Wall clock time and date at job start Mon Mar 30 2020 01:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46962 * 110.99654 * 293.79653 * 10 9 7 12 12 C 1.53050 * 109.36359 * 176.81137 * 11 10 9 13 13 N 1.46961 * 109.36177 * 58.39885 * 12 11 10 14 14 C 1.46899 * 110.99813 * 176.80963 * 13 12 11 15 15 C 1.50698 * 109.47218 * 293.80565 * 14 13 12 16 16 C 1.38887 * 120.33186 * 269.71967 * 15 14 13 17 17 C 1.38302 * 118.50673 * 179.78344 * 16 15 14 18 18 C 1.39149 * 119.09231 * 0.49039 * 17 16 15 19 19 N 1.38998 * 119.70367 * 179.77256 * 18 17 16 20 20 N 1.32394 * 120.58730 * 359.74896 * 18 17 16 21 21 C 1.31969 * 121.62518 * 0.02562 * 20 18 17 22 22 C 1.46954 * 110.88476 * 300.68100 * 13 12 11 23 23 C 1.46960 * 110.99909 * 169.99961 * 10 9 7 24 24 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 26 26 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 27 27 H 1.09002 * 109.48757 * 296.77631 * 11 10 9 28 28 H 1.09004 * 109.48878 * 56.84353 * 11 10 9 29 29 H 1.08998 * 109.48795 * 298.43294 * 12 11 10 30 30 H 1.08996 * 109.48853 * 178.36850 * 12 11 10 31 31 H 1.09001 * 109.47042 * 53.80024 * 14 13 12 32 32 H 1.08993 * 109.47252 * 173.80395 * 14 13 12 33 33 H 1.07995 * 120.74964 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.45691 * 180.21994 * 17 16 15 35 35 H 0.96997 * 120.00255 * 179.97438 * 19 18 17 36 36 H 0.97005 * 119.99850 * 359.97438 * 19 18 17 37 37 H 1.07998 * 119.56872 * 180.02562 * 21 20 18 38 38 H 1.09002 * 109.48561 * 299.35631 * 22 13 12 39 39 H 1.08995 * 109.49120 * 179.28791 * 22 13 12 40 40 H 1.08996 * 109.48912 * 303.15134 * 23 10 9 41 41 H 1.08996 * 109.48852 * 63.21654 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 2.9688 -3.6625 -1.2371 12 6 4.0044 -4.7868 -1.1598 13 7 3.3197 -6.0639 -0.9148 14 6 4.2743 -7.1804 -0.9092 15 6 4.8583 -7.3490 -2.2882 16 6 4.2485 -8.1899 -3.2101 17 6 4.8140 -8.3131 -4.4662 18 6 5.9739 -7.6023 -4.7586 19 7 6.5557 -7.7203 -6.0154 20 7 6.5281 -6.8143 -3.8504 21 6 6.0079 -6.6742 -2.6457 22 6 2.5567 -6.0170 0.3402 23 6 1.5211 -4.8927 0.2629 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6248 -2.5524 0.9029 26 1 0.6241 -2.5613 -0.8770 27 1 2.2896 -3.8503 -2.0687 28 1 3.4767 -2.7102 -1.3898 29 1 4.7000 -4.5851 -0.3452 30 1 4.5519 -4.8423 -2.1006 31 1 5.0742 -6.9709 -0.1991 32 1 3.7604 -8.0964 -0.6178 33 1 3.3507 -8.7325 -2.9533 34 1 4.3639 -8.9555 -5.2086 35 1 7.3641 -7.2265 -6.2240 36 1 6.1532 -8.2965 -6.6840 37 1 6.4874 -6.0221 -1.9307 38 1 3.2359 -5.8292 1.1718 39 1 2.0488 -6.9692 0.4929 40 1 0.9736 -4.8372 1.2037 41 1 0.8255 -5.0943 -0.5517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602022266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:45 Heat of formation + Delta-G solvation = 21.771518 kcal Electronic energy + Delta-G solvation = -21177.998604 eV Core-core repulsion = 18091.335760 eV Total energy + Delta-G solvation = -3086.662845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26879 -40.06472 -37.19570 -35.60750 -34.63152 -33.30652 -31.97841 -31.22877 -29.23822 -27.03267 -25.34888 -24.63927 -24.26041 -23.54126 -22.28697 -20.70340 -18.93878 -18.40461 -18.26115 -17.35815 -16.57566 -16.08581 -16.00415 -15.75591 -15.72836 -15.61872 -15.29090 -15.06801 -14.89363 -14.51117 -13.94970 -13.84551 -13.49758 -13.25858 -13.10860 -12.70764 -12.49920 -12.41596 -12.25393 -11.94792 -11.92104 -11.63669 -11.51253 -10.78203 -10.64750 -10.58911 -10.36353 -9.35954 -9.14942 -8.70113 -8.67299 -6.40630 0.35388 0.54450 1.52750 1.61520 1.81154 2.55169 2.67190 2.79993 3.10490 3.17988 3.23032 3.73970 3.88056 3.95016 4.09375 4.14621 4.20495 4.26548 4.35958 4.37876 4.46859 4.58531 4.66792 4.75882 4.77328 4.82937 4.88669 4.93594 4.94715 5.04369 5.11461 5.13585 5.49345 5.72666 5.74300 5.92544 6.02644 6.14128 6.35294 6.39636 6.42722 6.57444 6.62034 7.37730 7.40135 8.68848 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022645 B = 0.003774 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.202007 B = 7417.648697 C = 8178.497218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.600 4.600 8 H 0.054 0.946 9 C 0.195 3.805 10 N -0.539 5.539 11 C 0.072 3.928 12 C 0.074 3.926 13 N -0.543 5.543 14 C 0.111 3.889 15 C -0.194 4.194 16 C -0.018 4.018 17 C -0.243 4.243 18 C 0.384 3.616 19 N -0.844 5.844 20 N -0.573 5.573 21 C 0.141 3.859 22 C 0.072 3.928 23 C 0.051 3.949 24 H 0.253 0.747 25 H 0.001 0.999 26 H -0.048 1.048 27 H 0.009 0.991 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.406 0.594 36 H 0.419 0.581 37 H 0.154 0.846 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -20.617 -7.712 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.942 3.058 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.638 4.638 8 H 0.073 0.927 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.056 4.056 12 C -0.054 4.054 13 N -0.268 5.268 14 C -0.016 4.016 15 C -0.199 4.199 16 C -0.044 4.044 17 C -0.268 4.268 18 C 0.145 3.855 19 N -0.389 5.389 20 N -0.292 5.292 21 C -0.016 4.016 22 C -0.056 4.056 23 C -0.077 4.077 24 H 0.062 0.938 25 H 0.019 0.981 26 H -0.030 1.030 27 H 0.027 0.973 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.235 0.765 36 H 0.251 0.749 37 H 0.171 0.829 38 H 0.060 0.940 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 12.323 -18.567 -7.906 23.645 hybrid contribution -0.918 -1.797 -0.187 2.027 sum 11.405 -20.364 -8.094 24.704 Atomic orbital electron populations 1.70929 1.07937 1.29594 1.49033 1.27454 0.96523 1.06745 0.92729 0.82884 0.74048 0.70835 0.78035 1.20763 1.19353 1.19487 1.22278 0.94831 0.92203 1.54470 0.92740 1.19506 0.90750 0.90427 0.92472 1.62155 1.26865 1.03034 1.34287 1.21932 0.95688 0.98484 0.89515 1.22029 0.94527 0.88034 1.00832 1.62174 1.26693 1.03238 1.34744 1.20846 0.93954 0.94466 0.92350 1.20463 0.98360 1.02649 0.98415 1.21465 0.97510 0.93942 0.91508 1.21614 0.98557 1.06888 0.99708 1.18721 0.89642 0.89894 0.87198 1.42183 1.32216 1.53670 1.10804 1.67161 1.35938 1.22494 1.03604 1.22439 0.92505 0.95049 0.91612 1.22092 0.95231 0.98211 0.90076 1.22231 0.95997 0.89529 0.99957 0.93814 0.98089 1.03027 0.97291 0.91906 0.94163 0.90122 0.93321 0.87944 0.83131 0.82901 0.76484 0.74869 0.82905 0.94017 0.87560 0.90876 0.96172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 3 Si 1.12 51.44 29.90 68.60 2.05 53.49 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.60 -35.43 8.47 25.60 0.22 -35.21 16 8 H 0.05 3.18 7.13 -2.91 -0.02 3.16 16 9 C 0.20 10.81 4.03 85.56 0.34 11.15 16 10 N -0.54 -24.54 4.70 -900.25 -4.23 -28.77 16 11 C 0.07 3.05 5.43 86.31 0.47 3.52 16 12 C 0.07 2.38 5.26 86.31 0.45 2.84 16 13 N -0.54 -14.92 4.70 -900.31 -4.23 -19.16 16 14 C 0.11 2.27 5.14 85.56 0.44 2.71 16 15 C -0.19 -4.17 4.90 -19.76 -0.10 -4.27 16 16 C -0.02 -0.35 9.85 22.44 0.22 -0.12 16 17 C -0.24 -4.39 9.94 22.50 0.22 -4.16 16 18 C 0.38 8.01 7.75 133.07 1.03 9.04 16 19 N -0.84 -11.63 9.07 -55.43 -0.50 -12.13 16 20 N -0.57 -14.46 10.39 -193.26 -2.01 -16.47 16 21 C 0.14 3.36 9.09 84.62 0.77 4.13 16 22 C 0.07 1.97 5.61 86.31 0.48 2.46 16 23 C 0.05 1.89 5.61 86.31 0.48 2.37 16 24 H 0.25 16.26 7.22 -92.70 -0.67 15.59 16 25 H 0.00 0.06 7.90 -2.38 -0.02 0.05 16 26 H -0.05 -2.86 7.98 -2.39 -0.02 -2.88 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 2.89 6.79 -2.39 -0.02 2.87 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 2.47 5.96 -2.39 -0.01 2.45 16 31 H 0.05 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.10 1.65 7.98 -2.39 -0.02 1.63 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.41 5.15 8.95 -92.71 -0.83 4.32 16 36 H 0.42 3.26 8.82 -92.70 -0.82 2.44 16 37 H 0.15 3.36 7.99 -2.91 -0.02 3.33 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 2.24 8.07 -2.39 -0.02 2.22 16 40 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.16 329.88 -3.64 -76.80 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -0.51 Total: 12.61 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.50 Total: -7.32 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -10.68 Total: -135.59 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -73.16 -3.64 -76.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602022266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.576 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds