Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30840 * 125.95926 * 2 1 4 4 C 1.33242 * 109.82674 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.52654 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.86864 * 2.37941 * 5 4 3 7 7 C 1.55135 * 110.98498 * 238.54170 * 5 4 3 8 8 C 1.54319 * 103.01742 * 206.21240 * 7 5 4 9 9 N 1.47445 * 107.23246 * 22.28622 * 8 7 5 10 10 C 1.46897 * 111.00358 * 123.25661 * 9 8 7 11 11 C 1.52994 * 109.47221 * 75.41474 * 10 9 8 12 12 C 1.50704 * 115.55130 * 36.91898 * 11 10 9 13 13 H 1.07993 * 119.99881 * 264.68777 * 12 11 10 14 14 C 1.37882 * 119.99732 * 84.68189 * 12 11 10 15 15 N 1.31515 * 120.00174 * 351.25564 * 14 12 11 16 16 Si 1.86801 * 119.99713 * 171.24633 * 14 12 11 17 17 H 1.48504 * 109.47007 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46785 * 120.00359 * 16 14 12 19 19 H 1.48497 * 109.47096 * 240.00467 * 16 14 12 20 20 C 1.53002 * 117.50281 * 251.21088 * 11 10 9 21 21 C 1.53002 * 60.00173 * 252.51015 * 20 11 10 22 22 C 1.47847 * 108.56657 * 0.98516 * 9 8 7 23 23 N 1.30713 * 108.94605 * 0.25393 * 4 3 2 24 24 N 1.34431 * 125.96362 * 180.02562 * 2 1 3 25 25 H 0.96998 * 126.81724 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47089 * 90.00574 * 1 2 3 27 27 H 1.08991 * 109.47187 * 210.00361 * 1 2 3 28 28 H 1.09005 * 109.47247 * 330.00391 * 1 2 3 29 29 H 1.09000 * 110.70779 * 87.83276 * 7 5 4 30 30 H 1.09001 * 110.71316 * 324.59384 * 7 5 4 31 31 H 1.08996 * 109.89405 * 262.88470 * 8 7 5 32 32 H 1.09002 * 109.88993 * 141.68637 * 8 7 5 33 33 H 1.09001 * 109.47175 * 315.41727 * 10 9 8 34 34 H 1.08999 * 109.47162 * 195.41569 * 10 9 8 35 35 H 0.96997 * 119.99954 * 185.01596 * 15 14 12 36 36 H 1.09007 * 117.49310 * 0.02562 * 20 11 10 37 37 H 1.08997 * 117.49863 * 145.01586 * 20 11 10 38 38 H 1.09002 * 117.49788 * 252.50961 * 21 20 11 39 39 H 1.09002 * 117.49846 * 107.48755 * 21 20 11 40 40 H 1.09011 * 110.37281 * 94.73316 * 22 9 8 41 41 H 1.08994 * 110.37933 * 217.07223 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6237 -0.0002 6 1 4.4106 2.6627 0.0429 7 6 5.6417 1.3763 -1.2361 8 6 7.0273 1.8551 -0.7543 9 7 7.0186 1.8054 0.7193 10 6 8.1087 0.9601 1.2241 11 6 9.4357 1.7116 1.1009 12 6 9.3711 3.1931 1.3696 13 1 9.2609 3.8863 0.5489 14 6 9.4525 3.6633 2.6632 15 7 9.4133 2.8213 3.6726 16 14 9.6189 5.4964 2.9818 17 1 9.6389 6.2240 1.6873 18 1 8.4673 5.9640 3.7943 19 1 10.8823 5.7584 3.7169 20 6 10.4254 1.2283 0.0389 21 6 10.7079 0.9724 1.5207 22 6 5.7039 1.2971 1.1653 23 7 3.6194 -0.6167 -0.0064 24 7 2.2965 -1.0881 -0.0005 25 1 2.0093 -2.0146 -0.0006 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 5.3033 1.9689 -2.0861 30 1 5.6668 0.3165 -1.4895 31 1 7.2040 2.8770 -1.0897 32 1 7.8033 1.1955 -1.1429 33 1 8.1562 0.0410 0.6400 34 1 7.9249 0.7165 2.2705 35 1 9.3971 3.1559 4.5829 36 1 10.1309 0.3751 -0.5723 37 1 11.0298 1.9820 -0.4658 38 1 11.4982 1.5577 1.9908 39 1 10.5994 -0.0494 1.8846 40 1 5.7493 0.2205 1.3302 41 1 5.3880 1.8080 2.0748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602844985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 96.930352 kcal Electronic energy + Delta-G solvation = -21488.772483 eV Core-core repulsion = 18405.368770 eV Total energy + Delta-G solvation = -3083.403713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.20426 -40.06542 -37.92210 -34.50184 -33.79734 -33.36962 -32.11950 -30.00844 -28.70809 -27.58319 -26.54606 -23.95298 -22.85158 -21.97169 -21.91703 -21.03225 -20.44751 -18.99490 -17.85266 -16.81248 -16.68287 -16.54119 -16.34618 -15.57228 -15.26006 -14.75187 -14.52288 -14.32097 -13.96292 -13.78476 -13.75292 -13.53172 -13.05563 -12.85941 -12.82013 -12.67243 -12.54038 -12.40977 -12.23916 -12.21859 -11.89835 -11.59142 -11.27734 -11.08617 -11.04543 -10.67759 -10.45074 -10.27836 -9.81965 -8.85242 -7.92212 -5.95339 0.55985 1.45690 1.48737 1.58482 1.71314 1.76981 2.55338 2.83830 3.32762 3.38926 3.53826 3.57725 3.76135 3.85199 3.93348 4.21266 4.35311 4.44005 4.48247 4.53166 4.71295 4.74174 4.75875 4.79074 4.80400 4.87254 5.00346 5.04377 5.05993 5.10416 5.15161 5.24806 5.28620 5.33934 5.37448 5.66250 5.72138 5.96356 6.21989 6.38256 6.40964 6.67497 7.04821 7.07824 7.67375 9.17324 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.004314 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.440495 B = 6488.711271 C = 7016.532545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.573 5.573 4 C 0.238 3.762 5 C 0.000 4.000 6 H 0.108 0.892 7 C -0.113 4.113 8 C 0.056 3.944 9 N -0.512 5.512 10 C 0.117 3.883 11 C 0.030 3.970 12 C -0.458 4.458 13 H 0.048 0.952 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.939 3.061 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.189 4.189 21 C -0.170 4.170 22 C 0.065 3.935 23 N -0.340 5.340 24 N -0.476 5.476 25 H 0.455 0.545 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.013 0.987 34 H 0.038 0.962 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -8.344 -9.342 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.303 5.303 4 C -0.045 4.045 5 C -0.022 4.022 6 H 0.126 0.874 7 C -0.153 4.153 8 C -0.072 4.072 9 N -0.235 5.235 10 C -0.011 4.011 11 C 0.030 3.970 12 C -0.496 4.496 13 H 0.066 0.934 14 C -0.172 4.172 15 N -0.555 5.555 16 Si 0.767 3.233 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.226 4.226 21 C -0.208 4.208 22 C -0.065 4.065 23 N -0.170 5.170 24 N -0.196 5.196 25 H 0.304 0.696 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.268 -7.891 -8.954 20.991 hybrid contribution 0.025 -0.535 0.528 0.752 sum -17.243 -8.426 -8.426 20.960 Atomic orbital electron populations 1.20657 0.79775 1.06559 1.06185 1.25336 0.98356 0.81932 0.93484 1.70361 1.01461 1.31443 1.27082 1.23906 0.93164 0.90047 0.97411 1.20551 0.88188 0.97001 0.96467 0.87397 1.22771 0.93914 1.01724 0.96879 1.22731 0.95812 1.01287 0.87366 1.63323 1.00881 1.50394 1.08886 1.21514 0.91781 0.90931 0.96890 1.18959 0.86628 0.94124 0.97330 1.20356 1.47505 0.90046 0.91694 0.93386 1.25463 0.95322 1.00097 0.96329 1.70097 1.52319 1.34732 0.98339 0.85798 0.76899 0.82670 0.77948 1.19274 1.21487 1.21436 1.23057 1.06275 1.02191 0.91126 1.22440 1.02728 0.99067 0.96586 1.22882 0.88987 0.97406 0.97180 1.77919 0.98649 1.12474 1.27925 1.47924 1.03214 1.11025 1.57455 0.69603 0.87031 0.86865 0.88205 0.88703 0.91474 0.91003 0.92988 0.96856 0.94352 0.93895 0.89637 0.90402 0.92347 0.91334 0.94599 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.29 5.58 8.24 138.22 1.14 6.72 16 3 N -0.57 -16.28 11.19 -179.71 -2.01 -18.29 16 4 C 0.24 7.41 6.83 138.63 0.95 8.36 16 5 C 0.00 -0.01 3.57 -10.16 -0.04 -0.05 16 6 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 7 C -0.11 -3.38 6.40 31.77 0.20 -3.18 16 8 C 0.06 2.00 6.53 86.65 0.57 2.57 16 9 N -0.51 -21.93 4.37 -885.56 -3.87 -25.80 16 10 C 0.12 5.46 4.69 86.30 0.40 5.87 16 11 C 0.03 1.50 1.35 -52.93 -0.07 1.43 16 12 C -0.46 -25.21 8.08 25.60 0.21 -25.01 16 13 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 14 C 0.03 1.47 5.38 84.66 0.46 1.93 16 15 N -0.91 -54.04 13.02 21.45 0.28 -53.77 16 16 Si 0.94 45.37 29.55 68.60 2.03 47.39 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 20 C -0.19 -8.15 9.78 30.60 0.30 -7.85 16 21 C -0.17 -8.18 9.55 30.60 0.29 -7.89 16 22 C 0.06 2.49 6.10 86.77 0.53 3.02 16 23 N -0.34 -10.07 12.44 -51.33 -0.64 -10.71 16 24 N -0.48 -9.40 7.45 -50.70 -0.38 -9.78 16 25 H 0.46 5.05 8.96 -213.10 -1.91 3.14 16 26 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.01 7.94 -2.39 -0.02 1.99 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.05 1.86 7.26 -2.39 -0.02 1.85 16 33 H 0.01 0.58 7.56 -2.39 -0.02 0.56 16 34 H 0.04 1.99 7.99 -2.39 -0.02 1.97 16 35 H 0.25 14.41 8.32 -92.71 -0.77 13.63 16 36 H 0.09 3.24 8.06 -2.38 -0.02 3.22 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.04 1.41 7.50 -2.38 -0.02 1.39 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -71.06 339.17 0.20 -70.86 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.89 Total: 13.96 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 5.68 Total: -13.87 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.62 Total: -118.34 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.06 0.20 -70.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.790 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds