Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38117 * 120.39917 * 2 1 4 4 C 1.39619 * 118.32779 * 180.24264 * 3 2 1 5 5 N 1.38545 * 120.53004 * 179.80109 * 4 3 2 6 6 C 1.46961 * 110.99943 * 179.71650 * 5 4 3 7 7 C 1.53059 * 109.36302 * 183.18705 * 6 5 4 8 8 N 1.46952 * 109.36370 * 301.60193 * 7 6 5 9 9 C 1.46906 * 110.99889 * 183.18679 * 8 7 6 10 10 C 1.50701 * 109.46965 * 170.00017 * 9 8 7 11 11 H 1.08005 * 120.00268 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99915 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00548 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99807 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47278 * 90.00449 * 14 12 10 16 16 H 1.48502 * 109.46981 * 210.00137 * 14 12 10 17 17 H 1.48498 * 109.47192 * 330.00330 * 14 12 10 18 18 C 1.46961 * 110.88410 * 59.32054 * 8 7 6 19 19 C 1.46955 * 111.00118 * 303.51862 * 5 4 3 20 20 N 1.32997 * 118.94029 * 359.52521 * 4 3 2 21 21 C 1.31743 * 120.68340 * 0.25289 * 20 4 3 22 22 C 1.50705 * 119.08137 * 180.02562 * 21 20 4 23 23 N 1.31789 * 121.83443 * 359.97438 * 21 20 4 24 24 H 1.09001 * 109.47072 * 270.23908 * 1 2 3 25 25 H 1.09005 * 109.47125 * 30.23778 * 1 2 3 26 26 H 1.09004 * 109.47244 * 150.23404 * 1 2 3 27 27 H 1.07992 * 120.83830 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.48904 * 63.22337 * 6 5 4 29 29 H 1.08989 * 109.49349 * 303.15536 * 6 5 4 30 30 H 1.08999 * 109.48651 * 181.63251 * 7 6 5 31 31 H 1.08996 * 109.48556 * 61.57139 * 7 6 5 32 32 H 1.08993 * 109.47164 * 289.99960 * 9 8 7 33 33 H 1.08996 * 109.46920 * 49.99994 * 9 8 7 34 34 H 0.96999 * 120.00406 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.48904 * 60.64354 * 18 8 7 36 36 H 1.09002 * 109.49205 * 180.70887 * 18 8 7 37 37 H 1.09008 * 109.48713 * 296.77978 * 19 5 4 38 38 H 1.09002 * 109.48661 * 56.81941 * 19 5 4 39 39 H 1.09009 * 109.46885 * 90.00300 * 22 21 20 40 40 H 1.08998 * 109.47297 * 209.99499 * 22 21 20 41 41 H 1.08995 * 109.46925 * 330.00360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1408 -0.0052 5 7 4.3476 2.3080 -0.0096 6 6 5.7872 2.0125 -0.0078 7 6 6.5742 3.3230 0.0675 8 7 6.2154 4.1733 -1.0760 9 6 7.0068 5.4109 -1.0807 10 6 6.7949 6.1378 -2.3837 11 1 6.1383 5.7218 -3.1336 12 6 7.4400 7.3334 -2.6189 13 7 7.2547 7.9681 -3.7558 14 14 8.5762 8.0525 -1.3223 15 1 9.9567 7.5503 -1.5402 16 1 8.5670 9.5341 -1.4227 17 1 8.1084 7.6449 0.0269 18 6 4.7758 4.4688 -1.0778 19 6 3.9888 3.1583 -1.1531 20 7 4.2023 -0.0455 -0.0003 21 6 3.4955 -1.1573 0.0043 22 6 4.2139 -2.4820 0.0104 23 7 2.1777 -1.1432 0.0048 24 1 -0.3633 0.0043 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5102 27 1 1.6863 2.1380 0.0004 28 1 6.0507 1.4822 -0.9230 29 1 6.0302 1.3923 0.8549 30 1 7.6424 3.1078 0.0397 31 1 6.3312 3.8402 0.9957 32 1 6.6910 6.0473 -0.2541 33 1 8.0632 5.1670 -0.9683 34 1 7.7083 8.8094 -3.9211 35 1 4.5123 4.9991 -0.1626 36 1 4.5329 5.0891 -1.9406 37 1 4.2319 2.6410 -2.0814 38 1 2.9206 3.3731 -1.1255 39 1 4.3867 -2.7969 1.0396 40 1 3.6050 -3.2280 -0.5003 41 1 5.1697 -2.3794 -0.5035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609144597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = 43.782005 kcal Electronic energy + Delta-G solvation = -21321.538001 eV Core-core repulsion = 18235.829603 eV Total energy + Delta-G solvation = -3085.708398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -42.34462 -40.25132 -37.26153 -35.38019 -34.71830 -33.16117 -32.16212 -30.34068 -30.03111 -28.93811 -26.93097 -24.86654 -23.54264 -22.96493 -22.64922 -20.89960 -19.09827 -18.65314 -18.06359 -16.70138 -16.54386 -16.45678 -16.05211 -15.81494 -15.69941 -15.33029 -15.10146 -14.87042 -14.36906 -14.21345 -13.95694 -13.64722 -13.37590 -13.26385 -13.11151 -13.05899 -12.88228 -12.49906 -12.35135 -12.28179 -11.90219 -11.82296 -11.74037 -11.60891 -11.34814 -10.78287 -10.63021 -10.29672 -9.54675 -9.11393 -8.28556 -6.32287 -0.06085 0.07285 1.35953 1.36718 1.47294 2.23932 2.34365 2.72964 3.02964 3.03421 3.11542 3.14239 3.65657 3.87191 3.98044 4.10274 4.12453 4.21531 4.30553 4.33451 4.45667 4.52427 4.68736 4.70223 4.74466 4.75407 4.76900 4.83274 4.84896 4.92570 4.93783 5.01429 5.08780 5.16930 5.36654 5.46497 5.52127 5.87203 5.98820 6.16577 6.27701 6.58930 6.73443 7.16506 7.31536 8.87694 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.003687 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.742203 B = 7591.545212 C = 8040.947755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.185 3.815 3 C -0.256 4.256 4 C 0.348 3.652 5 N -0.477 5.477 6 C 0.085 3.915 7 C 0.052 3.948 8 N -0.547 5.547 9 C 0.173 3.827 10 C -0.517 4.517 11 H 0.040 0.960 12 C 0.010 3.990 13 N -0.946 5.946 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.252 1.252 18 C 0.069 3.931 19 C 0.077 3.923 20 N -0.579 5.579 21 C 0.329 3.671 22 C -0.080 4.080 23 N -0.558 5.558 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.036 0.964 32 H -0.009 1.009 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -17.410 11.001 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 C -0.281 4.281 4 C 0.109 3.891 5 N -0.194 5.194 6 C -0.042 4.042 7 C -0.076 4.076 8 N -0.272 5.272 9 C 0.046 3.954 10 C -0.555 4.555 11 H 0.058 0.942 12 C -0.187 4.187 13 N -0.587 5.587 14 Si 0.770 3.230 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.176 1.176 18 C -0.059 4.059 19 C -0.048 4.048 20 N -0.302 5.302 21 C 0.060 3.940 22 C -0.138 4.138 23 N -0.277 5.277 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.182 0.818 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.008 0.992 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.508 -18.023 10.895 23.535 hybrid contribution 0.367 1.736 0.198 1.785 sum -10.141 -16.287 11.093 22.162 Atomic orbital electron populations 1.20868 0.85035 1.05069 1.04752 1.22146 0.99169 0.87147 0.87438 1.22387 0.93112 1.02022 1.10583 1.20364 0.91368 0.88498 0.88865 1.59109 1.07286 1.12231 1.40775 1.21945 0.83790 0.96088 1.02395 1.22280 1.00257 0.93209 0.91871 1.62038 1.04962 1.18404 1.41766 1.19923 0.93640 0.86910 0.94936 1.21224 1.27634 1.05190 1.01454 0.94171 1.25809 0.98234 0.97118 0.97566 1.70039 1.45184 1.17470 1.26008 0.85732 0.79548 0.77577 0.80174 1.19080 1.20781 1.17556 1.21987 0.87532 0.95333 1.01071 1.22324 1.01212 0.92277 0.89008 1.68248 1.42303 0.98554 1.21053 1.23702 0.87007 0.94883 0.88376 1.20642 0.99905 0.88468 1.04764 1.68213 1.09516 1.30815 1.19178 0.88325 0.88276 0.89629 0.81794 0.93500 0.88761 0.89309 0.94544 0.99181 0.95148 0.92402 0.94521 0.90701 0.93963 0.87047 0.88375 0.88518 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.21 71.24 0.73 -0.54 16 2 C 0.18 3.96 6.81 42.42 0.29 4.25 16 3 C -0.26 -5.93 8.98 22.57 0.20 -5.73 16 4 C 0.35 9.81 6.40 133.16 0.85 10.67 16 5 N -0.48 -14.10 4.73 -700.79 -3.32 -17.42 16 6 C 0.08 2.58 4.80 86.31 0.41 2.99 16 7 C 0.05 1.74 5.61 86.31 0.48 2.23 16 8 N -0.55 -22.48 4.70 -900.27 -4.23 -26.71 16 9 C 0.17 8.19 3.79 85.56 0.32 8.51 16 10 C -0.52 -29.44 9.03 25.60 0.23 -29.21 16 11 H 0.04 2.54 7.38 -2.91 -0.02 2.52 16 12 C 0.01 0.59 5.47 84.65 0.46 1.06 16 13 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 14 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 18 C 0.07 2.58 5.43 86.31 0.47 3.04 16 19 C 0.08 2.33 5.38 86.31 0.46 2.80 16 20 N -0.58 -16.55 8.77 -185.44 -1.63 -18.18 16 21 C 0.33 8.26 7.64 138.77 1.06 9.33 16 22 C -0.08 -1.36 10.32 71.24 0.74 -0.62 16 23 N -0.56 -13.68 10.27 -176.28 -1.81 -15.49 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 0.89 8.10 -2.38 -0.02 0.87 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.16 3.03 7.27 -2.91 -0.02 3.01 16 28 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 29 H 0.09 2.66 7.84 -2.39 -0.02 2.65 16 30 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H -0.01 -0.45 7.18 -2.39 -0.02 -0.47 16 33 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.07 3.15 6.79 -2.39 -0.02 3.14 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.11 2.69 6.88 -2.39 -0.02 2.67 16 39 H 0.10 1.38 8.14 -2.38 -0.02 1.37 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.29 328.99 -1.13 -70.42 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.95 Total: 11.43 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.72 Total: 8.77 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -10.69 Total: -136.04 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -69.29 -1.13 -70.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.204 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds