Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38117 * 120.39917 * 2 1 4 4 C 1.39619 * 118.32779 * 180.24264 * 3 2 1 5 5 N 1.38545 * 120.53004 * 179.80109 * 4 3 2 6 6 C 1.46961 * 110.99943 * 179.71650 * 5 4 3 7 7 C 1.53059 * 109.36302 * 183.18705 * 6 5 4 8 8 N 1.46952 * 109.36370 * 301.60193 * 7 6 5 9 9 C 1.46906 * 110.99889 * 183.18679 * 8 7 6 10 10 C 1.50701 * 109.46965 * 170.00017 * 9 8 7 11 11 H 1.08005 * 120.00268 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99915 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00548 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99807 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47278 * 90.00449 * 14 12 10 16 16 H 1.48502 * 109.46981 * 210.00137 * 14 12 10 17 17 H 1.48498 * 109.47192 * 330.00330 * 14 12 10 18 18 C 1.46961 * 110.88410 * 59.32054 * 8 7 6 19 19 C 1.46955 * 111.00118 * 303.51862 * 5 4 3 20 20 N 1.32997 * 118.94029 * 359.52521 * 4 3 2 21 21 C 1.31743 * 120.68340 * 0.25289 * 20 4 3 22 22 C 1.50705 * 119.08137 * 180.02562 * 21 20 4 23 23 N 1.31789 * 121.83443 * 359.97438 * 21 20 4 24 24 H 1.09001 * 109.47072 * 270.23908 * 1 2 3 25 25 H 1.09005 * 109.47125 * 30.23778 * 1 2 3 26 26 H 1.09004 * 109.47244 * 150.23404 * 1 2 3 27 27 H 1.07992 * 120.83830 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.48904 * 63.22337 * 6 5 4 29 29 H 1.08989 * 109.49349 * 303.15536 * 6 5 4 30 30 H 1.08999 * 109.48651 * 181.63251 * 7 6 5 31 31 H 1.08996 * 109.48556 * 61.57139 * 7 6 5 32 32 H 1.08993 * 109.47164 * 289.99960 * 9 8 7 33 33 H 1.08996 * 109.46920 * 49.99994 * 9 8 7 34 34 H 0.96999 * 120.00406 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.48904 * 60.64354 * 18 8 7 36 36 H 1.09002 * 109.49205 * 180.70887 * 18 8 7 37 37 H 1.09008 * 109.48713 * 296.77978 * 19 5 4 38 38 H 1.09002 * 109.48661 * 56.81941 * 19 5 4 39 39 H 1.09009 * 109.46885 * 90.00300 * 22 21 20 40 40 H 1.08998 * 109.47297 * 209.99499 * 22 21 20 41 41 H 1.08995 * 109.46925 * 330.00360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1408 -0.0052 5 7 4.3476 2.3080 -0.0096 6 6 5.7872 2.0125 -0.0078 7 6 6.5742 3.3230 0.0675 8 7 6.2154 4.1733 -1.0760 9 6 7.0068 5.4109 -1.0807 10 6 6.7949 6.1378 -2.3837 11 1 6.1383 5.7218 -3.1336 12 6 7.4400 7.3334 -2.6189 13 7 7.2547 7.9681 -3.7558 14 14 8.5762 8.0525 -1.3223 15 1 9.9567 7.5503 -1.5402 16 1 8.5670 9.5341 -1.4227 17 1 8.1084 7.6449 0.0269 18 6 4.7758 4.4688 -1.0778 19 6 3.9888 3.1583 -1.1531 20 7 4.2023 -0.0455 -0.0003 21 6 3.4955 -1.1573 0.0043 22 6 4.2139 -2.4820 0.0104 23 7 2.1777 -1.1432 0.0048 24 1 -0.3633 0.0043 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5102 27 1 1.6863 2.1380 0.0004 28 1 6.0507 1.4822 -0.9230 29 1 6.0302 1.3923 0.8549 30 1 7.6424 3.1078 0.0397 31 1 6.3312 3.8402 0.9957 32 1 6.6910 6.0473 -0.2541 33 1 8.0632 5.1670 -0.9683 34 1 7.7083 8.8094 -3.9211 35 1 4.5123 4.9991 -0.1626 36 1 4.5329 5.0891 -1.9406 37 1 4.2319 2.6410 -2.0814 38 1 2.9206 3.3731 -1.1255 39 1 4.3867 -2.7969 1.0396 40 1 3.6050 -3.2280 -0.5003 41 1 5.1697 -2.3794 -0.5035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609144597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = 65.452317 kcal Electronic energy + Delta-G solvation = -21320.598306 eV Core-core repulsion = 18235.829603 eV Total energy + Delta-G solvation = -3084.768703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.32663 -38.96117 -35.83453 -34.47187 -32.80180 -31.83886 -30.82138 -29.33614 -28.67670 -27.87648 -25.36803 -23.56866 -22.18096 -21.96640 -21.09755 -19.50738 -17.77989 -16.97159 -16.77188 -15.61450 -15.44924 -14.92248 -14.57685 -14.42656 -14.35506 -14.08741 -13.77032 -13.57646 -13.36742 -13.05313 -12.67181 -12.48769 -12.40149 -12.27860 -12.07887 -11.64286 -11.15909 -11.04648 -10.95294 -10.83265 -10.50761 -10.46378 -10.24053 -9.89677 -9.64180 -9.32428 -9.28230 -8.61179 -8.41875 -7.48037 -6.09607 -4.07656 0.90798 1.07285 3.25876 3.33412 3.34013 3.35372 3.71254 3.86928 4.07960 4.38300 4.62624 4.69468 4.93344 5.07883 5.13641 5.22396 5.25892 5.28748 5.33324 5.35485 5.40811 5.49510 5.57093 5.61365 5.66467 5.71558 5.78814 5.82312 6.05981 6.18683 6.25518 6.39628 6.46310 6.56023 6.80001 6.91692 7.04927 7.19103 7.52429 7.80396 7.94068 8.15059 8.59367 8.97416 9.51847 11.03282 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.003687 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.742203 B = 7591.545212 C = 8040.947755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.188 3.812 3 C -0.253 4.253 4 C 0.370 3.630 5 N -0.475 5.475 6 C 0.073 3.927 7 C 0.049 3.951 8 N -0.529 5.529 9 C 0.163 3.837 10 C -0.512 4.512 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.065 3.935 19 C 0.065 3.935 20 N -0.560 5.560 21 C 0.343 3.657 22 C -0.083 4.083 23 N -0.549 5.549 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.032 0.968 32 H -0.009 1.009 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.034 0.966 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 -16.365 8.989 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.045 3.955 3 C -0.279 4.279 4 C 0.130 3.870 5 N -0.191 5.191 6 C -0.054 4.054 7 C -0.080 4.080 8 N -0.254 5.254 9 C 0.037 3.963 10 C -0.550 4.550 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.063 4.063 19 C -0.061 4.061 20 N -0.282 5.282 21 C 0.074 3.926 22 C -0.141 4.141 23 N -0.267 5.267 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.008 0.992 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.867 -16.939 8.869 21.516 hybrid contribution 0.287 1.522 0.887 1.785 sum -9.580 -15.417 9.756 20.606 Atomic orbital electron populations 1.20746 0.87961 1.03901 1.03479 1.21470 0.97296 0.87758 0.88983 1.22142 0.93931 1.00757 1.11050 1.20213 0.90487 0.88727 0.87613 1.59081 1.07602 1.11533 1.40928 1.22116 0.83388 0.97222 1.02666 1.22234 0.99361 0.93241 0.93156 1.62141 1.04152 1.19554 1.39584 1.20167 0.92883 0.85865 0.97421 1.21008 1.28654 1.04758 1.00587 0.90157 1.24892 0.96409 0.96671 0.95268 1.69888 1.43562 1.16738 1.23614 0.86865 0.81746 0.78480 0.82687 1.20113 1.21173 1.19266 1.22082 0.88177 0.93794 1.02258 1.22489 1.00251 0.94028 0.89312 1.68255 1.41558 0.98076 1.20280 1.23015 0.86546 0.94113 0.88885 1.20540 0.99983 0.89949 1.03664 1.68093 1.09496 1.30158 1.19002 0.89861 0.90163 0.90066 0.83688 0.92069 0.89870 0.90185 0.94966 0.99158 0.95612 0.92606 0.94778 0.88038 0.92485 0.89865 0.89802 0.89764 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.21 36.01 0.37 -0.44 16 2 C 0.19 2.23 6.81 -82.33 -0.56 1.67 16 3 C -0.25 -3.19 8.98 -39.11 -0.35 -3.54 16 4 C 0.37 5.45 6.40 -154.77 -0.99 4.46 16 5 N -0.47 -7.28 4.73 -172.86 -0.82 -8.10 16 6 C 0.07 1.14 4.80 -3.76 -0.02 1.12 16 7 C 0.05 0.85 5.61 -3.77 -0.02 0.83 16 8 N -0.53 -10.87 4.70 -235.91 -1.11 -11.98 16 9 C 0.16 3.87 3.79 -4.97 -0.02 3.85 16 10 C -0.51 -14.21 9.03 -34.44 -0.31 -14.52 16 11 H 0.08 2.41 7.38 -52.48 -0.39 2.03 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 14 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 18 C 0.07 1.21 5.43 -3.77 -0.02 1.19 16 19 C 0.06 0.99 5.38 -3.77 -0.02 0.97 16 20 N -0.56 -8.28 8.77 -9.96 -0.09 -8.37 16 21 C 0.34 4.55 7.64 -157.24 -1.20 3.35 16 22 C -0.08 -0.77 10.32 36.01 0.37 -0.40 16 23 N -0.55 -7.21 10.27 -7.07 -0.07 -7.28 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 1.54 7.27 -52.49 -0.38 1.16 16 28 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.08 1.23 7.84 -51.94 -0.41 0.82 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H -0.01 -0.22 7.18 -51.93 -0.37 -0.60 16 33 H 0.03 0.61 7.45 -51.93 -0.39 0.23 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 2.04 6.79 -51.93 -0.35 1.69 16 37 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.08 1.07 6.88 -51.93 -0.36 0.71 16 39 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -31.66 328.99 -10.35 -42.01 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.45 Total: -1.82 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.87 Total: 0.40 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.31 Total: -62.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.66 -10.35 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.460 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds