Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00078 * 2 1 4 4 N 1.46498 * 109.47056 * 125.40447 * 3 2 1 5 5 C 1.36739 * 127.13868 * 275.60782 * 4 3 2 6 6 C 1.50701 * 126.34650 * 0.05051 * 5 4 3 7 7 N 1.30295 * 107.30588 * 180.02562 * 5 4 3 8 8 N 1.28528 * 110.05586 * 359.72558 * 7 5 4 9 9 C 1.31221 * 109.85756 * 0.45188 * 8 7 5 10 10 N 1.38573 * 126.47334 * 179.81801 * 9 8 7 11 11 C 1.46852 * 110.99719 * 102.61471 * 10 9 8 12 12 C 1.53031 * 109.52478 * 174.16166 * 11 10 9 13 13 C 1.53123 * 109.27977 * 59.17690 * 12 11 10 14 14 C 1.53119 * 109.16124 * 302.35286 * 13 12 11 15 15 H 1.09001 * 109.50202 * 297.70397 * 14 13 12 16 16 C 1.50698 * 109.50224 * 177.63421 * 14 13 12 17 17 H 1.08007 * 119.99702 * 240.07243 * 16 14 13 18 18 C 1.37876 * 120.00386 * 60.07156 * 16 14 13 19 19 N 1.31509 * 119.99977 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00023 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47190 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47007 * 120.00313 * 20 18 16 23 23 H 1.48505 * 109.47110 * 240.00178 * 20 18 16 24 24 C 1.46847 * 111.00111 * 338.40770 * 10 9 8 25 25 H 1.08004 * 119.99982 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99749 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47037 * 5.40540 * 3 2 1 29 29 H 1.08999 * 109.47461 * 245.40782 * 3 2 1 30 30 H 1.09002 * 109.47157 * 90.00365 * 6 5 4 31 31 H 1.09005 * 109.47317 * 210.00196 * 6 5 4 32 32 H 1.08994 * 109.47297 * 330.00351 * 6 5 4 33 33 H 1.09005 * 109.46115 * 54.14504 * 11 10 9 34 34 H 1.08997 * 109.46055 * 294.17885 * 11 10 9 35 35 H 1.09005 * 109.50465 * 299.24655 * 12 11 10 36 36 H 1.09000 * 109.50802 * 179.11778 * 12 11 10 37 37 H 1.08992 * 109.52505 * 182.44224 * 13 12 11 38 38 H 1.09011 * 109.57133 * 62.28216 * 13 12 11 39 39 H 0.97004 * 120.00148 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.46170 * 65.81788 * 24 10 9 41 41 H 1.08996 * 109.46245 * 305.85364 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0006 1.3278 1.1258 5 6 2.7306 1.6856 2.4176 6 6 1.3984 2.1350 2.9601 7 7 3.8385 1.5653 3.0928 8 7 4.7815 1.1536 2.3226 9 6 4.3243 0.9970 1.1027 10 7 5.0476 0.5705 0.0003 11 6 4.7590 -0.8363 -0.3063 12 6 5.4593 -1.2299 -1.6088 13 6 6.9683 -1.0209 -1.4547 14 6 7.2383 0.4409 -1.0879 15 1 6.8945 1.0880 -1.8948 16 6 8.7169 0.6419 -0.8773 17 1 9.0847 0.9837 0.0790 18 6 9.6003 0.3896 -1.9054 19 7 9.1526 -0.0260 -3.0700 20 14 11.4332 0.6381 -1.6441 21 1 11.6762 1.1080 -0.2565 22 1 12.1433 -0.6475 -1.8634 23 1 11.9373 1.6522 -2.6048 24 6 6.4865 0.7862 0.1995 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3591 2.1313 0.0968 29 1 2.6156 1.4059 -0.9344 30 1 0.8378 1.2684 3.3108 31 1 1.5575 2.8246 3.7891 32 1 0.8361 2.6370 2.1728 33 1 3.6829 -0.9704 -0.4176 34 1 5.1213 -1.4667 0.5057 35 1 5.0874 -0.6091 -2.4240 36 1 5.2577 -2.2785 -1.8280 37 1 7.4669 -1.2589 -2.3942 38 1 7.3482 -1.6705 -0.6660 39 1 9.7740 -0.2031 -3.7934 40 1 6.8407 0.1481 1.0092 41 1 6.6652 1.8304 0.4556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597287432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = 83.872913 kcal Electronic energy + Delta-G solvation = -21989.618865 eV Core-core repulsion = 18905.648939 eV Total energy + Delta-G solvation = -3083.969926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.01109 -39.98222 -37.22328 -35.80395 -33.90454 -33.77742 -32.09702 -31.81675 -28.26246 -27.59487 -27.03791 -25.40658 -23.41496 -22.40309 -22.03606 -20.78488 -20.35757 -18.87089 -18.03893 -17.45227 -17.09724 -16.53117 -16.07345 -15.64360 -15.31119 -15.21776 -14.66858 -14.55024 -14.46628 -14.25405 -13.70596 -13.61747 -13.44457 -13.09806 -12.88903 -12.76253 -12.62588 -12.60641 -12.42945 -11.92874 -11.85075 -11.67391 -11.38067 -11.18466 -11.05044 -10.83876 -10.53165 -10.47735 -10.39564 -9.36341 -8.11398 -6.24301 0.72016 0.95324 1.39816 1.42021 1.53465 1.60121 1.78843 2.42107 2.76795 3.16353 3.48589 3.68663 3.76491 3.86074 3.99175 4.05090 4.13619 4.36468 4.37426 4.41755 4.52640 4.58508 4.72196 4.74709 4.80523 4.89627 4.93458 4.95688 5.01942 5.03888 5.09348 5.25844 5.42246 5.58718 5.60699 5.63145 5.68477 5.77227 5.96707 6.09884 6.29407 6.36286 6.84062 7.43240 7.74010 8.93835 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.004658 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.666017 B = 6009.338232 C = 6741.499893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.206 4.206 3 C 0.133 3.867 4 N -0.467 5.467 5 C 0.184 3.816 6 C -0.057 4.057 7 N -0.338 5.338 8 N -0.367 5.367 9 C 0.351 3.649 10 N -0.456 5.456 11 C 0.071 3.929 12 C -0.105 4.105 13 C -0.107 4.107 14 C 0.058 3.942 15 H 0.008 0.992 16 C -0.539 4.539 17 H 0.045 0.955 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.106 3.894 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.217 0.244 3.840 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.225 4.225 3 C 0.012 3.988 4 N -0.161 5.161 5 C -0.085 4.085 6 C -0.116 4.116 7 N -0.178 5.178 8 N -0.210 5.210 9 C -0.007 4.007 10 N -0.181 5.181 11 C -0.055 4.055 12 C -0.142 4.142 13 C -0.145 4.145 14 C 0.039 3.961 15 H 0.026 0.974 16 C -0.577 4.577 17 H 0.063 0.937 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.778 3.222 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.021 4.021 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.334 0.496 4.400 21.789 hybrid contribution 1.130 -0.366 -0.490 1.284 sum -20.205 0.129 3.910 20.580 Atomic orbital electron populations 1.24203 0.94316 1.04241 0.94103 1.22972 0.97114 0.96822 1.05596 1.21272 0.91359 0.98940 0.87225 1.46498 1.08251 1.50266 1.11067 1.25765 1.00012 1.01890 0.80795 1.20441 0.85415 1.03179 1.02546 1.73864 0.97442 1.19559 1.26885 1.74575 1.24986 1.22096 0.99377 1.22779 0.84255 1.02328 0.91348 1.58809 1.08737 1.21475 1.29040 1.22287 1.01189 0.84045 0.97973 1.21600 0.95537 1.01423 0.95671 1.21513 0.94237 0.97356 1.01390 1.18614 0.92817 0.93822 0.90884 0.97407 1.21424 0.92766 1.45434 0.98125 0.93676 1.25600 1.02737 0.94601 0.94798 1.69992 1.35632 1.46128 1.03126 0.85593 0.80541 0.77951 0.78099 1.19839 1.20214 1.20307 1.21882 0.82147 0.99268 0.98827 0.86547 0.85584 0.88359 0.85094 0.88176 0.87959 0.88228 0.87583 0.88695 0.95414 0.91524 0.89630 0.91177 0.95770 0.92799 0.95714 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 14.32 67.78 0.97 -0.15 16 2 C -0.21 -3.09 9.40 25.65 0.24 -2.85 16 3 C 0.13 2.40 6.20 85.63 0.53 2.93 16 4 N -0.47 -12.99 2.79 -518.92 -1.45 -14.44 16 5 C 0.18 5.03 8.07 137.64 1.11 6.14 16 6 C -0.06 -0.78 10.26 71.24 0.73 -0.05 16 7 N -0.34 -12.80 12.18 -49.54 -0.60 -13.40 16 8 N -0.37 -15.87 11.48 -58.00 -0.67 -16.53 16 9 C 0.35 13.27 6.86 260.11 1.79 15.05 16 10 N -0.46 -17.93 4.63 -706.16 -3.27 -21.21 16 11 C 0.07 2.45 5.39 86.32 0.47 2.91 16 12 C -0.10 -3.76 6.09 30.65 0.19 -3.58 16 13 C -0.11 -5.03 5.03 30.68 0.15 -4.88 16 14 C 0.06 2.99 2.26 -11.49 -0.03 2.97 16 15 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 16 C -0.54 -30.88 8.56 25.60 0.22 -30.66 16 17 H 0.04 2.62 7.75 -2.91 -0.02 2.60 16 18 C 0.02 1.24 5.30 84.66 0.45 1.69 16 19 N -0.91 -52.03 11.36 21.45 0.24 -51.78 16 20 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C 0.11 5.01 4.14 86.32 0.36 5.37 16 25 H 0.12 0.79 8.06 -2.91 -0.02 0.77 16 26 H 0.13 0.49 7.84 -2.91 -0.02 0.46 16 27 H 0.10 1.81 6.38 -2.91 -0.02 1.79 16 28 H 0.13 1.39 7.08 -2.39 -0.02 1.37 16 29 H 0.10 2.08 8.10 -2.39 -0.02 2.07 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.11 0.77 7.39 -2.39 -0.02 0.75 16 33 H 0.09 2.63 5.63 -2.38 -0.01 2.62 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.07 3.67 6.15 -2.39 -0.01 3.66 16 38 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.02 1.24 8.09 -2.38 -0.02 1.22 16 41 H 0.05 2.39 8.10 -2.39 -0.02 2.37 16 Total: -1.00 -73.26 331.06 4.46 -68.80 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.01 Total: 7.10 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 7.18 Total: -5.10 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -5.75 Total: -117.37 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -73.26 4.46 -68.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.668 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds