Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30835 * 125.89696 * 2 1 4 4 N 1.40087 * 108.20780 * 179.97438 * 3 2 1 5 5 C 1.46501 * 126.03943 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92162 * 359.76274 * 4 3 2 7 7 C 1.50698 * 126.12500 * 180.24087 * 6 4 3 8 8 C 1.35319 * 107.74581 * 0.38304 * 6 4 3 9 9 C 1.50700 * 126.03739 * 179.87243 * 8 6 4 10 10 N 1.46906 * 109.47183 * 269.71974 * 9 8 6 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99770 * 12 11 10 14 14 C 1.47196 * 109.47160 * 294.99517 * 12 11 10 15 15 N 5.80813 * 66.73833 * 228.98872 * 2 1 3 16 16 C 1.53002 * 109.46776 * 174.99873 * 12 11 10 17 17 C 1.50701 * 109.46807 * 184.99822 * 16 12 11 18 18 H 1.07998 * 120.00496 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99849 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46778 * 89.99942 * 21 19 17 23 23 H 1.48494 * 109.46946 * 209.99639 * 21 19 17 24 24 H 1.48502 * 109.47167 * 330.00099 * 21 19 17 25 25 H 1.08999 * 109.47196 * 270.01840 * 1 2 3 26 26 H 1.08997 * 109.47530 * 30.02521 * 1 2 3 27 27 H 1.09004 * 109.46503 * 150.02555 * 1 2 3 28 28 H 1.08995 * 109.46972 * 89.97538 * 5 4 3 29 29 H 1.08998 * 109.47143 * 209.97803 * 5 4 3 30 30 H 1.09004 * 109.46845 * 329.97800 * 5 4 3 31 31 H 1.09007 * 109.46927 * 270.17078 * 7 6 4 32 32 H 1.08993 * 109.47644 * 30.17332 * 7 6 4 33 33 H 1.09002 * 109.46909 * 150.17843 * 7 6 4 34 34 H 1.08995 * 109.46796 * 149.72178 * 9 8 6 35 35 H 1.09002 * 109.47497 * 29.71972 * 9 8 6 36 36 H 1.00898 * 110.99995 * 303.95361 * 10 9 8 37 37 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 38 38 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 39 39 H 1.08993 * 109.47416 * 304.99509 * 16 12 11 40 40 H 1.09001 * 109.46966 * 65.00241 * 16 12 11 41 41 H 0.97010 * 119.99808 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5009 0.0013 6 6 3.6143 -0.7153 0.0063 7 6 4.8351 -1.5988 0.0140 8 6 2.3272 -1.1330 0.0006 9 6 1.8600 -2.5658 0.0011 10 7 1.7089 -3.0321 -1.3837 11 6 1.2531 -4.4281 -1.4223 12 6 1.1083 -4.8772 -2.8777 13 1 2.0483 -4.7121 -3.4041 14 6 0.0395 -4.1006 -3.5268 15 7 -0.7868 -3.5015 -4.0264 16 6 0.7548 -6.3652 -2.9194 17 6 0.7326 -6.8363 -4.3507 18 1 0.9487 -6.1436 -5.1507 19 6 0.4356 -8.1514 -4.6392 20 7 0.1710 -8.9946 -3.6652 21 14 0.4074 -8.7352 -6.4134 22 1 1.7590 -9.2156 -6.7978 23 1 -0.5705 -9.8437 -6.5543 24 1 0.0116 -7.6103 -7.2984 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3632 -0.8903 -0.5135 28 1 5.0820 1.7160 1.0291 29 1 5.6097 0.9983 -0.5118 30 1 4.5566 2.4333 -0.5128 31 1 5.1346 -1.8136 -1.0119 32 1 5.6486 -1.0900 0.5310 33 1 4.6050 -2.5319 0.5282 34 1 0.9011 -2.6350 0.5145 35 1 2.5933 -3.1869 0.5156 36 1 1.0826 -2.4332 -1.9006 37 1 0.2898 -4.5099 -0.9188 38 1 1.9819 -5.0623 -0.9175 39 1 1.5007 -6.9317 -2.3620 40 1 -0.2271 -6.5181 -2.4714 41 1 -0.0376 -9.9200 -3.8681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604559134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = 61.287732 kcal Electronic energy + Delta-G solvation = -20633.094940 eV Core-core repulsion = 17548.145647 eV Total energy + Delta-G solvation = -3084.949293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.27945 -38.83497 -36.68978 -35.52427 -34.95192 -33.77460 -32.38539 -30.44681 -29.27264 -27.72736 -26.58513 -24.96106 -23.59628 -23.49897 -20.53736 -20.37362 -18.51297 -18.20832 -17.26362 -16.76841 -16.70834 -16.51629 -15.47492 -15.07318 -14.88337 -14.63381 -14.42140 -14.30313 -14.19282 -14.06864 -13.82290 -13.81087 -13.43250 -13.41591 -13.08641 -12.94723 -12.76332 -12.73769 -12.66231 -12.48358 -12.40627 -12.29065 -11.91777 -11.45038 -11.29908 -11.11137 -10.52157 -9.95667 -9.41844 -9.11170 -8.17192 -6.24886 0.93611 1.41463 1.43409 1.52422 1.67510 1.71848 1.98074 2.00574 2.43427 3.18103 3.30426 3.44726 3.60487 3.80438 4.12543 4.20999 4.33954 4.37266 4.42248 4.46702 4.52035 4.62732 4.66420 4.71355 4.75865 4.79906 4.91575 4.96898 5.02831 5.07560 5.15121 5.19335 5.38782 5.51200 5.67531 5.75502 5.82741 6.11671 6.22324 6.26554 6.39027 6.79110 6.80143 6.90520 7.43444 8.93580 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.003298 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.254416 B = 8488.364594 C = 8816.380586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.066 3.934 3 N -0.340 5.340 4 N -0.383 5.383 5 C 0.093 3.907 6 C 0.106 3.894 7 C -0.087 4.087 8 C -0.257 4.257 9 C 0.144 3.856 10 N -0.685 5.685 11 C 0.078 3.922 12 C 0.019 3.981 13 H 0.122 0.878 14 C 0.251 3.749 15 N -0.508 5.508 16 C 0.039 3.961 17 C -0.539 4.539 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.947 3.053 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.278 1.278 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.094 0.906 36 H 0.329 0.671 37 H 0.033 0.967 38 H 0.111 0.889 39 H 0.039 0.961 40 H 0.000 1.000 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 16.065 12.199 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 N -0.163 5.163 4 N -0.165 5.165 5 C -0.047 4.047 6 C -0.023 4.023 7 C -0.145 4.145 8 C -0.269 4.269 9 C 0.015 3.985 10 N -0.316 5.316 11 C -0.052 4.052 12 C -0.003 4.003 13 H 0.139 0.861 14 C -0.065 4.065 15 N -0.186 5.186 16 C 0.001 3.999 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.203 1.203 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.051 0.949 38 H 0.129 0.871 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.393 18.020 11.420 24.186 hybrid contribution -1.089 -1.334 -0.708 1.862 sum 10.305 16.686 10.712 22.346 Atomic orbital electron populations 1.20194 0.86135 1.03092 1.03594 1.22564 0.97581 0.90833 0.98994 1.77202 0.87688 1.23458 1.27990 1.48649 1.05558 1.04971 1.57332 1.22132 0.83237 0.94797 1.04506 1.21410 0.97900 0.84514 0.98495 1.20562 0.91589 0.98022 1.04331 1.19763 0.91883 0.95836 1.19383 1.20100 0.99855 0.89866 0.88725 1.60664 1.54293 1.02443 1.14168 1.21954 1.00077 0.90087 0.93085 1.19261 0.92415 0.93481 0.95148 0.86061 1.29757 0.93616 0.91161 0.91939 1.81044 1.12612 1.13809 1.11124 1.18982 0.96755 0.88168 0.96043 1.21569 1.47282 0.95028 0.93839 0.92983 1.25688 0.94993 0.97291 1.00715 1.70030 1.48321 1.04788 1.33108 0.85717 0.78392 0.77744 0.80848 1.19108 1.21039 1.20272 0.89242 0.91041 0.90917 0.89421 0.87101 0.89449 0.89428 0.89292 0.88684 0.94525 0.88763 0.85418 0.94881 0.87109 0.94246 0.98113 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.12 71.24 0.72 -0.83 16 2 C 0.07 1.72 7.22 43.10 0.31 2.03 16 3 N -0.34 -9.40 12.58 -47.38 -0.60 -10.00 16 4 N -0.38 -8.32 4.01 -356.03 -1.43 -9.75 16 5 C 0.09 1.11 11.09 127.77 1.42 2.52 16 6 C 0.11 2.20 6.93 41.40 0.29 2.48 16 7 C -0.09 -1.12 9.68 71.24 0.69 -0.43 16 8 C -0.26 -6.13 5.61 -20.14 -0.11 -6.25 16 9 C 0.14 3.12 5.63 85.56 0.48 3.60 16 10 N -0.69 -17.40 6.49 -517.91 -3.36 -20.76 16 11 C 0.08 2.13 5.12 86.30 0.44 2.58 16 12 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 13 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 14 C 0.25 10.13 12.98 89.44 1.16 11.29 16 15 N -0.51 -22.35 18.54 20.01 0.37 -21.98 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -28.50 8.60 25.60 0.22 -28.28 16 18 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 19 C 0.01 0.66 5.46 84.66 0.46 1.12 16 20 N -0.92 -52.66 13.29 21.45 0.28 -52.38 16 21 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 0.74 7.67 -2.39 -0.02 0.72 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 0.71 7.74 -2.39 -0.02 0.69 16 33 H 0.09 1.12 7.14 -2.39 -0.02 1.10 16 34 H 0.04 0.79 7.92 -2.39 -0.02 0.77 16 35 H 0.09 1.73 7.14 -2.39 -0.02 1.71 16 36 H 0.33 9.41 7.80 -89.70 -0.70 8.71 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -69.08 351.68 3.80 -65.28 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.33 Total: 11.73 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.18 Total: -7.60 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.73 Total: -114.86 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.08 3.80 -65.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604559134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.563 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds