Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38589 * 120.80357 * 2 1 4 4 N 1.32332 * 119.11000 * 179.97438 * 3 2 1 5 5 C 1.31801 * 120.81368 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.12039 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.46767 * 90.00021 * 6 5 4 8 8 C 1.46954 * 110.99966 * 66.20188 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18687 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 H 1.07998 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00039 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00084 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46853 * 90.00321 * 16 14 12 18 18 H 1.48499 * 109.47441 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47160 * 330.00512 * 16 14 12 20 20 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 21 21 C 1.46956 * 110.99532 * 189.99783 * 7 6 5 22 22 N 1.31796 * 121.75423 * 0.27367 * 5 4 3 23 23 C 1.32338 * 120.82020 * 359.44389 * 22 5 4 24 24 H 1.09000 * 109.47347 * 89.99738 * 1 2 3 25 25 H 1.09005 * 109.47373 * 210.00393 * 1 2 3 26 26 H 1.08998 * 109.47170 * 329.99751 * 1 2 3 27 27 H 1.08003 * 120.44225 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47356 * 330.00411 * 6 5 4 29 29 H 1.09003 * 109.47008 * 209.99742 * 6 5 4 30 30 H 1.08997 * 109.49355 * 63.21813 * 8 7 6 31 31 H 1.09004 * 109.48943 * 303.15264 * 8 7 6 32 32 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 33 33 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 34 34 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 35 35 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 36 36 H 0.96996 * 120.00282 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.49355 * 60.64341 * 20 10 9 38 38 H 1.09003 * 109.49032 * 180.68883 * 20 10 9 39 39 H 1.09002 * 109.48908 * 56.84799 * 21 7 6 40 40 H 1.09002 * 109.49369 * 296.77670 * 21 7 6 41 41 H 1.07993 * 120.45035 * 180.29191 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1809 -0.0001 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1774 -0.0002 1.3856 8 6 5.8310 -1.2554 2.0666 9 6 6.2873 -1.1838 3.5259 10 7 7.7366 -0.9456 3.5720 11 6 8.2262 -0.9456 4.9570 12 6 9.7332 -0.9456 4.9571 13 1 10.2732 -0.9460 4.0218 14 6 10.4226 -0.9461 6.1512 15 7 11.7377 -0.9467 6.1512 16 14 9.4885 -0.9461 7.7688 17 1 9.2406 -2.3463 8.1972 18 1 10.2913 -0.2466 8.8040 19 1 8.1912 -0.2457 7.5914 20 6 8.0831 0.3097 2.8910 21 6 7.6268 0.2380 1.4318 22 7 3.5394 -1.1514 -0.0053 23 6 2.2166 -1.1906 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6972 2.1372 -0.0004 28 1 6.0512 0.8898 -0.5132 29 1 6.0512 -0.8902 -0.5133 30 1 6.3294 -2.0881 1.5703 31 1 4.7516 -1.4032 2.0299 32 1 6.0573 -2.1249 4.0254 33 1 5.7684 -0.3681 4.0294 34 1 7.8629 -0.0556 5.4708 35 1 7.8629 -1.8356 5.4708 36 1 12.2227 -0.9467 6.9912 37 1 7.5847 1.1423 3.3873 38 1 9.1624 0.4576 2.9280 39 1 7.8568 1.1792 0.9322 40 1 8.1457 -0.5776 0.9282 41 1 1.6971 -2.1374 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = 40.700218 kcal Electronic energy + Delta-G solvation = -21142.283741 eV Core-core repulsion = 18056.441706 eV Total energy + Delta-G solvation = -3085.842035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10435 -40.15246 -36.98919 -34.95113 -34.68889 -34.31456 -31.91354 -31.18350 -29.22080 -27.14066 -25.62519 -25.10919 -24.47943 -23.09693 -22.53078 -20.71093 -18.97612 -18.69334 -17.81866 -17.41900 -16.45017 -16.09901 -15.90231 -15.83671 -15.49436 -15.27790 -15.05397 -15.02482 -14.52959 -14.38317 -13.92311 -13.76931 -13.50515 -13.18690 -13.13539 -12.98380 -12.76789 -12.41535 -12.24719 -12.11577 -11.88293 -11.79849 -11.78094 -11.57012 -11.32340 -10.78830 -10.16254 -10.13638 -9.43851 -9.08443 -8.29228 -6.32650 -0.12717 0.17123 1.33738 1.35092 1.46012 2.33516 2.49726 2.93040 3.03063 3.14131 3.17097 3.27352 3.71637 3.90981 3.94699 3.97303 4.10271 4.14178 4.29640 4.32076 4.45386 4.47365 4.59550 4.62836 4.75712 4.79241 4.83934 4.84953 4.91238 4.93841 5.08152 5.10578 5.12844 5.17440 5.50560 5.51125 5.85543 5.91514 6.02008 6.06980 6.32260 6.61174 6.72791 7.14497 7.30927 8.87191 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.003486 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.450921 B = 8030.948066 C = 8436.826223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.185 4.185 3 C 0.131 3.869 4 N -0.524 5.524 5 C 0.304 3.696 6 C 0.125 3.875 7 N -0.539 5.539 8 C 0.077 3.923 9 C 0.056 3.944 10 N -0.543 5.543 11 C 0.173 3.827 12 C -0.516 4.516 13 H 0.041 0.959 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.947 3.053 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.256 1.256 20 C 0.070 3.930 21 C 0.072 3.928 22 N -0.531 5.531 23 C 0.132 3.868 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.193 0.807 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.023 0.977 34 H -0.016 1.016 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.023 0.977 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.511 2.410 -14.049 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.189 4.189 3 C -0.034 4.034 4 N -0.238 5.238 5 C 0.036 3.964 6 C -0.004 4.004 7 N -0.265 5.265 8 C -0.051 4.051 9 C -0.072 4.072 10 N -0.268 5.268 11 C 0.046 3.954 12 C -0.554 4.554 13 H 0.059 0.941 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.770 3.230 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.180 1.180 20 C -0.058 4.058 21 C -0.056 4.056 22 N -0.245 5.245 23 C -0.033 4.033 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.210 0.790 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.002 0.998 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -24.340 2.411 -13.954 28.159 hybrid contribution -0.498 -0.044 0.944 1.068 sum -24.838 2.367 -13.010 28.139 Atomic orbital electron populations 1.20734 0.86352 1.04726 1.03985 1.22092 1.00939 0.94708 1.01133 1.23749 0.88918 1.00052 0.90727 1.68216 1.11395 1.30634 1.13524 1.22878 0.97427 0.83864 0.92201 1.20718 0.86376 1.03355 0.89916 1.62081 1.14658 1.35014 1.14777 1.21998 1.00045 0.90077 0.93029 1.22182 0.87890 1.00374 0.96753 1.62046 1.12584 1.34911 1.17242 1.19916 0.94511 0.94822 0.86180 1.21218 0.90782 1.49999 0.93412 0.94106 1.25812 0.95606 0.94319 1.03020 1.70039 1.08010 1.52472 1.28140 0.85725 0.79187 0.79299 0.78784 1.18838 1.20511 1.18017 1.21963 1.00199 0.89760 0.93884 1.22116 0.85943 1.01835 0.95671 1.68259 1.11565 1.30553 1.14161 1.23736 0.88862 1.00035 0.90713 0.89232 0.89736 0.89792 0.79028 0.87400 0.91857 0.94259 0.90307 0.90225 0.95834 0.99807 0.95370 0.92353 0.95873 0.91486 0.88193 0.94058 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.06 71.24 0.72 0.18 16 2 C -0.18 -2.52 5.91 -19.69 -0.12 -2.63 16 3 C 0.13 2.26 11.01 84.70 0.93 3.19 16 4 N -0.52 -12.95 10.34 -187.85 -1.94 -14.89 16 5 C 0.30 7.87 6.42 138.75 0.89 8.76 16 6 C 0.13 3.25 5.40 85.55 0.46 3.71 16 7 N -0.54 -16.59 4.70 -900.24 -4.23 -20.83 16 8 C 0.08 2.45 5.38 86.31 0.46 2.92 16 9 C 0.06 2.08 5.61 86.31 0.48 2.56 16 10 N -0.54 -24.01 4.70 -900.26 -4.23 -28.24 16 11 C 0.17 8.70 3.79 85.56 0.32 9.02 16 12 C -0.52 -30.58 9.03 25.60 0.23 -30.35 16 13 H 0.04 2.68 7.38 -2.91 -0.02 2.65 16 14 C 0.01 0.59 5.47 84.65 0.46 1.05 16 15 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 16 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 20 C 0.07 2.88 5.43 86.31 0.47 3.34 16 21 C 0.07 2.32 5.61 86.31 0.48 2.80 16 22 N -0.53 -12.73 9.19 -187.84 -1.73 -14.45 16 23 C 0.13 2.22 11.01 84.70 0.93 3.15 16 24 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.08 0.30 8.10 -2.38 -0.02 0.28 16 26 H 0.08 0.31 8.10 -2.39 -0.02 0.29 16 27 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.11 2.53 8.03 -2.39 -0.02 2.51 16 29 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.40 6.40 -2.39 -0.02 2.39 16 32 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H -0.02 -0.80 7.18 -2.39 -0.02 -0.82 16 35 H 0.03 1.39 7.45 -2.39 -0.02 1.37 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 3.06 6.79 -2.39 -0.02 3.05 16 39 H 0.10 2.73 8.07 -2.39 -0.02 2.71 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -73.24 330.04 -2.26 -75.50 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.95 Total: 7.82 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.74 Total: 7.71 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -11.83 Total: -137.96 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -73.24 -2.26 -75.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.201 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds