Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38589 * 120.80357 * 2 1 4 4 N 1.32332 * 119.11000 * 179.97438 * 3 2 1 5 5 C 1.31801 * 120.81368 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.12039 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.46767 * 90.00021 * 6 5 4 8 8 C 1.46954 * 110.99966 * 66.20188 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18687 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 H 1.07998 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00039 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00084 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46853 * 90.00321 * 16 14 12 18 18 H 1.48499 * 109.47441 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47160 * 330.00512 * 16 14 12 20 20 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 21 21 C 1.46956 * 110.99532 * 189.99783 * 7 6 5 22 22 N 1.31796 * 121.75423 * 0.27367 * 5 4 3 23 23 C 1.32338 * 120.82020 * 359.44389 * 22 5 4 24 24 H 1.09000 * 109.47347 * 89.99738 * 1 2 3 25 25 H 1.09005 * 109.47373 * 210.00393 * 1 2 3 26 26 H 1.08998 * 109.47170 * 329.99751 * 1 2 3 27 27 H 1.08003 * 120.44225 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47356 * 330.00411 * 6 5 4 29 29 H 1.09003 * 109.47008 * 209.99742 * 6 5 4 30 30 H 1.08997 * 109.49355 * 63.21813 * 8 7 6 31 31 H 1.09004 * 109.48943 * 303.15264 * 8 7 6 32 32 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 33 33 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 34 34 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 35 35 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 36 36 H 0.96996 * 120.00282 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.49355 * 60.64341 * 20 10 9 38 38 H 1.09003 * 109.49032 * 180.68883 * 20 10 9 39 39 H 1.09002 * 109.48908 * 56.84799 * 21 7 6 40 40 H 1.09002 * 109.49369 * 296.77670 * 21 7 6 41 41 H 1.07993 * 120.45035 * 180.29191 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1809 -0.0001 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1774 -0.0002 1.3856 8 6 5.8310 -1.2554 2.0666 9 6 6.2873 -1.1838 3.5259 10 7 7.7366 -0.9456 3.5720 11 6 8.2262 -0.9456 4.9570 12 6 9.7332 -0.9456 4.9571 13 1 10.2732 -0.9460 4.0218 14 6 10.4226 -0.9461 6.1512 15 7 11.7377 -0.9467 6.1512 16 14 9.4885 -0.9461 7.7688 17 1 9.2406 -2.3463 8.1972 18 1 10.2913 -0.2466 8.8040 19 1 8.1912 -0.2457 7.5914 20 6 8.0831 0.3097 2.8910 21 6 7.6268 0.2380 1.4318 22 7 3.5394 -1.1514 -0.0053 23 6 2.2166 -1.1906 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6972 2.1372 -0.0004 28 1 6.0512 0.8898 -0.5132 29 1 6.0512 -0.8902 -0.5133 30 1 6.3294 -2.0881 1.5703 31 1 4.7516 -1.4032 2.0299 32 1 6.0573 -2.1249 4.0254 33 1 5.7684 -0.3681 4.0294 34 1 7.8629 -0.0556 5.4708 35 1 7.8629 -1.8356 5.4708 36 1 12.2227 -0.9467 6.9912 37 1 7.5847 1.1423 3.3873 38 1 9.1624 0.4576 2.9280 39 1 7.8568 1.1792 0.9322 40 1 8.1457 -0.5776 0.9282 41 1 1.6971 -2.1374 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = 65.471474 kcal Electronic energy + Delta-G solvation = -21141.209578 eV Core-core repulsion = 18056.441706 eV Total energy + Delta-G solvation = -3084.767872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30775 -38.72583 -35.56932 -33.91446 -33.86742 -32.37829 -30.45402 -29.82462 -27.82218 -25.90375 -24.87008 -23.83935 -23.03351 -21.89267 -20.96769 -19.20853 -17.90950 -17.03287 -16.70443 -16.13817 -14.97309 -14.79312 -14.64722 -14.38391 -14.36397 -14.21281 -13.83004 -13.66453 -13.31917 -13.12853 -12.83535 -12.77808 -12.39072 -11.99757 -11.70687 -11.44244 -11.14391 -10.98353 -10.90659 -10.76756 -10.55406 -10.35877 -10.05497 -9.78817 -9.43600 -9.35948 -9.23430 -8.54456 -8.18452 -7.32668 -6.03038 -4.00127 0.63900 0.91083 3.30592 3.37835 3.40856 3.40900 3.75939 3.97319 4.28375 4.34600 4.44523 4.49283 4.52354 4.81989 5.01488 5.13243 5.18323 5.29494 5.29525 5.37588 5.46717 5.55711 5.59932 5.67633 5.79657 5.82664 5.90682 6.01884 6.16623 6.23051 6.36657 6.53985 6.66891 6.79815 6.87252 7.00560 7.14290 7.25473 7.62662 7.94533 7.95796 8.08777 8.68653 9.05078 9.59042 11.10057 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.003486 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.450921 B = 8030.948066 C = 8436.826223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.201 4.201 3 C 0.146 3.854 4 N -0.498 5.498 5 C 0.328 3.672 6 C 0.121 3.879 7 N -0.533 5.533 8 C 0.063 3.937 9 C 0.055 3.945 10 N -0.529 5.529 11 C 0.162 3.838 12 C -0.508 4.508 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.068 3.932 21 C 0.061 3.939 22 N -0.510 5.510 23 C 0.146 3.854 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.028 0.972 34 H -0.011 1.011 35 H 0.023 0.977 36 H 0.263 0.737 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 2.375 -14.004 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.206 4.206 3 C -0.020 4.020 4 N -0.211 5.211 5 C 0.060 3.940 6 C -0.008 4.008 7 N -0.259 5.259 8 C -0.065 4.065 9 C -0.074 4.074 10 N -0.254 5.254 11 C 0.036 3.964 12 C -0.546 4.546 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.061 4.061 21 C -0.067 4.067 22 N -0.223 5.223 23 C -0.020 4.020 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.183 0.817 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.007 0.993 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.905 2.377 -13.880 25.206 hybrid contribution -1.482 -0.046 1.043 1.813 sum -22.387 2.331 -12.837 25.911 Atomic orbital electron populations 1.20632 0.89262 1.03491 1.02712 1.21712 0.99061 0.95806 1.03997 1.23181 0.89686 0.98146 0.91022 1.68266 1.09635 1.30578 1.12645 1.23053 0.97588 0.83231 0.90085 1.20747 0.85613 1.02832 0.91654 1.62130 1.15423 1.35462 1.12863 1.22175 0.99770 0.89862 0.94700 1.22114 0.90178 1.00243 0.94867 1.62116 1.10314 1.33862 1.19078 1.20154 0.97053 0.95058 0.84125 1.21032 0.88705 1.50191 0.94709 0.90123 1.24894 0.94732 0.94864 0.98840 1.69894 1.06104 1.51202 1.26809 0.86865 0.80326 0.78560 0.84034 1.20177 1.21212 1.19293 1.22031 1.01836 0.90706 0.91526 1.22260 0.85335 1.00615 0.98465 1.68302 1.09902 1.30695 1.13421 1.23152 0.89603 0.98169 0.91114 0.90747 0.90977 0.90981 0.81730 0.88313 0.92052 0.93701 0.91239 0.91036 0.95406 0.99342 0.95871 0.92690 0.95224 0.88750 0.90594 0.93753 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.06 36.01 0.36 -0.11 16 2 C -0.20 -1.66 5.91 -104.36 -0.62 -2.28 16 3 C 0.15 1.42 11.01 -17.21 -0.19 1.23 16 4 N -0.50 -6.49 10.34 -10.73 -0.11 -6.60 16 5 C 0.33 4.42 6.42 -157.19 -1.01 3.41 16 6 C 0.12 1.62 5.40 -4.97 -0.03 1.59 16 7 N -0.53 -8.40 4.70 -235.90 -1.11 -9.51 16 8 C 0.06 1.03 5.38 -3.77 -0.02 1.01 16 9 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 10 N -0.53 -11.58 4.70 -235.90 -1.11 -12.69 16 11 C 0.16 4.07 3.79 -4.98 -0.02 4.05 16 12 C -0.51 -14.62 9.03 -34.44 -0.31 -14.93 16 13 H 0.08 2.50 7.38 -52.49 -0.39 2.12 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 16 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 20 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 21 C 0.06 0.98 5.61 -3.76 -0.02 0.96 16 22 N -0.51 -6.47 9.19 -10.72 -0.10 -6.56 16 23 C 0.15 1.40 11.01 -17.20 -0.19 1.21 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 27 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 29 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 32 H 0.07 1.28 8.07 -51.93 -0.42 0.87 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 35 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.04 6.79 -51.93 -0.35 1.69 16 39 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -33.18 330.04 -10.00 -43.18 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.48 Total: -3.33 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.18 Total: 0.38 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -1.65 Total: -62.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.18 -10.00 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.654 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds