Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47496 * 270.00082 * 3 2 1 5 5 H 1.48501 * 109.47012 * 29.99819 * 3 2 1 6 6 H 1.48496 * 109.47189 * 149.99890 * 3 2 1 7 7 C 1.37872 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00513 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99504 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47017 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46930 * 179.97438 * 11 10 9 13 13 C 1.46966 * 110.99811 * 190.00103 * 12 11 10 14 14 C 1.53465 * 109.74025 * 165.12485 * 13 12 11 15 15 N 1.46318 * 108.17463 * 49.59803 * 14 13 12 16 16 C 1.35934 * 123.86029 * 343.75728 * 15 14 13 17 17 N 1.29634 * 107.35633 * 179.75382 * 16 15 14 18 18 N 1.28988 * 109.47186 * 0.12110 * 17 16 15 19 19 C 1.30914 * 109.75758 * 359.96034 * 18 17 16 20 20 C 1.50703 * 126.48769 * 179.91411 * 19 18 17 21 21 C 1.53004 * 117.49349 * 8.64987 * 20 19 18 22 22 C 1.52998 * 117.49706 * 300.03025 * 20 19 18 23 23 C 1.47386 * 110.99747 * 65.72652 * 12 11 10 24 24 H 0.97005 * 120.00304 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47194 * 60.00164 * 9 7 2 26 26 H 1.08998 * 109.47016 * 299.99355 * 9 7 2 27 27 H 1.08997 * 109.46924 * 59.99603 * 10 9 7 28 28 H 1.08998 * 109.46859 * 299.99644 * 10 9 7 29 29 H 1.09008 * 109.46914 * 60.00254 * 11 10 9 30 30 H 1.08998 * 109.47336 * 300.00226 * 11 10 9 31 31 H 1.09001 * 109.42811 * 45.04453 * 13 12 11 32 32 H 1.08993 * 109.42752 * 285.20892 * 13 12 11 33 33 H 1.09002 * 109.72149 * 289.93547 * 14 13 12 34 34 H 1.08992 * 109.72593 * 169.26865 * 14 13 12 35 35 H 1.08996 * 115.55331 * 154.35585 * 20 19 18 36 36 H 1.08997 * 117.49792 * 0.02562 * 21 20 19 37 37 H 1.09001 * 117.49756 * 145.01936 * 21 20 19 38 38 H 1.09001 * 117.49476 * 214.97232 * 22 20 19 39 39 H 1.08998 * 117.50505 * 359.97406 * 22 20 19 40 40 H 1.08999 * 109.75364 * 54.57111 * 23 12 11 41 41 H 1.08999 * 109.75110 * 293.82766 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 7 6.0412 -4.0215 0.0004 13 6 7.4907 -4.0675 0.2386 14 6 7.9112 -5.4981 0.6015 15 7 7.3424 -6.4073 -0.3938 16 6 6.3375 -6.0671 -1.2437 17 7 6.0896 -7.1023 -1.9835 18 7 6.8748 -8.0689 -1.6475 19 6 7.6599 -7.6831 -0.6735 20 6 8.7189 -8.5126 0.0060 21 6 9.0494 -9.8753 -0.6061 22 6 8.2690 -9.7957 0.7075 23 6 5.6839 -4.7084 -1.2537 24 1 -0.4851 0.8401 -0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 3.6585 -3.1501 -0.8903 28 1 3.6580 -3.1505 0.8897 29 1 5.9149 -2.1227 0.8900 30 1 5.9149 -2.1225 -0.8900 31 1 7.7449 -3.3959 1.0587 32 1 8.0165 -3.7527 -0.6628 33 1 7.5325 -5.7529 1.5913 34 1 8.9983 -5.5757 0.5917 35 1 9.5368 -7.9519 0.4584 36 1 8.5013 -10.1716 -1.5004 37 1 10.0851 -10.2114 -0.5566 38 1 8.7913 -10.0793 1.6212 39 1 7.2071 -10.0397 0.6780 40 1 6.0454 -4.1321 -2.1053 41 1 4.6016 -4.8207 -1.3167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609283712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = 85.440454 kcal Electronic energy + Delta-G solvation = -20942.781662 eV Core-core repulsion = 17858.879709 eV Total energy + Delta-G solvation = -3083.901952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.39115 -39.53804 -38.10699 -36.47444 -35.25006 -33.58254 -32.22426 -30.86539 -28.87423 -26.83959 -25.22739 -24.80999 -23.41882 -23.19550 -21.69595 -21.28959 -20.74626 -18.87739 -18.28249 -17.74159 -16.99934 -16.58866 -16.39684 -15.97263 -15.78592 -15.47381 -15.17333 -14.82140 -14.71224 -13.93028 -13.75692 -13.56042 -13.28721 -13.04074 -12.84532 -12.69917 -12.48115 -12.37515 -12.32928 -12.03813 -11.78222 -11.60450 -11.50806 -11.43581 -11.33698 -11.19852 -11.05674 -10.74508 -10.05825 -9.49029 -8.27279 -6.32163 0.69867 1.38126 1.40565 1.42126 1.52451 1.65533 2.38512 2.49758 2.90540 3.08342 3.10291 3.29110 3.44135 3.75287 3.81316 3.94092 4.02215 4.09454 4.18602 4.26398 4.30151 4.33132 4.51778 4.62634 4.68585 4.72179 4.78264 4.81264 4.88289 4.92997 4.97186 5.03943 5.10515 5.15556 5.27496 5.52787 5.59322 5.68337 5.77632 5.81289 5.97089 6.31780 6.77313 7.32493 7.61922 8.90108 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041376 B = 0.003100 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.554802 B = 9030.026179 C = 9339.379420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.535 4.535 8 H 0.024 0.976 9 C -0.009 4.009 10 C -0.094 4.094 11 C 0.071 3.929 12 N -0.550 5.550 13 C 0.035 3.965 14 C 0.106 3.894 15 N -0.462 5.462 16 C 0.177 3.823 17 N -0.333 5.333 18 N -0.343 5.343 19 C 0.215 3.785 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.150 4.150 23 C 0.143 3.857 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.133 0.867 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.353 -12.305 4.268 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.573 4.573 8 H 0.043 0.957 9 C -0.046 4.046 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.275 5.275 13 C -0.093 4.093 14 C -0.015 4.015 15 N -0.152 5.152 16 C -0.092 4.092 17 N -0.173 5.173 18 N -0.183 5.183 19 C -0.053 4.053 20 C -0.116 4.116 21 C -0.184 4.184 22 C -0.188 4.188 23 C 0.013 3.987 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 26.370 -13.302 3.619 29.756 hybrid contribution -0.141 1.782 -0.090 1.789 sum 26.229 -11.520 3.528 28.864 Atomic orbital electron populations 1.70101 1.08612 1.28174 1.52881 1.26146 0.95664 1.03965 0.94106 0.85555 0.79702 0.77558 0.79167 1.19296 1.21345 1.15980 1.21556 0.92638 0.92839 1.50239 0.95744 1.19483 0.93411 0.94868 0.96882 1.21333 0.94221 0.97000 1.00670 1.22153 0.94758 0.86176 1.02498 1.62058 1.14685 1.17675 1.33124 1.22648 0.86836 0.96047 1.03756 1.22570 1.01136 0.86952 0.90882 1.46077 1.27983 1.11708 1.29407 1.24789 0.92764 0.99197 0.92498 1.73877 1.21223 0.97866 1.24299 1.74373 1.07197 1.22399 1.14349 1.24216 1.00130 0.84066 0.96896 1.20431 0.96655 0.89315 1.05229 1.23079 1.02902 0.95244 0.97220 1.23120 1.00921 0.96794 0.97957 1.20624 1.00474 0.85036 0.92578 0.92595 0.95442 0.96034 0.93922 0.93390 0.88285 0.93347 0.84898 0.92845 0.87491 0.84646 0.82435 0.89745 0.84795 0.84632 0.90577 0.90517 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.98 13.96 21.45 0.30 -60.68 16 2 C 0.00 -0.17 5.47 84.65 0.46 0.30 16 3 Si 0.96 43.44 27.47 68.60 1.88 45.32 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.53 -30.99 9.66 25.60 0.25 -30.75 16 8 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.09 -3.47 5.07 30.60 0.16 -3.31 16 11 C 0.07 1.80 4.96 86.30 0.43 2.23 16 12 N -0.55 -12.75 4.66 -898.19 -4.18 -16.93 16 13 C 0.03 0.49 5.55 86.45 0.48 0.97 16 14 C 0.11 1.33 7.12 86.57 0.62 1.95 16 15 N -0.46 -10.51 3.12 -504.43 -1.57 -12.08 16 16 C 0.18 5.26 7.86 138.12 1.09 6.35 16 17 N -0.33 -12.00 12.20 -50.27 -0.61 -12.61 16 18 N -0.34 -11.34 11.87 -50.58 -0.60 -11.94 16 19 C 0.21 5.22 7.60 138.21 1.05 6.27 16 20 C -0.10 -1.35 6.12 -11.54 -0.07 -1.42 16 21 C -0.15 -1.87 10.15 30.60 0.31 -1.56 16 22 C -0.15 -1.85 10.23 30.59 0.31 -1.54 16 23 C 0.14 3.87 5.45 85.49 0.47 4.34 16 24 H 0.27 15.73 8.31 -92.70 -0.77 14.95 16 25 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 26 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 27 H 0.04 1.65 6.69 -2.39 -0.02 1.64 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 2.16 7.87 -2.38 -0.02 2.14 16 30 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.13 1.18 7.83 -2.39 -0.02 1.16 16 32 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 41 H 0.10 3.05 6.79 -2.39 -0.02 3.03 16 Total: -1.00 -79.75 332.74 1.83 -77.91 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.95 Total: 7.43 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.67 Total: -16.42 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -6.67 Total: -114.25 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -79.75 1.83 -77.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609283712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.355 kcal (2) G-P(sol) polarization free energy of solvation -79.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds