Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48498 * 109.46778 * 185.00209 * 3 2 1 5 5 H 1.48504 * 109.47109 * 304.99971 * 3 2 1 6 6 H 1.48498 * 109.47225 * 65.00341 * 3 2 1 7 7 C 1.37874 * 119.99412 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99532 * 171.50936 * 7 2 1 9 9 C 1.50695 * 120.00965 * 351.50601 * 7 2 1 10 10 C 1.53002 * 115.54921 * 324.28658 * 9 7 2 11 11 N 1.46898 * 109.46929 * 305.97868 * 10 9 7 12 12 C 1.46850 * 110.99744 * 306.58641 * 11 10 9 13 13 C 1.53040 * 109.52197 * 174.16370 * 12 11 10 14 14 C 1.53118 * 109.31280 * 59.15325 * 13 12 11 15 15 C 1.53110 * 109.16344 * 302.40741 * 14 13 12 16 16 H 1.09007 * 109.50379 * 297.63402 * 15 14 13 17 17 N 1.46497 * 109.50834 * 177.55644 * 15 14 13 18 18 C 1.35319 * 125.86287 * 325.07726 * 17 15 14 19 19 C 1.35355 * 106.17052 * 180.02562 * 18 17 15 20 20 N 1.33767 * 106.49798 * 0.26410 * 19 18 17 21 21 N 1.28637 * 108.88707 * 359.56239 * 20 19 18 22 22 C 1.46841 * 111.00110 * 182.37765 * 11 10 9 23 23 C 1.53002 * 117.50069 * 109.94540 * 9 7 2 24 24 C 1.52994 * 117.50703 * 178.60974 * 9 7 2 25 25 H 0.97004 * 119.99938 * 5.00458 * 1 2 3 26 26 H 1.08994 * 109.47256 * 185.97454 * 10 9 7 27 27 H 1.09004 * 109.47391 * 65.97149 * 10 9 7 28 28 H 1.08997 * 109.46224 * 294.17227 * 12 11 10 29 29 H 1.08992 * 109.46260 * 54.15514 * 12 11 10 30 30 H 1.09006 * 109.50264 * 179.12202 * 13 12 11 31 31 H 1.09007 * 109.50331 * 299.19168 * 13 12 11 32 32 H 1.09007 * 109.55702 * 182.47679 * 14 13 12 33 33 H 1.09003 * 109.48984 * 62.29203 * 14 13 12 34 34 H 1.07998 * 126.91205 * 359.97438 * 18 17 15 35 35 H 1.07999 * 126.74582 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.46789 * 65.82193 * 22 11 10 37 37 H 1.09005 * 109.46586 * 305.85078 * 22 11 10 38 38 H 1.08991 * 117.50400 * 215.00459 * 23 9 7 39 39 H 1.09001 * 117.49741 * 0.03414 * 23 9 7 40 40 H 1.09006 * 117.49719 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.50172 * 144.97484 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7045 1.3490 -0.1221 5 1 1.8012 2.4480 -1.1469 6 1 1.9843 2.3423 1.2689 7 6 2.0044 -1.1941 -0.0005 8 1 3.0756 -1.1992 -0.1386 9 6 1.2634 -2.4921 0.1916 10 6 0.0767 -2.4380 1.1558 11 7 0.5186 -1.8922 2.4460 12 6 1.6732 -2.6368 2.9647 13 6 2.1952 -1.9539 4.2309 14 6 1.0798 -1.9098 5.2790 15 6 -0.1287 -1.1721 4.6962 16 1 0.1493 -0.1436 4.4656 17 7 -1.2215 -1.1763 5.6718 18 6 -1.5106 -2.1783 6.5341 19 6 -2.5874 -1.7664 7.2433 20 7 -2.9037 -0.5512 6.7822 21 7 -2.0721 -0.2279 5.8557 22 6 -0.5833 -1.8777 3.4165 23 6 1.1516 -3.4270 -1.0144 24 6 2.0802 -3.7851 0.1487 25 1 -0.4850 0.8369 -0.0733 26 1 -0.3183 -3.4432 1.3026 27 1 -0.7017 -1.7991 0.7385 28 1 1.3711 -3.6571 3.2007 29 1 2.4608 -2.6561 2.2116 30 1 3.0425 -2.5156 4.6244 31 1 2.5111 -0.9382 3.9928 32 1 1.4337 -1.3851 6.1666 33 1 0.7917 -2.9265 5.5465 34 1 -0.9879 -3.1179 6.6354 35 1 -3.0945 -2.3135 8.0243 36 1 -0.8749 -2.9016 3.6503 37 1 -1.4347 -1.3459 2.9915 38 1 0.2328 -4.0035 -1.1208 39 1 1.6145 -3.1034 -1.9466 40 1 3.1537 -3.6969 -0.0191 41 1 1.7725 -4.5970 0.8076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602845628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = 119.016834 kcal Electronic energy + Delta-G solvation = -22381.136536 eV Core-core repulsion = 19298.690564 eV Total energy + Delta-G solvation = -3082.445971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -44.22827 -40.29325 -38.16986 -35.36100 -34.02577 -33.37283 -31.94597 -30.78544 -27.88100 -27.16711 -25.16139 -24.13955 -23.40202 -22.94224 -22.35756 -20.76903 -20.56946 -18.70841 -17.90262 -17.21870 -16.64200 -16.43851 -16.01283 -15.76514 -15.42213 -15.32491 -15.07923 -14.43547 -14.42772 -14.22377 -13.60398 -13.28360 -13.09205 -12.85041 -12.75635 -12.62555 -12.39076 -12.27624 -12.10104 -11.93193 -11.74232 -11.65789 -11.57808 -11.26257 -10.91817 -10.86604 -10.42113 -10.32568 -9.89366 -8.86272 -7.88592 -5.98191 0.68373 1.36302 1.43371 1.49697 1.55516 1.65328 2.50996 3.06990 3.28508 3.38086 3.63954 3.70373 3.75918 3.89316 4.14561 4.17594 4.19852 4.31882 4.40122 4.48979 4.50886 4.59831 4.65090 4.71935 4.75876 4.84255 4.94849 4.98012 4.98724 5.02732 5.16960 5.27069 5.30055 5.42564 5.49741 5.57539 5.66993 5.70221 6.08053 6.40776 6.50110 6.66624 7.00366 7.55606 7.64232 9.09143 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.005913 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.165114 B = 4734.002770 C = 5288.293219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.055 3.945 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.486 4.486 8 H 0.045 0.955 9 C 0.037 3.963 10 C 0.119 3.881 11 N -0.512 5.512 12 C 0.052 3.948 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.152 3.848 16 H 0.095 0.905 17 N -0.279 5.279 18 C -0.036 4.036 19 C -0.061 4.061 20 N -0.314 5.314 21 N -0.136 5.136 22 C 0.066 3.934 23 C -0.212 4.212 24 C -0.187 4.187 25 H 0.252 0.748 26 H -0.007 1.007 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.224 0.776 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -9.061 12.884 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.147 4.147 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.036 3.964 10 C -0.008 4.008 11 N -0.236 5.236 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.150 4.150 15 C 0.050 3.950 16 H 0.113 0.887 17 N -0.073 5.073 18 C -0.187 4.187 19 C -0.219 4.219 20 N -0.178 5.178 21 N -0.114 5.114 22 C -0.064 4.064 23 C -0.251 4.251 24 C -0.224 4.224 25 H 0.062 0.938 26 H 0.011 0.989 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.240 0.760 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.547 -6.991 12.404 14.322 hybrid contribution 0.227 -0.638 -0.292 0.738 sum 1.774 -7.629 12.111 14.423 Atomic orbital electron populations 1.69909 1.06760 1.26125 1.49960 1.25218 0.95019 1.00535 0.93892 0.85908 0.79386 0.81610 0.76911 1.19520 1.21828 1.21355 1.20438 0.92481 0.90064 1.49304 0.93717 1.19003 0.94651 0.88900 0.93812 1.21442 0.97973 0.93565 0.87839 1.61478 1.05182 1.55362 1.01584 1.22241 0.94179 0.93903 0.97247 1.21543 0.97537 1.01942 0.93425 1.21947 0.92382 1.01489 0.99165 1.21733 0.83806 1.03351 0.86128 0.88720 1.47791 1.22009 1.11862 1.25599 1.24337 1.01679 0.97996 0.94735 1.24288 0.98757 0.93933 1.04960 1.75043 1.19777 1.15604 1.07398 1.78369 1.00847 1.15650 1.16568 1.22063 0.94656 0.98112 0.91528 1.22997 1.00396 1.07423 0.94282 1.22943 0.96701 1.00727 1.02059 0.93792 0.98917 0.89941 0.95108 0.90176 0.87801 0.92383 0.89299 0.88443 0.75462 0.75974 0.94158 0.93481 0.91037 0.91361 0.90402 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.36 10.69 21.45 0.23 -48.14 16 2 C 0.05 2.86 5.19 84.65 0.44 3.30 16 3 Si 0.93 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.49 -24.73 8.31 25.60 0.21 -24.51 16 8 H 0.04 2.32 7.83 -2.91 -0.02 2.29 16 9 C 0.04 1.68 1.08 -52.93 -0.06 1.62 16 10 C 0.12 5.21 4.17 86.30 0.36 5.57 16 11 N -0.51 -19.65 4.34 -896.36 -3.89 -23.55 16 12 C 0.05 1.62 4.80 86.33 0.41 2.04 16 13 C -0.11 -2.56 6.09 30.65 0.19 -2.37 16 14 C -0.11 -2.26 4.97 30.67 0.15 -2.11 16 15 C 0.15 4.34 3.29 45.04 0.15 4.49 16 16 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 17 N -0.28 -7.94 3.26 -326.91 -1.06 -9.01 16 18 C -0.04 -0.73 10.68 83.49 0.89 0.16 16 19 C -0.06 -1.38 12.05 83.73 1.01 -0.37 16 20 N -0.31 -10.28 12.41 -58.26 -0.72 -11.00 16 21 N -0.14 -4.84 13.17 37.02 0.49 -4.35 16 22 C 0.07 2.23 5.07 86.33 0.44 2.67 16 23 C -0.21 -9.02 9.96 30.62 0.30 -8.71 16 24 C -0.19 -7.15 8.16 30.62 0.25 -6.90 16 25 H 0.25 13.55 8.32 -92.71 -0.77 12.78 16 26 H -0.01 -0.29 8.09 -2.39 -0.02 -0.31 16 27 H 0.08 4.23 5.99 -2.39 -0.01 4.22 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 2.89 5.36 -2.39 -0.01 2.88 16 30 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.10 1.46 7.06 -2.39 -0.02 1.44 16 34 H 0.23 2.42 7.24 -2.91 -0.02 2.40 16 35 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.89 8.12 -2.38 -0.02 1.87 16 38 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 41 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -63.49 326.05 2.82 -60.67 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.01 Total: 15.55 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 4.75 Total: -25.12 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.96 Total: -96.03 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.49 2.82 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.686 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds