Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31794 * 119.12655 * 2 1 4 4 C 1.32329 * 120.82360 * 180.02562 * 3 2 1 5 5 C 1.38605 * 119.10236 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.79726 * 179.72940 * 5 4 3 7 7 N 1.46899 * 109.47323 * 90.00068 * 6 5 4 8 8 C 1.46959 * 110.99907 * 293.79475 * 7 6 5 9 9 C 1.53052 * 109.36536 * 176.81484 * 8 7 6 10 10 N 1.46959 * 109.36414 * 58.40048 * 9 8 7 11 11 C 1.46897 * 110.99571 * 176.81180 * 10 9 8 12 12 C 1.50696 * 109.47310 * 293.79874 * 11 10 9 13 13 H 1.08000 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00123 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99842 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00061 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47176 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47130 * 120.00144 * 16 14 12 19 19 H 1.48509 * 109.46810 * 239.99983 * 16 14 12 20 20 C 1.46959 * 110.88073 * 300.68052 * 10 9 8 21 21 C 1.46959 * 110.99812 * 169.99682 * 7 6 5 22 22 C 1.38599 * 118.39809 * 359.97438 * 5 4 3 23 23 N 1.31798 * 119.12221 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47184 * 89.99351 * 1 2 3 25 25 H 1.09007 * 109.47042 * 209.99692 * 1 2 3 26 26 H 1.09004 * 109.46890 * 329.99125 * 1 2 3 27 27 H 1.07999 * 120.45000 * 179.97438 * 4 3 2 28 28 H 1.09007 * 109.46577 * 209.99738 * 6 5 4 29 29 H 1.08999 * 109.47104 * 329.99521 * 6 5 4 30 30 H 1.09002 * 109.48484 * 296.78280 * 8 7 6 31 31 H 1.08999 * 109.48669 * 56.84675 * 8 7 6 32 32 H 1.08997 * 109.48548 * 298.43472 * 9 8 7 33 33 H 1.08997 * 109.48514 * 178.36853 * 9 8 7 34 34 H 1.09002 * 109.47427 * 53.80293 * 11 10 9 35 35 H 1.09002 * 109.46970 * 173.79829 * 11 10 9 36 36 H 0.97000 * 119.99907 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.48825 * 299.35565 * 20 10 9 38 38 H 1.08994 * 109.50576 * 179.30020 * 20 10 9 39 39 H 1.09002 * 109.49063 * 303.15386 * 21 7 6 40 40 H 1.08997 * 109.48964 * 63.22178 * 21 7 6 41 41 H 1.07998 * 120.44339 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 5.6878 0.0000 -0.0083 7 7 6.1837 0.0024 1.3744 8 6 5.8404 1.2589 2.0548 9 6 6.3033 1.1899 3.5120 10 7 7.7529 0.9517 3.5521 11 6 8.2487 0.9542 4.9348 12 6 8.0993 2.3351 5.5196 13 1 7.6778 3.1311 4.9237 14 6 8.5008 2.5822 6.8152 15 7 9.0146 1.6130 7.5407 16 14 8.3150 4.2937 7.5403 17 1 7.7151 5.1982 6.5268 18 1 7.4333 4.2326 8.7337 19 1 9.6494 4.8109 7.9367 20 6 8.0962 -0.3048 2.8717 21 6 7.6333 -0.2358 1.4145 22 6 3.4711 -1.1906 -0.0015 23 7 2.1484 -1.1514 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 3.9907 2.1373 -0.0009 28 1 6.0488 -0.8910 -0.5222 29 1 6.0488 0.8890 -0.5254 30 1 6.3366 2.0906 1.5546 31 1 4.7609 1.4066 2.0228 32 1 5.7867 0.3752 4.0194 33 1 6.0756 2.1319 4.0108 34 1 7.6732 0.2440 5.5285 35 1 9.3003 0.6675 4.9442 36 1 9.2974 1.7869 8.4521 37 1 7.6000 -1.1365 3.3718 38 1 9.1756 -0.4529 2.9037 39 1 7.8610 -1.1778 0.9156 40 1 8.1499 0.5789 0.9071 41 1 3.9906 -2.1374 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 35.819612 kcal Electronic energy + Delta-G solvation = -21164.874770 eV Core-core repulsion = 18078.821096 eV Total energy + Delta-G solvation = -3086.053674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11253 -40.12748 -37.06475 -34.92750 -34.70177 -33.93209 -31.86152 -30.92609 -29.29098 -27.13594 -25.74136 -25.11647 -24.37474 -23.32084 -22.51171 -20.65729 -18.69094 -18.50744 -17.64766 -17.39044 -16.54411 -16.32172 -15.97735 -15.85067 -15.71541 -15.32932 -14.93755 -14.54054 -14.50827 -14.13916 -13.93174 -13.50993 -13.45965 -13.24459 -13.11945 -12.90340 -12.72091 -12.45046 -12.31646 -12.17121 -12.02751 -11.82686 -11.78267 -11.44299 -11.19394 -10.64498 -10.25679 -10.20601 -9.34296 -9.05528 -8.22838 -6.33261 -0.13231 0.11741 1.39845 1.40069 1.53863 2.38591 2.61935 3.05245 3.08477 3.09807 3.21618 3.28155 3.68839 3.72940 3.88759 3.97645 4.19468 4.26344 4.35934 4.38567 4.47657 4.57439 4.65410 4.69750 4.71452 4.75719 4.85616 4.95407 5.00534 5.02040 5.04694 5.06548 5.19731 5.26484 5.48949 5.61947 5.94167 5.99085 6.05520 6.05810 6.31178 6.60750 6.82877 7.10309 7.36728 8.88681 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.003759 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.396061 B = 7447.426342 C = 8188.747602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.294 3.706 3 N -0.540 5.540 4 C 0.148 3.852 5 C -0.185 4.185 6 C 0.108 3.892 7 N -0.546 5.546 8 C 0.072 3.928 9 C 0.070 3.930 10 N -0.542 5.542 11 C 0.209 3.791 12 C -0.523 4.523 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.051 3.949 21 C 0.073 3.927 22 C 0.163 3.837 23 N -0.539 5.539 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.007 0.993 33 H 0.065 0.935 34 H -0.044 1.044 35 H 0.006 0.994 36 H 0.265 0.735 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 -4.118 -19.169 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 N -0.254 5.254 4 C -0.018 4.018 5 C -0.189 4.189 6 C -0.020 4.020 7 N -0.271 5.271 8 C -0.057 4.057 9 C -0.058 4.058 10 N -0.267 5.267 11 C 0.082 3.918 12 C -0.561 4.561 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.202 1.202 20 C -0.077 4.077 21 C -0.054 4.054 22 C -0.003 4.003 23 N -0.254 5.254 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.196 0.804 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.026 0.974 33 H 0.083 0.917 34 H -0.026 1.026 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.041 -4.159 -19.012 22.886 hybrid contribution 1.169 0.608 1.179 1.769 sum -10.872 -3.551 -17.833 21.185 Atomic orbital electron populations 1.20645 0.83991 1.04660 1.04785 1.23856 0.99605 0.83496 0.90336 1.68319 1.10647 1.30944 1.15522 1.23517 0.89464 0.99334 0.89506 1.21610 0.98763 0.95269 1.03302 1.20914 0.88103 1.04158 0.88800 1.62144 1.14595 1.34525 1.15858 1.22068 0.99820 0.90791 0.92981 1.21930 0.87847 0.99666 0.96383 1.62235 1.13270 1.33486 1.17713 1.19349 0.93341 0.95531 0.83564 1.21482 1.40867 0.96077 0.97714 0.91876 1.25940 0.94768 1.01570 0.97469 1.70097 1.43295 1.34218 1.09942 0.85321 0.77983 0.79046 0.78196 1.18615 1.20501 1.20230 1.22214 1.00161 0.90189 0.95186 1.22105 0.86254 1.02321 0.94739 1.23545 0.89037 0.99445 0.88292 1.68347 1.10859 1.30702 1.15477 0.88265 0.89086 0.89232 0.80406 0.86817 0.91943 0.93448 0.90600 0.97442 0.91691 1.02595 0.97603 0.92655 0.96358 0.90783 0.87396 0.93535 0.79421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.32 71.23 0.74 -0.57 16 2 C 0.29 6.75 7.64 138.75 1.06 7.81 16 3 N -0.54 -13.04 10.33 -187.85 -1.94 -14.98 16 4 C 0.15 3.12 9.27 84.71 0.79 3.91 16 5 C -0.18 -3.60 4.91 -19.69 -0.10 -3.69 16 6 C 0.11 1.83 5.16 85.56 0.44 2.27 16 7 N -0.55 -13.46 4.70 -900.26 -4.23 -17.69 16 8 C 0.07 2.09 5.29 86.31 0.46 2.55 16 9 C 0.07 2.81 5.43 86.31 0.47 3.28 16 10 N -0.54 -23.67 4.70 -900.29 -4.23 -27.90 16 11 C 0.21 11.37 4.72 85.56 0.40 11.77 16 12 C -0.52 -30.03 8.47 25.60 0.22 -29.82 16 13 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 16 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.05 1.79 5.61 86.31 0.48 2.28 16 21 C 0.07 1.83 5.61 86.31 0.48 2.31 16 22 C 0.16 3.28 11.01 84.70 0.93 4.22 16 23 N -0.54 -12.67 10.33 -187.85 -1.94 -14.61 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.18 3.07 8.02 -2.91 -0.02 3.05 16 28 H 0.11 1.38 7.99 -2.38 -0.02 1.36 16 29 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.09 5.97 -2.39 -0.01 2.08 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 2.83 6.79 -2.39 -0.02 2.81 16 34 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 35 H 0.01 0.34 8.03 -2.39 -0.02 0.32 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 39 H 0.11 1.99 8.07 -2.39 -0.02 1.97 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.33 332.74 -2.20 -72.54 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.00 Total: 5.91 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.83 Total: 6.81 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -12.06 Total: -131.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.33 -2.20 -72.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.355 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds