C -0.094 4.094 5 C -0.145 4.145 6 C -0.150 4.150 7 N -0.329 5.329 8 N -0.352 5.352 9 C 0.342 3.658 10 N -0.461 5.461 11 C 0.079 3.921 12 C -0.104 4.104 13 C -0.107 4.107 14 C 0.061 3.939 15 H 0.011 0.989 16 C -0.542 4.542 17 H 0.045 0.955 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.275 1.275 24 C 0.100 3.900 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.159 0.841 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.021 0.979 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 19.012 -6.546 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 C -0.055 4.055 4 C -0.115 4.115 5 C -0.182 4.182 6 C -0.188 4.188 7 N -0.169 5.169 8 N -0.196 5.196 9 C -0.015 4.015 10 N -0.187 5.187 11 C -0.048 4.048 12 C -0.142 4.142 13 C -0.145 4.145 14 C 0.042 3.958 15 H 0.029 0.971 16 C -0.581 4.581 17 H 0.063 0.937 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.026 4.026 25 H 0.108 0.892 26 H 0.141 0.859 27 H 0.113 0.887 28 H 0.176 0.824 29 H 0.103 0.897 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.297 18.784 -6.569 20.358 hybrid contribution 0.004 -1.151 0.974 1.508 sum -4.293 17.633 -5.596 18.991 Atomic orbital electron populations 1.22382 0.72544 1.06559 1.05355 1.46376 1.10395 1.04852 1.53937 1.24549 0.86259 0.91746 1.02930 1.20431 1.02187 0.80487 1.08358 1.23100 0.97018 0.98690 0.99420 1.23143 1.03395 1.01005 0.91237 1.73830 1.19417 1.02813 1.20847 1.74551 1.19065 1.04224 1.21731 1.22587 0.85729 0.89360 1.03845 1.58890 1.59128 0.95156 1.05502 1.22097 0.98079 0.95570 0.89015 1.21599 1.00832 0.92905 0.98838 1.21512 0.97732 1.01026 0.94209 1.18573 0.95116 0.88299 0.93844 0.97060 1.21367 1.27796 0.98369 1.10530 0.93659 1.25603 0.95140 0.97970 0.98983 1.69980 1.34032 1.12637 1.38097 0.85713 0.78699 0.77754 0.80097 1.19809 1.20417 1.20058 1.22012 0.96145 0.95783 0.88703 0.89200 0.85861 0.88733 0.82364 0.89738 0.84623 0.84511 0.90632 0.95073 0.89756 0.89938 0.91508 0.91185 0.95932 0.92767 0.96107 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 11.01 127.77 1.41 2.75 16 2 N -0.46 -13.47 3.21 -538.17 -1.73 -15.20 16 3 C 0.21 6.07 7.59 137.64 1.04 7.12 16 4 C -0.09 -1.60 6.01 -11.54 -0.07 -1.67 16 5 C -0.14 -2.16 10.15 30.62 0.31 -1.85 16 6 C -0.15 -2.19 10.24 30.62 0.31 -1.88 16 7 N -0.33 -12.25 11.79 -49.53 -0.58 -12.84 16 8 N -0.35 -14.79 12.18 -58.00 -0.71 -15.50 16 9 C 0.34 12.88 6.42 260.11 1.67 14.55 16 10 N -0.46 -17.96 4.64 -706.14 -3.28 -21.24 16 11 C 0.08 2.86 5.39 86.33 0.47 3.32 16 12 C -0.10 -3.84 6.10 30.65 0.19 -3.66 16 13 C -0.11 -5.04 5.02 30.68 0.15 -4.89 16 14 C 0.06 3.09 2.27 -11.49 -0.03 3.07 16 15 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 16 C -0.54 -30.49 8.57 25.60 0.22 -30.27 16 17 H 0.05 2.56 7.75 -2.91 -0.02 2.54 16 18 C 0.02 1.26 5.30 84.66 0.45 1.71 16 19 N -0.91 -51.50 11.35 21.45 0.24 -51.26 16 20 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.10 4.63 4.58 86.33 0.40 5.02 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.12 1.24 7.64 -2.39 -0.02 1.22 16 27 H 0.09 1.89 8.11 -2.38 -0.02 1.87 16 28 H 0.16 1.51 7.67 -2.39 -0.02 1.49 16 29 H 0.08 1.74 7.92 -2.38 -0.02 1.72 16 30 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 3.67 6.15 -2.39 -0.01 3.66 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 2.26 8.10 -2.38 -0.02 2.24 16 Total: -1.00 -70.67 333.84 3.50 -67.17 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.01 Total: 9.65 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.52 Total: -6.68 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.05 Total: -116.03 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.67 3.50 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597279300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.231 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds