Wall clock time and date at job start Mon Mar 30 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46962 * 110.99654 * 293.79653 * 10 9 7 12 12 C 1.53050 * 109.36359 * 176.81137 * 11 10 9 13 13 N 1.46961 * 109.36177 * 58.39885 * 12 11 10 14 14 C 1.46899 * 110.99813 * 176.80963 * 13 12 11 15 15 C 1.50698 * 109.47218 * 293.80565 * 14 13 12 16 16 C 1.38887 * 120.33186 * 269.71967 * 15 14 13 17 17 C 1.38302 * 118.50673 * 179.78344 * 16 15 14 18 18 C 1.39149 * 119.09231 * 0.49039 * 17 16 15 19 19 N 1.38998 * 119.70367 * 179.77256 * 18 17 16 20 20 N 1.32394 * 120.58730 * 359.74896 * 18 17 16 21 21 C 1.31969 * 121.62518 * 0.02562 * 20 18 17 22 22 C 1.46954 * 110.88476 * 300.68100 * 13 12 11 23 23 C 1.46960 * 110.99909 * 169.99961 * 10 9 7 24 24 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 26 26 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 27 27 H 1.09002 * 109.48757 * 296.77631 * 11 10 9 28 28 H 1.09004 * 109.48878 * 56.84353 * 11 10 9 29 29 H 1.08998 * 109.48795 * 298.43294 * 12 11 10 30 30 H 1.08996 * 109.48853 * 178.36850 * 12 11 10 31 31 H 1.09001 * 109.47042 * 53.80024 * 14 13 12 32 32 H 1.08993 * 109.47252 * 173.80395 * 14 13 12 33 33 H 1.07995 * 120.74964 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.45691 * 180.21994 * 17 16 15 35 35 H 0.96997 * 120.00255 * 179.97438 * 19 18 17 36 36 H 0.97005 * 119.99850 * 359.97438 * 19 18 17 37 37 H 1.07998 * 119.56872 * 180.02562 * 21 20 18 38 38 H 1.09002 * 109.48561 * 299.35631 * 22 13 12 39 39 H 1.08995 * 109.49120 * 179.28791 * 22 13 12 40 40 H 1.08996 * 109.48912 * 303.15134 * 23 10 9 41 41 H 1.08996 * 109.48852 * 63.21654 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 2.9688 -3.6625 -1.2371 12 6 4.0044 -4.7868 -1.1598 13 7 3.3197 -6.0639 -0.9148 14 6 4.2743 -7.1804 -0.9092 15 6 4.8583 -7.3490 -2.2882 16 6 4.2485 -8.1899 -3.2101 17 6 4.8140 -8.3131 -4.4662 18 6 5.9739 -7.6023 -4.7586 19 7 6.5557 -7.7203 -6.0154 20 7 6.5281 -6.8143 -3.8504 21 6 6.0079 -6.6742 -2.6457 22 6 2.5567 -6.0170 0.3402 23 6 1.5211 -4.8927 0.2629 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6248 -2.5524 0.9029 26 1 0.6241 -2.5613 -0.8770 27 1 2.2896 -3.8503 -2.0687 28 1 3.4767 -2.7102 -1.3898 29 1 4.7000 -4.5851 -0.3452 30 1 4.5519 -4.8423 -2.1006 31 1 5.0742 -6.9709 -0.1991 32 1 3.7604 -8.0964 -0.6178 33 1 3.3507 -8.7325 -2.9533 34 1 4.3639 -8.9555 -5.2086 35 1 7.3641 -7.2265 -6.2240 36 1 6.1532 -8.2965 -6.6840 37 1 6.4874 -6.0221 -1.9307 38 1 3.2359 -5.8292 1.1718 39 1 2.0488 -6.9692 0.4929 40 1 0.9736 -4.8372 1.2037 41 1 0.8255 -5.0943 -0.5517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602022266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:46 Heat of formation + Delta-G solvation = 47.035225 kcal Electronic energy + Delta-G solvation = -21176.903088 eV Core-core repulsion = 18091.335760 eV Total energy + Delta-G solvation = -3085.567328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40040 -38.68393 -35.84121 -34.46285 -32.82451 -32.30742 -30.61138 -30.08755 -27.67506 -25.44993 -23.93683 -23.56616 -22.99204 -21.76176 -21.25993 -19.23593 -17.64966 -17.50201 -16.75804 -15.94181 -15.60519 -15.21747 -14.59806 -14.40703 -14.32187 -14.20418 -13.81454 -13.73522 -13.54035 -13.24862 -13.00802 -12.15603 -12.12856 -11.75754 -11.52878 -11.12281 -10.96810 -10.88092 -10.74787 -10.61491 -10.32023 -10.12195 -9.99100 -9.77298 -9.50948 -8.64391 -8.35133 -8.19615 -7.87725 -7.29296 -6.34215 -4.02782 1.18611 1.37148 3.34712 3.46622 3.49009 3.67449 3.73990 4.27948 4.52602 4.54629 4.76814 4.87260 4.89968 5.03675 5.17892 5.31657 5.35771 5.41552 5.53578 5.58136 5.69128 5.76603 5.81601 5.88576 5.93587 6.04179 6.15428 6.30418 6.37476 6.50370 6.54830 6.66381 7.00771 7.07749 7.10848 7.22206 7.24704 7.30650 7.83144 8.02542 8.11892 8.35483 8.61192 8.89957 9.68036 11.05028 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022645 B = 0.003774 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.202007 B = 7417.648697 C = 8178.497218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.532 5.532 11 C 0.070 3.930 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.106 3.894 15 C -0.183 4.183 16 C -0.013 4.013 17 C -0.241 4.241 18 C 0.397 3.603 19 N -0.856 5.856 20 N -0.545 5.545 21 C 0.156 3.844 22 C 0.062 3.938 23 C 0.055 3.945 24 H 0.266 0.734 25 H 0.019 0.981 26 H -0.020 1.020 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.406 0.594 37 H 0.152 0.848 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.520 -19.050 -7.400 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.257 5.257 11 C -0.059 4.059 12 C -0.071 4.071 13 N -0.261 5.261 14 C -0.023 4.023 15 C -0.188 4.188 16 C -0.040 4.040 17 C -0.266 4.266 18 C 0.160 3.840 19 N -0.400 5.400 20 N -0.262 5.262 21 C -0.002 4.002 22 C -0.066 4.066 23 C -0.074 4.074 24 H 0.077 0.923 25 H 0.037 0.963 26 H -0.002 1.002 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.231 0.769 36 H 0.235 0.765 37 H 0.169 0.831 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.047 -16.940 -7.572 21.595 hybrid contribution -0.519 -2.186 -0.209 2.256 sum 10.528 -19.126 -7.781 23.177 Atomic orbital electron populations 1.70796 1.06896 1.30376 1.47078 1.25849 0.96494 1.02703 0.93943 0.83498 0.74802 0.75138 0.76546 1.20850 1.21379 1.21470 1.21966 0.94759 0.90995 1.54900 0.92537 1.19798 0.90690 0.88967 0.94749 1.62203 1.27604 1.02425 1.33463 1.21975 0.95434 0.97624 0.90877 1.22288 0.96139 0.88438 1.00229 1.62206 1.25760 1.03367 1.34759 1.20799 0.94249 0.95122 0.92085 1.20429 0.98279 1.02014 0.98056 1.21164 0.97048 0.94231 0.91509 1.21303 0.99037 1.07059 0.99213 1.18364 0.89080 0.90006 0.86529 1.42175 1.32340 1.53871 1.11565 1.67174 1.34888 1.21242 1.02940 1.22309 0.91888 0.94534 0.91452 1.22141 0.96050 0.98425 0.89966 1.22089 0.94884 0.90125 1.00308 0.92341 0.96265 1.00198 0.95557 0.89533 0.94266 0.91013 0.94056 0.90294 0.85003 0.85464 0.76887 0.76470 0.83088 0.94193 0.91105 0.91106 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.65 55.43 0.76 -27.55 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.59 -16.96 8.47 -34.44 -0.29 -17.26 16 8 H 0.06 1.63 7.13 -52.49 -0.37 1.25 16 9 C 0.18 4.88 4.03 -4.98 -0.02 4.86 16 10 N -0.53 -11.90 4.70 -235.90 -1.11 -13.01 16 11 C 0.07 1.44 5.43 -3.76 -0.02 1.41 16 12 C 0.06 0.94 5.26 -3.76 -0.02 0.92 16 13 N -0.54 -7.94 4.70 -235.92 -1.11 -9.05 16 14 C 0.11 1.24 5.14 -4.98 -0.03 1.21 16 15 C -0.18 -2.17 4.90 -104.46 -0.51 -2.68 16 16 C -0.01 -0.14 9.85 -39.32 -0.39 -0.53 16 17 C -0.24 -2.48 9.94 -39.22 -0.39 -2.87 16 18 C 0.40 4.48 7.75 -155.02 -1.20 3.28 16 19 N -0.86 -6.67 9.07 31.13 0.28 -6.39 16 20 N -0.54 -7.14 10.39 -12.44 -0.13 -7.27 16 21 C 0.16 1.94 9.09 -17.57 -0.16 1.79 16 22 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 23 C 0.05 1.02 5.61 -3.77 -0.02 1.00 16 24 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 25 H 0.02 0.54 7.90 -51.92 -0.41 0.13 16 26 H -0.02 -0.55 7.98 -51.93 -0.41 -0.97 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.93 6.79 -51.93 -0.35 1.57 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.13 5.96 -51.93 -0.31 0.82 16 31 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.08 0.80 7.98 -51.93 -0.41 0.39 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.40 2.84 8.95 -40.82 -0.37 2.48 16 36 H 0.41 2.03 8.82 -40.82 -0.36 1.67 16 37 H 0.15 1.71 7.99 -52.49 -0.42 1.29 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -33.23 329.88 -10.89 -44.12 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.30 Total: 1.24 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.17 Total: -7.65 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -1.31 Total: -63.27 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -10.89 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602022266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.156 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds