Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00162 * 2 1 4 4 H 1.48494 * 109.46921 * 274.30431 * 3 2 1 5 5 H 1.48504 * 109.46900 * 34.30819 * 3 2 1 6 6 H 1.48503 * 109.47152 * 154.30423 * 3 2 1 7 7 C 1.37876 * 120.00097 * 180.27448 * 2 1 3 8 8 H 1.08001 * 119.99438 * 354.38362 * 7 2 1 9 9 C 1.50704 * 120.00390 * 174.39205 * 7 2 1 10 10 C 1.53002 * 115.54672 * 296.98335 * 9 7 2 11 11 N 1.46907 * 109.47115 * 305.34339 * 10 9 7 12 12 C 1.46952 * 110.99507 * 287.99799 * 11 10 9 13 13 C 1.53050 * 109.36495 * 176.81347 * 12 11 10 14 14 N 1.46960 * 109.36525 * 58.40006 * 13 12 11 15 15 C 1.38497 * 111.00448 * 176.81401 * 14 13 12 16 16 N 1.31195 * 125.78967 * 123.81840 * 15 14 13 17 17 C 1.34394 * 109.30269 * 179.97438 * 16 15 14 18 18 C 1.34382 * 108.31633 * 0.02562 * 17 16 15 19 19 N 1.36021 * 125.78754 * 303.52228 * 15 14 13 20 20 H 0.97006 * 126.49859 * 0.02562 * 19 15 14 21 21 C 1.46956 * 110.87830 * 300.68369 * 14 13 12 22 22 C 1.46955 * 110.99881 * 164.19980 * 11 10 9 23 23 C 1.52992 * 117.49934 * 151.31632 * 9 7 2 24 24 C 1.52990 * 117.49933 * 82.65350 * 9 7 2 25 25 H 0.97008 * 119.99607 * 359.72554 * 1 2 3 26 26 H 1.09004 * 109.46975 * 65.33589 * 10 9 7 27 27 H 1.08995 * 109.46969 * 185.34220 * 10 9 7 28 28 H 1.09001 * 109.49139 * 296.77902 * 12 11 10 29 29 H 1.09005 * 109.49143 * 56.84987 * 12 11 10 30 30 H 1.09000 * 109.49045 * 298.43695 * 13 12 11 31 31 H 1.08996 * 109.49554 * 178.36815 * 13 12 11 32 32 H 1.07998 * 125.84013 * 179.97438 * 17 16 15 33 33 H 1.07995 * 126.52363 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.49014 * 299.35127 * 21 14 13 35 35 H 1.09003 * 109.50680 * 179.29691 * 21 14 13 36 36 H 1.08996 * 109.48801 * 303.15562 * 22 11 10 37 37 H 1.09009 * 109.48689 * 63.19674 * 22 11 10 38 38 H 1.09002 * 117.50498 * 359.97438 * 23 9 7 39 39 H 1.08998 * 117.49907 * 145.01787 * 23 9 7 40 40 H 1.09009 * 117.49995 * 214.97976 * 24 9 7 41 41 H 1.08998 * 117.50308 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4057 2.0989 -1.3961 5 1 1.4951 2.6247 0.7892 6 1 3.5893 1.4156 0.6071 7 6 2.0045 -1.1940 -0.0057 8 1 1.4683 -2.1275 0.0814 9 6 3.5062 -1.1966 -0.1333 10 6 4.0582 -0.6262 -1.4413 11 7 3.4469 -1.3278 -2.5780 12 6 3.9675 -2.6972 -2.6932 13 6 3.2499 -3.4184 -3.8367 14 7 3.4541 -2.6735 -5.0869 15 6 2.8779 -3.3349 -6.1586 16 7 1.9852 -2.8340 -6.9793 17 6 1.6549 -3.7601 -7.8955 18 6 2.3607 -4.8753 -7.6422 19 7 3.1457 -4.6121 -6.5423 20 1 3.7697 -5.2228 -6.1195 21 6 2.9336 -1.3041 -4.9716 22 6 3.6512 -0.5829 -3.8282 23 6 4.2676 -2.3585 0.5078 24 6 4.3236 -0.9651 1.1391 25 1 -0.4850 0.8401 0.0040 26 1 3.8239 0.4366 -1.5017 27 1 5.1393 -0.7622 -1.4692 28 1 5.0373 -2.6635 -2.8992 29 1 3.7932 -3.2323 -1.7597 30 1 2.1837 -3.4762 -3.6179 31 1 3.6547 -4.4248 -3.9428 32 1 0.9434 -3.6306 -8.6976 33 1 2.3231 -5.8001 -8.1987 34 1 1.8638 -1.3378 -4.7657 35 1 3.1075 -0.7688 -5.9051 36 1 3.2464 0.4235 -3.7221 37 1 4.7175 -0.5248 -4.0468 38 1 3.6826 -3.1209 1.0222 39 1 5.1621 -2.7163 -0.0020 40 1 5.2550 -0.4068 1.0443 41 1 3.7754 -0.8105 2.0684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602817968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = 96.151163 kcal Electronic energy + Delta-G solvation = -22096.783204 eV Core-core repulsion = 19013.345703 eV Total energy + Delta-G solvation = -3083.437501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.93002 -40.36636 -38.51289 -35.72747 -34.11232 -33.55868 -31.87822 -30.45405 -28.49980 -27.38194 -25.04101 -24.86301 -23.06465 -22.33172 -21.87231 -20.78758 -20.59589 -19.54159 -18.22671 -16.97647 -16.84234 -16.45007 -16.01364 -15.91488 -15.79439 -15.42191 -15.06148 -14.80948 -14.70613 -14.43726 -14.36533 -13.80638 -13.57462 -13.04478 -12.89742 -12.46326 -12.33354 -12.31751 -12.15841 -11.90086 -11.76921 -11.32946 -11.09067 -10.98946 -10.84018 -10.67235 -10.45115 -10.18628 -8.98438 -8.81205 -8.15201 -6.14220 1.06951 1.37092 1.42518 1.53814 1.81267 2.14864 2.46548 2.88605 2.97642 3.21438 3.46135 3.70288 3.93997 3.98215 4.18221 4.21407 4.29400 4.38366 4.39183 4.44211 4.50511 4.52869 4.61540 4.67392 4.77001 4.80566 4.86617 4.94413 4.95866 5.02050 5.10020 5.15513 5.41281 5.46411 5.51930 5.56970 5.82334 5.98928 6.29393 6.32863 6.46995 6.67129 6.87948 7.15150 7.50478 9.01896 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.005101 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.982089 B = 5487.423058 C = 5899.158896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.023 3.977 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.224 1.224 7 C -0.443 4.443 8 H 0.022 0.978 9 C -0.019 4.019 10 C 0.101 3.899 11 N -0.541 5.541 12 C 0.069 3.931 13 C 0.067 3.933 14 N -0.452 5.452 15 C 0.371 3.629 16 N -0.557 5.557 17 C -0.051 4.051 18 C -0.036 4.036 19 N -0.564 5.564 20 H 0.433 0.567 21 C 0.093 3.907 22 C 0.059 3.941 23 C -0.165 4.165 24 C -0.190 4.190 25 H 0.258 0.742 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.107 0.893 32 H 0.185 0.815 33 H 0.222 0.778 34 H 0.028 0.972 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.504 -9.195 -12.708 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.146 1.146 7 C -0.481 4.481 8 H 0.041 0.959 9 C -0.020 4.020 10 C -0.026 4.026 11 N -0.266 5.266 12 C -0.059 4.059 13 C -0.060 4.060 14 N -0.175 5.175 15 C 0.017 3.983 16 N -0.283 5.283 17 C -0.197 4.197 18 C -0.169 4.169 19 N -0.174 5.174 20 H 0.273 0.727 21 C -0.034 4.034 22 C -0.069 4.069 23 C -0.202 4.202 24 C -0.229 4.229 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.125 0.875 32 H 0.202 0.798 33 H 0.239 0.761 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.028 -8.288 -12.679 19.342 hybrid contribution 0.005 -0.034 0.306 0.308 sum 12.032 -8.322 -12.373 19.160 Atomic orbital electron populations 1.70073 1.08417 1.27266 1.54178 1.25594 0.94866 1.02392 0.94429 0.86088 0.81116 0.79414 0.78010 1.20386 1.23398 1.14602 1.20195 0.89342 0.91898 1.46637 0.95940 1.19297 0.92078 1.00615 0.90033 1.21639 0.94654 0.96330 0.89991 1.61787 1.59625 1.02646 1.02552 1.22104 0.96628 0.89391 0.97753 1.22313 0.99304 0.97523 0.86890 1.59083 1.53371 1.03471 1.01550 1.21249 0.95525 0.84399 0.97170 1.70622 1.14487 1.33935 1.09231 1.22666 1.04899 0.90568 1.01570 1.23282 0.97851 1.02883 0.92904 1.43229 1.36043 1.12086 1.26026 0.72667 1.21821 0.96804 0.86100 0.98704 1.22188 0.99108 0.97054 0.88594 1.22849 1.01716 0.91077 1.04542 1.23083 1.01674 0.99933 0.98175 0.93306 0.93409 0.93745 0.92864 0.89616 0.95544 0.87521 0.79764 0.76139 0.95312 0.89038 0.91062 0.92736 0.90833 0.87861 0.88730 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.02 1.34 5.47 84.65 0.46 1.80 16 3 Si 0.93 44.67 24.79 68.60 1.70 46.37 16 4 H -0.28 -13.08 7.07 99.48 0.70 -12.37 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.22 -9.51 5.88 99.48 0.59 -8.93 16 7 C -0.44 -24.76 9.09 25.60 0.23 -24.53 16 8 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 9 C -0.02 -0.82 0.60 -52.93 -0.03 -0.85 16 10 C 0.10 3.91 4.44 86.30 0.38 4.30 16 11 N -0.54 -20.56 4.35 -895.69 -3.90 -24.46 16 12 C 0.07 2.14 5.36 86.31 0.46 2.61 16 13 C 0.07 1.93 5.53 86.31 0.48 2.41 16 14 N -0.45 -13.27 4.77 -706.07 -3.37 -16.64 16 15 C 0.37 10.65 7.36 260.37 1.92 12.57 16 16 N -0.56 -17.90 10.28 -197.94 -2.04 -19.93 16 17 C -0.05 -1.22 11.84 83.42 0.99 -0.23 16 18 C -0.04 -0.63 12.04 82.90 1.00 0.37 16 19 N -0.56 -11.18 6.04 -195.54 -1.18 -12.36 16 20 H 0.43 5.69 8.71 -92.70 -0.81 4.88 16 21 C 0.09 3.13 4.96 86.31 0.43 3.56 16 22 C 0.06 1.97 5.58 86.31 0.48 2.45 16 23 C -0.16 -5.92 8.37 30.62 0.26 -5.66 16 24 C -0.19 -7.26 8.34 30.61 0.26 -7.01 16 25 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 26 H 0.05 1.97 4.60 -2.39 -0.01 1.96 16 27 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 2.81 6.11 -2.38 -0.01 2.80 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 2.25 7.73 -2.39 -0.02 2.24 16 32 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 2.91 8.00 -2.39 -0.02 2.90 16 36 H 0.07 2.51 8.02 -2.39 -0.02 2.49 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.10 3.01 8.06 -2.39 -0.02 2.99 16 40 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -74.03 321.97 -1.08 -75.11 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.09 Total: 21.29 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 7.31 Total: -8.22 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -10.19 Total: -134.55 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.70 Total: 46.37 kcal Total: -74.03 -1.08 -75.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.262 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds