Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31794 * 119.12655 * 2 1 4 4 C 1.32329 * 120.82360 * 180.02562 * 3 2 1 5 5 C 1.38605 * 119.10236 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.79726 * 179.72940 * 5 4 3 7 7 N 1.46899 * 109.47323 * 90.00068 * 6 5 4 8 8 C 1.46959 * 110.99907 * 293.79475 * 7 6 5 9 9 C 1.53052 * 109.36536 * 176.81484 * 8 7 6 10 10 N 1.46959 * 109.36414 * 58.40048 * 9 8 7 11 11 C 1.46897 * 110.99571 * 176.81180 * 10 9 8 12 12 C 1.50696 * 109.47310 * 293.79874 * 11 10 9 13 13 H 1.08000 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00123 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99842 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00061 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47176 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47130 * 120.00144 * 16 14 12 19 19 H 1.48509 * 109.46810 * 239.99983 * 16 14 12 20 20 C 1.46959 * 110.88073 * 300.68052 * 10 9 8 21 21 C 1.46959 * 110.99812 * 169.99682 * 7 6 5 22 22 C 1.38599 * 118.39809 * 359.97438 * 5 4 3 23 23 N 1.31798 * 119.12221 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47184 * 89.99351 * 1 2 3 25 25 H 1.09007 * 109.47042 * 209.99692 * 1 2 3 26 26 H 1.09004 * 109.46890 * 329.99125 * 1 2 3 27 27 H 1.07999 * 120.45000 * 179.97438 * 4 3 2 28 28 H 1.09007 * 109.46577 * 209.99738 * 6 5 4 29 29 H 1.08999 * 109.47104 * 329.99521 * 6 5 4 30 30 H 1.09002 * 109.48484 * 296.78280 * 8 7 6 31 31 H 1.08999 * 109.48669 * 56.84675 * 8 7 6 32 32 H 1.08997 * 109.48548 * 298.43472 * 9 8 7 33 33 H 1.08997 * 109.48514 * 178.36853 * 9 8 7 34 34 H 1.09002 * 109.47427 * 53.80293 * 11 10 9 35 35 H 1.09002 * 109.46970 * 173.79829 * 11 10 9 36 36 H 0.97000 * 119.99907 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.48825 * 299.35565 * 20 10 9 38 38 H 1.08994 * 109.50576 * 179.30020 * 20 10 9 39 39 H 1.09002 * 109.49063 * 303.15386 * 21 7 6 40 40 H 1.08997 * 109.48964 * 63.22178 * 21 7 6 41 41 H 1.07998 * 120.44339 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 5.6878 0.0000 -0.0083 7 7 6.1837 0.0024 1.3744 8 6 5.8404 1.2589 2.0548 9 6 6.3033 1.1899 3.5120 10 7 7.7529 0.9517 3.5521 11 6 8.2487 0.9542 4.9348 12 6 8.0993 2.3351 5.5196 13 1 7.6778 3.1311 4.9237 14 6 8.5008 2.5822 6.8152 15 7 9.0146 1.6130 7.5407 16 14 8.3150 4.2937 7.5403 17 1 7.7151 5.1982 6.5268 18 1 7.4333 4.2326 8.7337 19 1 9.6494 4.8109 7.9367 20 6 8.0962 -0.3048 2.8717 21 6 7.6333 -0.2358 1.4145 22 6 3.4711 -1.1906 -0.0015 23 7 2.1484 -1.1514 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 3.9907 2.1373 -0.0009 28 1 6.0488 -0.8910 -0.5222 29 1 6.0488 0.8890 -0.5254 30 1 6.3366 2.0906 1.5546 31 1 4.7609 1.4066 2.0228 32 1 5.7867 0.3752 4.0194 33 1 6.0756 2.1319 4.0108 34 1 7.6732 0.2440 5.5285 35 1 9.3003 0.6675 4.9442 36 1 9.2974 1.7869 8.4521 37 1 7.6000 -1.1365 3.3718 38 1 9.1756 -0.4529 2.9037 39 1 7.8610 -1.1778 0.9156 40 1 8.1499 0.5789 0.9071 41 1 3.9906 -2.1374 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 58.752253 kcal Electronic energy + Delta-G solvation = -21163.880336 eV Core-core repulsion = 18078.821096 eV Total energy + Delta-G solvation = -3085.059240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26194 -38.81011 -35.67774 -33.83912 -33.45078 -32.33257 -30.51420 -29.83794 -27.75391 -25.68156 -24.84865 -23.81520 -23.06785 -21.82226 -21.30058 -19.25547 -17.81535 -16.85095 -16.34576 -16.11459 -15.36456 -15.07816 -14.66996 -14.53760 -14.23506 -13.81575 -13.73540 -13.39881 -13.36749 -13.09185 -12.74813 -12.58762 -12.20708 -12.03803 -11.80266 -11.23609 -11.06642 -10.93126 -10.91230 -10.77673 -10.64332 -10.42040 -10.31783 -9.76543 -9.41651 -9.33949 -9.18139 -8.45923 -8.26005 -7.26831 -6.04320 -4.05831 0.71545 0.96378 3.29872 3.37306 3.41879 3.51210 3.80968 4.00770 4.10126 4.41031 4.48117 4.57253 4.69448 4.90834 5.07976 5.22334 5.27143 5.31492 5.31672 5.36222 5.44948 5.48997 5.68595 5.70485 5.75655 5.81591 5.84487 5.99144 6.12952 6.27806 6.38353 6.53568 6.64305 6.83144 7.08023 7.09976 7.30774 7.34217 7.78117 7.95368 8.06298 8.17518 8.52628 9.01871 9.58598 11.06613 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.003759 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.396061 B = 7447.426342 C = 8188.747602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.308 3.692 3 N -0.519 5.519 4 C 0.157 3.843 5 C -0.183 4.183 6 C 0.102 3.898 7 N -0.536 5.536 8 C 0.055 3.945 9 C 0.069 3.931 10 N -0.538 5.538 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.056 3.944 21 C 0.062 3.938 22 C 0.169 3.831 23 N -0.521 5.521 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.087 0.913 34 H -0.009 1.009 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -4.651 -17.313 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 N -0.233 5.233 4 C -0.009 4.009 5 C -0.188 4.188 6 C -0.027 4.027 7 N -0.261 5.261 8 C -0.072 4.072 9 C -0.060 4.060 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.073 4.073 21 C -0.065 4.065 22 C 0.003 3.997 23 N -0.235 5.235 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.182 0.818 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.009 0.991 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.601 -4.685 -17.122 21.206 hybrid contribution 1.048 0.850 0.620 1.485 sum -10.553 -3.834 -16.502 19.960 Atomic orbital electron populations 1.20545 0.85880 1.04177 1.03649 1.23252 0.98205 0.83615 0.90817 1.68270 1.09933 1.30514 1.14595 1.23177 0.89504 0.98353 0.89902 1.21554 0.98400 0.95554 1.03262 1.20848 0.88837 1.02115 0.90903 1.62215 1.14668 1.35747 1.13471 1.22320 0.99438 0.89487 0.96001 1.21965 0.89115 1.01681 0.93253 1.62297 1.12180 1.31150 1.20724 1.19704 0.95235 0.97085 0.81131 1.21186 1.40847 0.95407 0.97159 0.91884 1.24996 0.95362 0.97211 0.97068 1.69970 1.42481 1.31855 1.09466 0.86452 0.77745 0.84299 0.78992 1.19662 1.21090 1.20998 1.22068 0.99971 0.92477 0.92808 1.22177 0.86193 1.00224 0.97946 1.23106 0.89158 0.98359 0.89115 1.68282 1.10098 1.30450 1.14656 0.89821 0.89685 0.89661 0.81787 0.89510 0.93396 0.94020 0.91551 0.95431 0.89513 0.99080 0.95180 0.92963 0.95113 0.90850 0.90963 0.94031 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.32 36.00 0.37 -0.34 16 2 C 0.31 3.72 7.64 -157.19 -1.20 2.52 16 3 N -0.52 -6.60 10.33 -10.73 -0.11 -6.71 16 4 C 0.16 1.81 9.27 -17.20 -0.16 1.65 16 5 C -0.18 -2.02 4.91 -104.35 -0.51 -2.53 16 6 C 0.10 1.05 5.16 -4.98 -0.03 1.03 16 7 N -0.54 -7.33 4.70 -235.90 -1.11 -8.43 16 8 C 0.06 0.85 5.29 -3.76 -0.02 0.83 16 9 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 10 N -0.54 -11.54 4.70 -235.91 -1.11 -12.65 16 11 C 0.19 5.05 4.72 -4.98 -0.02 5.02 16 12 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 13 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.06 0.99 5.61 -3.76 -0.02 0.97 16 21 C 0.06 0.87 5.61 -3.77 -0.02 0.84 16 22 C 0.17 1.89 11.01 -17.20 -0.19 1.70 16 23 N -0.52 -6.50 10.33 -10.73 -0.11 -6.61 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.17 1.60 8.02 -52.49 -0.42 1.18 16 28 H 0.09 0.74 7.99 -51.92 -0.41 0.33 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.05 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.97 5.97 -51.93 -0.31 0.66 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.07 0.82 8.07 -51.93 -0.42 0.41 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.78 332.74 -10.41 -42.19 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.49 Total: -3.39 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.21 Total: -0.02 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.70 Total: -60.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.78 -10.41 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.938 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds