Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50692 * 119.99913 * 2 1 4 4 N 1.46502 * 109.47265 * 124.13583 * 3 2 1 5 5 C 1.36739 * 127.13500 * 88.44382 * 4 3 2 6 6 C 1.50696 * 126.34878 * 0.02562 * 5 4 3 7 7 N 1.30297 * 107.30264 * 180.28376 * 5 4 3 8 8 N 1.28529 * 110.05394 * 359.55626 * 7 5 4 9 9 C 1.31218 * 109.86055 * 0.45529 * 8 7 5 10 10 N 1.38585 * 126.47356 * 179.69469 * 9 8 7 11 11 C 1.46847 * 110.99457 * 272.31242 * 10 9 8 12 12 C 1.53045 * 109.52079 * 185.83815 * 11 10 9 13 13 C 1.53118 * 109.27918 * 300.82751 * 12 11 10 14 14 C 1.53117 * 109.16103 * 57.65023 * 13 12 11 15 15 H 1.09001 * 109.50419 * 62.28713 * 14 13 12 16 16 C 1.50706 * 109.50468 * 182.40688 * 14 13 12 17 17 H 1.07992 * 120.00106 * 119.80403 * 16 14 13 18 18 C 1.37882 * 119.99427 * 299.80743 * 16 14 13 19 19 N 1.31510 * 120.00152 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99616 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47489 * 59.99547 * 20 18 16 22 22 H 1.48495 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46711 * 299.99540 * 20 18 16 24 24 C 1.46843 * 111.00093 * 36.52670 * 10 9 8 25 25 H 1.08004 * 120.00363 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00109 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00061 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47197 * 4.13444 * 3 2 1 29 29 H 1.09006 * 109.47527 * 244.13552 * 3 2 1 30 30 H 1.08997 * 109.47213 * 90.00410 * 6 5 4 31 31 H 1.09001 * 109.47058 * 329.99943 * 6 5 4 32 32 H 1.08999 * 109.46771 * 210.00282 * 6 5 4 33 33 H 1.08990 * 109.46870 * 305.85522 * 11 10 9 34 34 H 1.09001 * 109.46256 * 65.83299 * 11 10 9 35 35 H 1.08999 * 109.50393 * 180.88380 * 12 11 10 36 36 H 1.09005 * 109.53213 * 60.78408 * 12 11 10 37 37 H 1.09006 * 109.52274 * 297.74757 * 13 12 11 38 38 H 1.08997 * 109.57675 * 177.58920 * 13 12 11 39 39 H 0.97002 * 119.99723 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.46027 * 294.17511 * 24 10 9 41 41 H 1.08998 * 109.46109 * 54.15472 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9789 1.3405 1.1433 5 6 4.2667 0.8825 1.1841 6 6 5.0223 0.2392 0.0500 7 7 4.7175 1.1004 2.3870 8 7 3.8122 1.6689 3.1007 9 6 2.7232 1.8369 2.3883 10 7 1.5370 2.4096 2.8192 11 6 0.6588 1.4039 3.4305 12 6 -0.6937 2.0392 3.7612 13 6 -0.4802 3.2106 4.7238 14 6 0.4761 4.2200 4.0828 15 1 0.0290 4.6168 3.1713 16 6 0.7383 5.3476 5.0477 17 1 1.7446 5.5466 5.3851 18 6 -0.3069 6.1252 5.4996 19 7 -1.5323 5.8831 5.0883 20 14 0.0181 7.5233 6.6951 21 1 0.9490 8.4994 6.0741 22 1 -1.2617 8.2008 7.0240 23 1 0.6254 6.9814 7.9372 24 6 1.7947 3.5216 3.7430 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3574 2.1322 0.0741 29 1 2.6334 1.3956 -0.9247 30 1 5.5424 1.0075 -0.5220 31 1 4.3233 -0.2871 -0.6000 32 1 5.7477 -0.4681 0.4519 33 1 0.5118 0.5785 2.7341 34 1 1.1174 1.0294 4.3457 35 1 -1.3399 1.2966 4.2292 36 1 -1.1599 2.4015 2.8448 37 1 -0.0505 2.8427 5.6556 38 1 -1.4356 3.6935 4.9290 39 1 -2.2675 6.4303 5.4061 40 1 2.2480 3.1371 4.6566 41 1 2.4725 4.2343 3.2732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597287433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = 83.161191 kcal Electronic energy + Delta-G solvation = -22085.759291 eV Core-core repulsion = 19001.758503 eV Total energy + Delta-G solvation = -3084.000789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.00853 -39.94059 -37.17340 -35.77825 -33.89064 -33.80045 -32.04063 -31.81342 -28.20487 -27.66389 -27.00542 -25.38462 -23.35182 -22.31659 -22.13098 -20.80167 -20.33204 -18.85962 -17.96099 -17.43197 -17.06617 -16.52472 -16.01641 -15.73795 -15.35761 -15.11882 -14.67526 -14.53341 -14.31811 -14.27056 -13.68805 -13.51645 -13.39304 -13.30670 -12.86749 -12.73086 -12.62328 -12.56467 -12.48150 -11.96663 -11.83105 -11.66504 -11.38698 -11.10645 -11.07443 -10.81498 -10.50315 -10.41032 -10.28771 -9.50937 -8.10374 -6.23314 0.69519 0.94983 1.42251 1.43063 1.50715 1.60615 1.77144 2.42618 2.80348 3.17334 3.50118 3.64123 3.86930 3.90194 4.04492 4.10670 4.19011 4.30735 4.41091 4.46169 4.54433 4.61494 4.71121 4.77388 4.81667 4.90561 4.95227 4.95756 5.00212 5.04812 5.11204 5.27333 5.43828 5.59220 5.61723 5.65846 5.71254 5.77262 5.98018 6.10818 6.31680 6.37365 6.84608 7.43965 7.71413 8.94375 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.004954 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.375651 B = 5650.681448 C = 6372.653149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.194 4.194 3 C 0.132 3.868 4 N -0.462 5.462 5 C 0.184 3.816 6 C -0.059 4.059 7 N -0.338 5.338 8 N -0.362 5.362 9 C 0.349 3.651 10 N -0.457 5.457 11 C 0.079 3.921 12 C -0.102 4.102 13 C -0.106 4.106 14 C 0.060 3.940 15 H 0.009 0.991 16 C -0.541 4.541 17 H 0.044 0.956 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.275 1.275 24 C 0.103 3.897 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.025 0.975 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.023 0.977 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -14.020 -14.907 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.213 4.213 3 C 0.012 3.988 4 N -0.155 5.155 5 C -0.085 4.085 6 C -0.118 4.118 7 N -0.178 5.178 8 N -0.205 5.205 9 C -0.009 4.009 10 N -0.182 5.182 11 C -0.048 4.048 12 C -0.140 4.140 13 C -0.145 4.145 14 C 0.041 3.959 15 H 0.027 0.973 16 C -0.580 4.580 17 H 0.063 0.937 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.200 1.200 24 C -0.024 4.024 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.218 -13.726 -14.137 20.151 hybrid contribution -0.401 0.874 0.659 1.166 sum 3.816 -12.852 -13.478 19.010 Atomic orbital electron populations 1.24204 0.95579 1.03433 0.95203 1.23024 0.96570 0.97294 1.04380 1.21267 0.92423 0.98458 0.86664 1.46571 1.12600 1.45639 1.10713 1.25819 0.83176 1.01114 0.98363 1.20469 0.99381 1.00901 0.91068 1.73882 1.24208 1.17051 1.02635 1.74562 1.00119 1.19119 1.26715 1.22676 0.94019 0.99482 0.84717 1.58835 1.07888 1.09655 1.41856 1.22129 0.93026 0.92626 0.96994 1.21580 0.94641 0.97742 1.00052 1.21508 1.01738 0.94942 0.96271 1.18585 0.89996 0.92483 0.94844 0.97256 1.21369 0.93585 1.15324 1.27676 0.93734 1.25585 0.94877 0.99402 0.97766 1.69976 0.99478 1.40289 1.45017 0.85728 0.77506 0.79601 0.79512 1.19960 1.20364 1.20009 1.21923 0.99270 0.89449 0.91709 0.88101 0.86105 0.85813 0.88583 0.84927 0.87932 0.87495 0.88034 0.89324 0.95690 0.89893 0.91401 0.95962 0.91210 0.92792 0.95851 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 14.06 67.78 0.95 -1.18 16 2 C -0.19 -2.98 9.85 25.64 0.25 -2.73 16 3 C 0.13 2.46 6.31 85.63 0.54 3.00 16 4 N -0.46 -12.82 2.79 -518.90 -1.45 -14.27 16 5 C 0.18 4.95 8.07 137.64 1.11 6.06 16 6 C -0.06 -0.79 10.12 71.23 0.72 -0.07 16 7 N -0.34 -12.58 12.18 -49.54 -0.60 -13.18 16 8 N -0.36 -15.40 11.70 -58.00 -0.68 -16.08 16 9 C 0.35 13.03 6.71 260.11 1.74 14.77 16 10 N -0.46 -17.72 4.67 -706.16 -3.30 -21.02 16 11 C 0.08 2.75 5.40 86.33 0.47 3.22 16 12 C -0.10 -3.68 6.09 30.65 0.19 -3.50 16 13 C -0.11 -5.00 5.03 30.67 0.15 -4.85 16 14 C 0.06 3.08 2.26 -11.49 -0.03 3.05 16 15 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 16 C -0.54 -30.70 8.56 25.60 0.22 -30.49 16 17 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 18 C 0.02 1.30 5.30 84.66 0.45 1.75 16 19 N -0.91 -51.61 11.36 21.45 0.24 -51.37 16 20 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 C 0.10 4.84 4.32 86.33 0.37 5.21 16 25 H 0.10 1.61 7.84 -2.91 -0.02 1.58 16 26 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 27 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.10 2.06 7.79 -2.39 -0.02 2.05 16 29 H 0.13 1.52 7.97 -2.38 -0.02 1.50 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.78 7.97 -2.39 -0.02 0.76 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.59 7.84 -2.39 -0.02 2.57 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 3.64 6.16 -2.39 -0.01 3.62 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.02 1.17 8.06 -2.39 -0.02 1.15 16 41 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -71.35 336.54 4.38 -66.97 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.99 Total: 8.45 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 7.14 Total: -5.73 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -5.78 Total: -115.92 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.35 4.38 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.136 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds