Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99716 * 2 1 4 4 H 1.48493 * 109.47257 * 269.99859 * 3 2 1 5 5 H 1.48503 * 109.47123 * 30.00441 * 3 2 1 6 6 H 1.48505 * 109.46646 * 150.00079 * 3 2 1 7 7 C 1.37875 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99820 * 156.33919 * 7 2 1 9 9 C 1.50702 * 119.99843 * 336.33557 * 7 2 1 10 10 C 1.52999 * 115.54964 * 323.08643 * 9 7 2 11 11 N 1.46893 * 109.47199 * 291.88404 * 10 9 7 12 12 C 1.46850 * 111.00319 * 76.71515 * 11 10 9 13 13 C 1.53033 * 109.52487 * 185.84073 * 12 11 10 14 14 C 1.53128 * 109.27620 * 300.81843 * 13 12 11 15 15 C 1.53113 * 109.16014 * 57.65761 * 14 13 12 16 16 H 1.09002 * 109.50312 * 62.32354 * 15 14 13 17 17 N 1.46497 * 109.50373 * 182.40393 * 15 14 13 18 18 C 1.35305 * 125.86804 * 34.92167 * 17 15 14 19 19 C 1.35353 * 106.17734 * 180.02562 * 18 17 15 20 20 N 1.33773 * 106.49395 * 0.02562 * 19 18 17 21 21 N 1.28628 * 108.88846 * 0.02562 * 20 19 18 22 22 C 1.46850 * 110.99750 * 200.96540 * 11 10 9 23 23 C 1.53001 * 117.49532 * 108.75966 * 9 7 2 24 24 C 1.53003 * 117.49490 * 177.41655 * 9 7 2 25 25 H 0.96999 * 119.99932 * 6.14389 * 1 2 3 26 26 H 1.09005 * 109.46608 * 171.88534 * 10 9 7 27 27 H 1.08999 * 109.46965 * 51.88453 * 10 9 7 28 28 H 1.08997 * 109.45617 * 65.82136 * 12 11 10 29 29 H 1.09003 * 109.45962 * 305.85514 * 12 11 10 30 30 H 1.08996 * 109.50223 * 180.88251 * 13 12 11 31 31 H 1.09000 * 109.53776 * 60.77864 * 13 12 11 32 32 H 1.09001 * 109.52200 * 297.74828 * 14 13 12 33 33 H 1.08999 * 109.57264 * 177.59512 * 14 13 12 34 34 H 1.08007 * 126.91436 * 359.75504 * 18 17 15 35 35 H 1.08004 * 126.75532 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.49613 * 54.16106 * 22 11 10 37 37 H 1.08996 * 109.43150 * 294.19717 * 22 11 10 38 38 H 1.08997 * 117.49365 * 214.99618 * 23 9 7 39 39 H 1.08994 * 117.50292 * 0.02562 * 23 9 7 40 40 H 1.08997 * 117.50178 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.49477 * 144.97152 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0164 -1.2331 -0.3759 9 6 1.3460 -2.4445 0.5228 10 6 0.4303 -2.2510 1.7331 11 7 1.2370 -1.8795 2.9031 12 6 1.6466 -0.4709 2.8342 13 6 2.6016 -0.1589 3.9885 14 6 1.8964 -0.4403 5.3182 15 6 1.4373 -1.9008 5.3444 16 1 2.3061 -2.5564 5.2849 17 7 0.7111 -2.1630 6.5894 18 6 -0.0915 -1.2881 7.2383 19 6 -0.5524 -1.9389 8.3320 20 7 -0.0157 -3.1638 8.2993 21 7 0.7285 -3.2646 7.2551 22 6 0.5163 -2.1632 4.1507 23 6 0.9528 -3.5154 -0.4968 24 6 2.1409 -3.7492 0.4396 25 1 -0.4850 0.8352 -0.0899 26 1 -0.1014 -3.1802 1.9385 27 1 -0.2890 -1.4599 1.5216 28 1 0.7661 0.1673 2.9086 29 1 2.1505 -0.2853 1.8856 30 1 2.8931 0.8905 3.9461 31 1 3.4890 -0.7867 3.9072 32 1 1.0313 0.2154 5.4176 33 1 2.5863 -0.2605 6.1427 34 1 -0.3156 -0.2730 6.9452 35 1 -1.2212 -1.5462 9.0837 36 1 0.1997 -3.2062 4.1588 37 1 -0.3592 -1.5176 4.2187 38 1 0.0417 -4.0821 -0.3052 39 1 1.1707 -3.3157 -1.5459 40 1 3.1399 -3.7032 0.0060 41 1 2.0117 -4.4695 1.2474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602845627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 122.165618 kcal Electronic energy + Delta-G solvation = -22368.935653 eV Core-core repulsion = 19286.626223 eV Total energy + Delta-G solvation = -3082.309430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 6.41 seconds Orbital eigenvalues (eV) -44.24159 -40.29855 -38.16714 -35.47748 -34.28922 -33.44243 -31.96020 -30.81741 -27.92156 -27.45010 -25.03995 -24.18079 -23.43425 -22.83041 -22.37180 -20.92185 -20.62162 -18.72653 -17.90886 -17.27302 -16.78672 -16.42289 -16.04861 -15.79566 -15.73070 -15.14568 -14.99072 -14.71710 -14.38834 -14.23869 -13.83079 -13.46849 -13.03793 -12.92541 -12.75949 -12.63785 -12.47832 -12.21205 -12.06132 -12.00984 -11.78244 -11.68027 -11.54618 -11.27591 -10.89984 -10.86750 -10.46632 -10.33716 -9.94490 -9.05039 -8.11634 -6.04806 0.65520 1.33083 1.37818 1.45362 1.53139 1.63311 2.40170 2.90358 3.12594 3.31603 3.60368 3.66674 3.79788 3.87802 4.11276 4.16094 4.17702 4.30186 4.37945 4.43821 4.54081 4.56193 4.58781 4.71998 4.78031 4.90238 4.92203 4.96394 5.02757 5.03864 5.16545 5.27033 5.29015 5.42506 5.53578 5.55550 5.62605 5.64982 5.91079 6.32582 6.41986 6.51258 6.86713 7.43279 7.53250 8.88964 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.005693 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.024064 B = 4916.817176 C = 5646.337758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.506 4.506 8 H 0.050 0.950 9 C 0.039 3.961 10 C 0.101 3.899 11 N -0.517 5.517 12 C 0.032 3.968 13 C -0.111 4.111 14 C -0.115 4.115 15 C 0.155 3.845 16 H 0.116 0.884 17 N -0.280 5.280 18 C -0.040 4.040 19 C -0.059 4.059 20 N -0.311 5.311 21 N -0.126 5.126 22 C 0.055 3.945 23 C -0.208 4.208 24 C -0.179 4.179 25 H 0.263 0.737 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.008 0.992 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.220 0.780 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 3.433 11.827 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.039 3.961 10 C -0.027 4.027 11 N -0.241 5.241 12 C -0.096 4.096 13 C -0.149 4.149 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.134 0.866 17 N -0.073 5.073 18 C -0.192 4.192 19 C -0.217 4.217 20 N -0.176 5.176 21 N -0.104 5.104 22 C -0.074 4.074 23 C -0.246 4.246 24 C -0.216 4.216 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.602 1.804 11.979 12.219 hybrid contribution -1.038 2.125 -0.754 2.482 sum 0.564 3.929 11.225 11.906 Atomic orbital electron populations 1.70066 1.07200 1.27554 1.47733 1.25350 0.94894 1.00856 0.93576 0.86376 0.80648 0.81138 0.78444 1.21198 1.20048 1.17652 1.20510 0.99331 0.92091 1.42299 0.93166 1.18926 0.96403 0.88087 0.92727 1.21457 0.94346 0.98410 0.88440 1.61695 1.41130 1.21299 1.00023 1.22754 0.97612 0.86819 1.02373 1.21603 0.98672 1.02582 0.92041 1.21943 1.02089 0.91712 0.99609 1.21701 0.94516 1.00736 0.77696 0.86583 1.47767 1.31272 1.09286 1.19004 1.24253 0.98263 1.00715 0.95931 1.24230 1.05333 0.90899 1.01233 1.75041 1.09382 1.20287 1.12851 1.78305 1.20454 1.08597 1.03049 1.22250 0.94401 1.00754 0.90029 1.22954 0.97781 1.07572 0.96336 1.22719 0.94820 1.02476 1.01633 0.92713 0.94476 0.92549 0.97405 0.87315 0.89409 0.90540 0.89830 0.88732 0.76349 0.76179 0.91623 0.95176 0.91164 0.91533 0.90899 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.59 11.33 21.45 0.24 -45.34 16 2 C 0.06 2.71 3.32 84.65 0.28 2.99 16 3 Si 0.91 37.95 28.05 68.60 1.92 39.87 16 4 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.51 -25.33 7.23 25.60 0.19 -25.14 16 8 H 0.05 2.58 7.92 -2.91 -0.02 2.56 16 9 C 0.04 1.84 1.91 -52.93 -0.10 1.74 16 10 C 0.10 4.40 4.75 86.30 0.41 4.81 16 11 N -0.52 -19.34 4.58 -896.36 -4.10 -23.44 16 12 C 0.03 1.15 4.34 86.32 0.37 1.53 16 13 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 14 C -0.12 -2.46 4.97 30.67 0.15 -2.30 16 15 C 0.16 4.02 3.29 45.04 0.15 4.17 16 16 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 17 N -0.28 -7.35 3.26 -326.93 -1.06 -8.41 16 18 C -0.04 -0.82 10.68 83.49 0.89 0.07 16 19 C -0.06 -1.29 12.05 83.73 1.01 -0.28 16 20 N -0.31 -9.46 12.41 -58.25 -0.72 -10.18 16 21 N -0.13 -4.01 13.17 37.02 0.49 -3.52 16 22 C 0.06 1.75 5.03 86.32 0.43 2.18 16 23 C -0.21 -9.24 9.91 30.62 0.30 -8.94 16 24 C -0.18 -7.52 9.96 30.62 0.30 -7.21 16 25 H 0.26 12.95 8.32 -92.71 -0.77 12.18 16 26 H 0.04 1.56 7.70 -2.38 -0.02 1.54 16 27 H 0.06 2.77 5.69 -2.39 -0.01 2.76 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.11 4.63 2.49 -2.39 -0.01 4.63 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.58 7.06 -2.39 -0.02 1.56 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.22 2.79 7.24 -2.91 -0.02 2.77 16 35 H 0.22 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.07 2.19 7.93 -2.38 -0.02 2.17 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -58.56 321.46 2.36 -56.20 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.01 Total: 23.98 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.58 Total: -29.15 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -5.16 Total: -90.90 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.92 Total: 39.87 kcal Total: -58.56 2.36 -56.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.361 kcal (2) G-P(sol) polarization free energy of solvation -58.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds