Wall clock time and date at job start Mon Mar 30 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48498 * 109.46778 * 185.00209 * 3 2 1 5 5 H 1.48504 * 109.47109 * 304.99971 * 3 2 1 6 6 H 1.48498 * 109.47225 * 65.00341 * 3 2 1 7 7 C 1.37874 * 119.99412 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99532 * 171.50936 * 7 2 1 9 9 C 1.50695 * 120.00965 * 351.50601 * 7 2 1 10 10 C 1.53002 * 115.54921 * 324.28658 * 9 7 2 11 11 N 1.46898 * 109.46929 * 305.97868 * 10 9 7 12 12 C 1.46850 * 110.99744 * 306.58641 * 11 10 9 13 13 C 1.53040 * 109.52197 * 174.16370 * 12 11 10 14 14 C 1.53118 * 109.31280 * 59.15325 * 13 12 11 15 15 C 1.53110 * 109.16344 * 302.40741 * 14 13 12 16 16 H 1.09007 * 109.50379 * 297.63402 * 15 14 13 17 17 N 1.46497 * 109.50834 * 177.55644 * 15 14 13 18 18 C 1.35319 * 125.86287 * 325.07726 * 17 15 14 19 19 C 1.35355 * 106.17052 * 180.02562 * 18 17 15 20 20 N 1.33767 * 106.49798 * 0.26410 * 19 18 17 21 21 N 1.28637 * 108.88707 * 359.56239 * 20 19 18 22 22 C 1.46841 * 111.00110 * 182.37765 * 11 10 9 23 23 C 1.53002 * 117.50069 * 109.94540 * 9 7 2 24 24 C 1.52994 * 117.50703 * 178.60974 * 9 7 2 25 25 H 0.97004 * 119.99938 * 5.00458 * 1 2 3 26 26 H 1.08994 * 109.47256 * 185.97454 * 10 9 7 27 27 H 1.09004 * 109.47391 * 65.97149 * 10 9 7 28 28 H 1.08997 * 109.46224 * 294.17227 * 12 11 10 29 29 H 1.08992 * 109.46260 * 54.15514 * 12 11 10 30 30 H 1.09006 * 109.50264 * 179.12202 * 13 12 11 31 31 H 1.09007 * 109.50331 * 299.19168 * 13 12 11 32 32 H 1.09007 * 109.55702 * 182.47679 * 14 13 12 33 33 H 1.09003 * 109.48984 * 62.29203 * 14 13 12 34 34 H 1.07998 * 126.91205 * 359.97438 * 18 17 15 35 35 H 1.07999 * 126.74582 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.46789 * 65.82193 * 22 11 10 37 37 H 1.09005 * 109.46586 * 305.85078 * 22 11 10 38 38 H 1.08991 * 117.50400 * 215.00459 * 23 9 7 39 39 H 1.09001 * 117.49741 * 0.03414 * 23 9 7 40 40 H 1.09006 * 117.49719 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.50172 * 144.97484 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7045 1.3490 -0.1221 5 1 1.8012 2.4480 -1.1469 6 1 1.9843 2.3423 1.2689 7 6 2.0044 -1.1941 -0.0005 8 1 3.0756 -1.1992 -0.1386 9 6 1.2634 -2.4921 0.1916 10 6 0.0767 -2.4380 1.1558 11 7 0.5186 -1.8922 2.4460 12 6 1.6732 -2.6368 2.9647 13 6 2.1952 -1.9539 4.2309 14 6 1.0798 -1.9098 5.2790 15 6 -0.1287 -1.1721 4.6962 16 1 0.1493 -0.1436 4.4656 17 7 -1.2215 -1.1763 5.6718 18 6 -1.5106 -2.1783 6.5341 19 6 -2.5874 -1.7664 7.2433 20 7 -2.9037 -0.5512 6.7822 21 7 -2.0721 -0.2279 5.8557 22 6 -0.5833 -1.8777 3.4165 23 6 1.1516 -3.4270 -1.0144 24 6 2.0802 -3.7851 0.1487 25 1 -0.4850 0.8369 -0.0733 26 1 -0.3183 -3.4432 1.3026 27 1 -0.7017 -1.7991 0.7385 28 1 1.3711 -3.6571 3.2007 29 1 2.4608 -2.6561 2.2116 30 1 3.0425 -2.5156 4.6244 31 1 2.5111 -0.9382 3.9928 32 1 1.4337 -1.3851 6.1666 33 1 0.7917 -2.9265 5.5465 34 1 -0.9879 -3.1179 6.6354 35 1 -3.0945 -2.3135 8.0243 36 1 -0.8749 -2.9016 3.6503 37 1 -1.4347 -1.3459 2.9915 38 1 0.2328 -4.0035 -1.1208 39 1 1.6145 -3.1034 -1.9466 40 1 3.1537 -3.6969 -0.0191 41 1 1.7725 -4.5970 0.8076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602845628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:25 Heat of formation + Delta-G solvation = 135.878153 kcal Electronic energy + Delta-G solvation = -22380.405374 eV Core-core repulsion = 19298.690564 eV Total energy + Delta-G solvation = -3081.714810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.13949 -38.92347 -36.61842 -34.06926 -32.25468 -31.98088 -30.89813 -29.56240 -26.29848 -25.34477 -23.93858 -22.93603 -22.21973 -21.39886 -21.04201 -19.43027 -18.96815 -17.53207 -16.28265 -15.95757 -15.18940 -14.95368 -14.70221 -14.37163 -14.06419 -13.96090 -13.76455 -13.21580 -12.96745 -12.74975 -12.38260 -11.64914 -11.51389 -11.46465 -11.39695 -10.98460 -10.93004 -10.75316 -10.60342 -10.49057 -10.42250 -10.33906 -10.08070 -9.85795 -9.34880 -9.27834 -9.01050 -8.67312 -8.05399 -7.41226 -5.93820 -3.98786 1.73976 2.45251 2.68822 3.31382 3.41360 3.42301 4.35118 4.43229 4.56115 4.63591 4.83355 5.00687 5.06777 5.11179 5.25181 5.33731 5.37311 5.55346 5.59766 5.66553 5.84273 5.89229 5.95335 6.03861 6.05490 6.15749 6.24723 6.25434 6.45339 6.55382 6.60138 6.60956 6.69016 6.72906 6.89362 7.10385 7.27258 7.53165 7.94220 7.98595 8.05871 8.46735 8.65447 8.95221 9.62667 11.07548 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.005913 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.165114 B = 4734.002770 C = 5288.293219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.091 3.909 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.482 4.482 8 H 0.055 0.945 9 C 0.064 3.936 10 C 0.107 3.893 11 N -0.491 5.491 12 C 0.051 3.949 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.144 3.856 16 H 0.123 0.877 17 N -0.275 5.275 18 C -0.051 4.051 19 C -0.060 4.060 20 N -0.282 5.282 21 N -0.081 5.081 22 C 0.057 3.943 23 C -0.205 4.205 24 C -0.219 4.219 25 H 0.258 0.742 26 H -0.014 1.014 27 H 0.120 0.880 28 H 0.014 0.986 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -6.713 10.704 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.113 4.113 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.063 3.937 10 C -0.020 4.020 11 N -0.215 5.215 12 C -0.077 4.077 13 C -0.150 4.150 14 C -0.163 4.163 15 C 0.043 3.957 16 H 0.141 0.859 17 N -0.069 5.069 18 C -0.203 4.203 19 C -0.217 4.217 20 N -0.147 5.147 21 N -0.061 5.061 22 C -0.073 4.073 23 C -0.244 4.244 24 C -0.257 4.257 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.137 0.863 28 H 0.032 0.968 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.201 0.799 35 H 0.203 0.797 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.379 -4.656 10.228 11.244 hybrid contribution 0.600 -1.288 0.389 1.473 sum 0.978 -5.945 10.616 12.207 Atomic orbital electron populations 1.69749 1.05990 1.26291 1.48731 1.24735 0.94533 0.98464 0.93562 0.86619 0.80037 0.84093 0.77558 1.20076 1.21486 1.20796 1.20283 0.92909 0.88692 1.49967 0.92658 1.18951 0.93381 0.88740 0.92595 1.21796 0.99375 0.94102 0.86692 1.61622 1.03775 1.54322 1.01744 1.22246 0.96021 0.92912 0.96524 1.21577 0.96074 1.03011 0.94369 1.21971 0.94723 1.00126 0.99443 1.21908 0.82642 1.04671 0.86529 0.85906 1.47783 1.22413 1.11351 1.25313 1.23581 1.02254 0.97679 0.96800 1.23552 0.98571 0.95135 1.04491 1.75099 1.19306 1.13376 1.06961 1.78368 0.99178 1.13722 1.14788 1.22225 0.96312 0.97594 0.91179 1.22993 0.99363 1.07451 0.94559 1.23002 0.96988 1.02159 1.03533 0.93119 0.99635 0.86253 0.96818 0.87884 0.91123 0.90261 0.91171 0.91407 0.79855 0.79743 0.95764 0.89916 0.91999 0.90348 0.90721 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.85 10.69 55.43 0.59 -22.25 16 2 C 0.09 2.33 5.19 -17.82 -0.09 2.24 16 3 Si 0.89 20.49 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.48 -12.14 8.31 -34.44 -0.29 -12.42 16 8 H 0.06 1.42 7.83 -52.49 -0.41 1.01 16 9 C 0.06 1.46 1.08 -155.66 -0.17 1.29 16 10 C 0.11 2.32 4.17 -3.82 -0.02 2.30 16 11 N -0.49 -9.48 4.34 -234.67 -1.02 -10.50 16 12 C 0.05 0.85 4.80 -3.83 -0.02 0.84 16 13 C -0.11 -1.51 6.09 -26.65 -0.16 -1.68 16 14 C -0.12 -1.49 4.97 -26.61 -0.13 -1.62 16 15 C 0.14 2.14 3.29 -67.85 -0.22 1.91 16 16 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 17 N -0.27 -4.10 3.26 -54.68 -0.18 -4.28 16 18 C -0.05 -0.62 10.68 -17.04 -0.18 -0.80 16 19 C -0.06 -0.76 12.05 -17.74 -0.21 -0.97 16 20 N -0.28 -4.70 12.41 30.23 0.38 -4.33 16 21 N -0.08 -1.43 13.17 60.35 0.79 -0.64 16 22 C 0.06 0.97 5.07 -3.83 -0.02 0.95 16 23 C -0.20 -4.42 9.96 -26.69 -0.27 -4.69 16 24 C -0.22 -4.40 8.16 -26.70 -0.22 -4.62 16 25 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 26 H -0.01 -0.30 8.09 -51.93 -0.42 -0.72 16 27 H 0.12 2.94 5.99 -51.93 -0.31 2.63 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.94 5.36 -51.93 -0.28 1.67 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.71 7.06 -51.93 -0.37 0.35 16 34 H 0.18 1.55 7.24 -52.49 -0.38 1.17 16 35 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -27.85 326.05 -7.92 -35.76 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.37 Total: 3.14 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.00 Total: -17.28 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.57 Total: -42.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.85 -7.92 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.643 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds