Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50692 * 119.99913 * 2 1 4 4 N 1.46502 * 109.47265 * 124.13583 * 3 2 1 5 5 C 1.36739 * 127.13500 * 88.44382 * 4 3 2 6 6 C 1.50696 * 126.34878 * 0.02562 * 5 4 3 7 7 N 1.30297 * 107.30264 * 180.28376 * 5 4 3 8 8 N 1.28529 * 110.05394 * 359.55626 * 7 5 4 9 9 C 1.31218 * 109.86055 * 0.45529 * 8 7 5 10 10 N 1.38585 * 126.47356 * 179.69469 * 9 8 7 11 11 C 1.46847 * 110.99457 * 272.31242 * 10 9 8 12 12 C 1.53045 * 109.52079 * 185.83815 * 11 10 9 13 13 C 1.53118 * 109.27918 * 300.82751 * 12 11 10 14 14 C 1.53117 * 109.16103 * 57.65023 * 13 12 11 15 15 H 1.09001 * 109.50419 * 62.28713 * 14 13 12 16 16 C 1.50706 * 109.50468 * 182.40688 * 14 13 12 17 17 H 1.07992 * 120.00106 * 119.80403 * 16 14 13 18 18 C 1.37882 * 119.99427 * 299.80743 * 16 14 13 19 19 N 1.31510 * 120.00152 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99616 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47489 * 59.99547 * 20 18 16 22 22 H 1.48495 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46711 * 299.99540 * 20 18 16 24 24 C 1.46843 * 111.00093 * 36.52670 * 10 9 8 25 25 H 1.08004 * 120.00363 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00109 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00061 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47197 * 4.13444 * 3 2 1 29 29 H 1.09006 * 109.47527 * 244.13552 * 3 2 1 30 30 H 1.08997 * 109.47213 * 90.00410 * 6 5 4 31 31 H 1.09001 * 109.47058 * 329.99943 * 6 5 4 32 32 H 1.08999 * 109.46771 * 210.00282 * 6 5 4 33 33 H 1.08990 * 109.46870 * 305.85522 * 11 10 9 34 34 H 1.09001 * 109.46256 * 65.83299 * 11 10 9 35 35 H 1.08999 * 109.50393 * 180.88380 * 12 11 10 36 36 H 1.09005 * 109.53213 * 60.78408 * 12 11 10 37 37 H 1.09006 * 109.52274 * 297.74757 * 13 12 11 38 38 H 1.08997 * 109.57675 * 177.58920 * 13 12 11 39 39 H 0.97002 * 119.99723 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.46027 * 294.17511 * 24 10 9 41 41 H 1.08998 * 109.46109 * 54.15472 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9789 1.3405 1.1433 5 6 4.2667 0.8825 1.1841 6 6 5.0223 0.2392 0.0500 7 7 4.7175 1.1004 2.3870 8 7 3.8122 1.6689 3.1007 9 6 2.7232 1.8369 2.3883 10 7 1.5370 2.4096 2.8192 11 6 0.6588 1.4039 3.4305 12 6 -0.6937 2.0392 3.7612 13 6 -0.4802 3.2106 4.7238 14 6 0.4761 4.2200 4.0828 15 1 0.0290 4.6168 3.1713 16 6 0.7383 5.3476 5.0477 17 1 1.7446 5.5466 5.3851 18 6 -0.3069 6.1252 5.4996 19 7 -1.5323 5.8831 5.0883 20 14 0.0181 7.5233 6.6951 21 1 0.9490 8.4994 6.0741 22 1 -1.2617 8.2008 7.0240 23 1 0.6254 6.9814 7.9372 24 6 1.7947 3.5216 3.7430 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3574 2.1322 0.0741 29 1 2.6334 1.3956 -0.9247 30 1 5.5424 1.0075 -0.5220 31 1 4.3233 -0.2871 -0.6000 32 1 5.7477 -0.4681 0.4519 33 1 0.5118 0.5785 2.7341 34 1 1.1174 1.0294 4.3457 35 1 -1.3399 1.2966 4.2292 36 1 -1.1599 2.4015 2.8448 37 1 -0.0505 2.8427 5.6556 38 1 -1.4356 3.6935 4.9290 39 1 -2.2675 6.4303 5.4061 40 1 2.2480 3.1371 4.6566 41 1 2.4725 4.2343 3.2732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597287433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = 99.730989 kcal Electronic energy + Delta-G solvation = -22085.040771 eV Core-core repulsion = 19001.758503 eV Total energy + Delta-G solvation = -3083.282268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.73120 -38.29653 -36.21122 -33.96214 -32.86988 -32.22817 -30.82440 -29.96500 -27.04433 -26.72282 -25.00942 -23.76149 -21.64818 -21.16011 -20.80333 -19.94194 -18.58329 -17.32935 -16.37586 -16.18404 -15.56547 -15.20562 -14.62749 -14.22872 -13.95916 -13.74984 -13.65431 -13.05784 -12.84383 -12.74707 -12.59484 -12.41208 -12.39662 -11.84849 -11.71349 -11.28623 -10.93205 -10.80565 -10.73048 -10.31261 -10.23574 -9.99520 -9.90861 -9.76734 -9.55555 -9.22960 -9.02711 -8.70379 -8.33628 -7.99081 -5.99846 -4.05389 1.73081 1.97683 2.63650 3.09048 3.34172 3.37960 3.41946 4.14908 4.43364 4.46306 4.51785 4.64186 4.87200 4.99197 5.30346 5.30855 5.34074 5.38484 5.53594 5.59739 5.61675 5.76252 5.87802 5.94125 6.03045 6.22529 6.27131 6.39315 6.39948 6.43129 6.56081 6.68779 6.80904 6.91227 7.06974 7.30666 7.40594 7.72934 7.76481 8.00183 8.10709 8.43008 8.97426 9.02494 9.59131 11.06472 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.004954 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.375651 B = 5650.681448 C = 6372.653149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.188 4.188 3 C 0.140 3.860 4 N -0.469 5.469 5 C 0.160 3.840 6 C -0.060 4.060 7 N -0.290 5.290 8 N -0.318 5.318 9 C 0.370 3.630 10 N -0.464 5.464 11 C 0.073 3.927 12 C -0.114 4.114 13 C -0.114 4.114 14 C 0.057 3.943 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.065 3.935 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.082 3.918 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.044 0.956 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -12.483 -12.954 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.207 4.207 3 C 0.018 3.982 4 N -0.163 5.163 5 C -0.108 4.108 6 C -0.119 4.119 7 N -0.131 5.131 8 N -0.162 5.162 9 C 0.014 3.986 10 N -0.190 5.190 11 C -0.054 4.054 12 C -0.152 4.152 13 C -0.152 4.152 14 C 0.038 3.962 15 H 0.053 0.947 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.043 4.043 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.225 -12.172 -12.157 17.714 hybrid contribution -0.433 0.432 0.155 0.631 sum 3.792 -11.740 -12.002 17.212 Atomic orbital electron populations 1.24044 0.95591 1.02842 0.96277 1.23032 0.96457 0.97706 1.03533 1.20904 0.92480 0.97911 0.86934 1.46347 1.11976 1.46784 1.11229 1.24708 0.83586 1.04071 0.98411 1.20121 0.98920 1.00236 0.92600 1.73968 1.23697 1.14862 1.00592 1.74697 0.98957 1.17869 1.24641 1.22812 0.94680 0.97983 0.83139 1.58913 1.07178 1.09886 1.43043 1.22134 0.94034 0.92366 0.96883 1.21697 0.93642 0.98931 1.00966 1.21706 1.03922 0.93777 0.95752 1.18708 0.88709 0.92337 0.96441 0.94737 1.21060 0.93847 1.13763 1.26595 0.92616 1.24903 0.95080 0.97313 0.96361 1.69869 0.98978 1.39606 1.44384 0.86655 0.77363 0.82380 0.81602 1.20283 1.21325 1.20238 1.22400 1.01213 0.88673 0.92044 0.87484 0.87809 0.87066 0.87362 0.88437 0.89984 0.90781 0.88997 0.92261 0.94221 0.92737 0.91921 0.94621 0.88700 0.92973 0.93785 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 14.06 29.01 0.41 -0.91 16 2 C -0.19 -1.77 9.85 -36.03 -0.35 -2.13 16 3 C 0.14 1.50 6.31 -5.20 -0.03 1.47 16 4 N -0.47 -6.93 2.79 -115.37 -0.32 -7.26 16 5 C 0.16 2.32 8.07 -154.02 -1.24 1.08 16 6 C -0.06 -0.52 10.12 36.00 0.36 -0.15 16 7 N -0.29 -5.44 12.18 32.99 0.40 -5.04 16 8 N -0.32 -6.63 11.70 30.32 0.35 -6.28 16 9 C 0.37 6.91 6.71 -318.87 -2.14 4.78 16 10 N -0.46 -8.91 4.67 -174.55 -0.82 -9.73 16 11 C 0.07 1.29 5.40 -3.83 -0.02 1.27 16 12 C -0.11 -2.10 6.09 -26.65 -0.16 -2.27 16 13 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 14 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -24.83 11.36 55.43 0.63 -24.20 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.08 1.84 4.32 -3.84 -0.02 1.82 16 25 H 0.11 0.98 7.84 -52.48 -0.41 0.57 16 26 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.11 1.26 7.79 -51.93 -0.40 0.86 16 29 H 0.10 0.77 7.97 -51.93 -0.41 0.35 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.47 7.97 -51.93 -0.41 0.06 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.04 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.06 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -31.30 336.54 -10.18 -41.49 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.56 Total: -1.06 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.93 Total: -9.24 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.25 Total: -52.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.30 -10.18 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.218 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds