Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46861 * 2 1 4 4 C 1.50703 * 109.47499 * 240.00047 * 2 1 3 5 5 C 1.38387 * 120.00418 * 85.97949 * 4 2 1 6 6 N 1.32125 * 119.99703 * 179.76931 * 5 4 2 7 7 C 1.32148 * 120.00184 * 0.51404 * 6 5 4 8 8 C 1.38346 * 120.00251 * 359.48513 * 7 6 5 9 9 N 1.32125 * 119.99799 * 266.00849 * 4 2 1 10 10 N 1.46905 * 109.47180 * 119.99767 * 2 1 3 11 11 C 1.46951 * 110.99586 * 308.14406 * 10 2 1 12 12 C 1.53056 * 109.35891 * 176.81068 * 11 10 2 13 13 N 1.46956 * 109.36447 * 58.40478 * 12 11 10 14 14 C 1.46903 * 110.99647 * 176.81010 * 13 12 11 15 15 C 1.50699 * 109.47366 * 59.51691 * 14 13 12 16 16 H 1.08004 * 119.99786 * 355.28751 * 15 14 13 17 17 C 1.37873 * 120.00112 * 175.29051 * 15 14 13 18 18 N 1.31512 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47293 * 60.00201 * 19 17 15 21 21 H 1.48500 * 109.46880 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47226 * 299.99681 * 19 17 15 23 23 C 1.46956 * 110.87534 * 300.67410 * 13 12 11 24 24 C 1.46957 * 110.99847 * 184.34180 * 10 2 1 25 25 H 1.08993 * 109.47478 * 300.00024 * 1 2 3 26 26 H 1.09004 * 109.47072 * 60.00406 * 1 2 3 27 27 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99659 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.99998 * 179.77051 * 7 6 5 30 30 H 1.07992 * 120.00178 * 180.27919 * 8 7 6 31 31 H 1.08996 * 109.49148 * 296.77258 * 11 10 2 32 32 H 1.08999 * 109.49213 * 56.84316 * 11 10 2 33 33 H 1.08997 * 109.48739 * 298.42878 * 12 11 10 34 34 H 1.09011 * 109.48544 * 178.36986 * 12 11 10 35 35 H 1.08999 * 109.46728 * 179.51376 * 14 13 12 36 36 H 1.08996 * 109.46976 * 299.51182 * 14 13 12 37 37 H 0.96999 * 120.00225 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.49196 * 299.35072 * 23 13 12 39 39 H 1.08999 * 109.48714 * 179.29174 * 23 13 12 40 40 H 1.08994 * 109.49156 * 303.15702 * 24 10 2 41 41 H 1.09002 * 109.48507 * 63.20137 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1839 -0.0153 -2.4175 6 7 2.6287 -0.6372 -3.4950 7 6 2.9193 -1.9252 -3.4419 8 6 2.7679 -2.6202 -2.2552 9 7 2.3277 -1.9971 -1.1761 10 7 2.0197 -0.6925 1.1995 11 6 1.3963 -0.1474 2.4135 12 6 1.8710 -0.9459 3.6299 13 7 3.3363 -0.8761 3.7170 14 6 3.8259 -1.5686 4.9165 15 6 3.4033 -3.0144 4.8696 16 1 2.7648 -3.3647 4.0721 17 6 3.8316 -3.8898 5.8449 18 7 4.6094 -3.4632 6.8158 19 14 3.3071 -5.6817 5.7871 20 1 3.7810 -6.2957 4.5208 21 1 3.8978 -6.4077 6.9400 22 1 1.8261 -5.7664 5.8545 23 6 3.9596 -1.4212 2.5029 24 6 3.4850 -0.6227 1.2865 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9424 1.0364 -2.4619 29 1 3.2794 -2.4344 -4.3236 30 1 3.0097 -3.6718 -2.2107 31 1 1.6816 0.8980 2.5309 32 1 0.3120 -0.2217 2.3303 33 1 1.5619 -1.9859 3.5254 34 1 1.4324 -0.5251 4.5348 35 1 4.9137 -1.5091 4.9517 36 1 3.4072 -1.0962 5.8050 37 1 4.9110 -4.0792 7.5017 38 1 3.6744 -2.4666 2.3856 39 1 5.0439 -1.3469 2.5861 40 1 3.9234 -1.0435 0.3817 41 1 3.7940 0.4174 1.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613449965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = 69.649165 kcal Electronic energy + Delta-G solvation = -21809.593705 eV Core-core repulsion = 18725.006991 eV Total energy + Delta-G solvation = -3084.586714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25724 -38.81978 -35.98447 -34.11918 -32.90941 -31.81258 -30.67716 -29.60467 -27.22768 -25.35826 -24.78251 -24.26560 -22.61444 -21.85977 -20.69150 -19.07024 -17.66893 -17.08286 -16.34944 -16.26243 -15.59470 -15.03302 -14.61384 -14.43649 -14.18705 -14.11397 -13.83302 -13.25119 -13.14191 -12.82666 -12.25379 -12.22745 -11.92931 -11.57204 -11.53927 -11.34327 -11.15035 -11.00461 -10.82896 -10.61396 -10.48897 -10.26660 -9.98944 -9.79885 -9.48977 -9.33252 -9.03411 -8.38467 -8.00036 -7.11439 -5.98006 -4.06604 0.64895 1.08419 3.32810 3.36975 3.40628 3.59536 3.91648 3.92017 4.16572 4.45266 4.49267 4.61458 4.98965 5.05931 5.15170 5.19920 5.24112 5.31795 5.32438 5.39928 5.61605 5.64871 5.74588 5.86219 5.95742 6.01461 6.07340 6.21562 6.24085 6.38118 6.66858 6.85064 6.93900 7.15577 7.25978 7.34969 7.45826 7.56979 7.77056 7.94986 8.11071 8.32478 8.36300 9.04185 9.60149 11.07069 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.004586 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.847158 B = 6103.410586 C = 6687.758241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.132 3.868 3 H 0.058 0.942 4 C 0.095 3.905 5 C 0.046 3.954 6 N -0.440 5.440 7 C 0.035 3.965 8 C 0.051 3.949 9 N -0.399 5.399 10 N -0.514 5.514 11 C 0.055 3.945 12 C 0.065 3.935 13 N -0.544 5.544 14 C 0.187 3.813 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.069 3.931 24 C 0.067 3.933 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 6.691 -17.749 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.021 3.979 3 H 0.076 0.924 4 C -0.046 4.046 5 C -0.114 4.114 6 N -0.154 5.154 7 C -0.125 4.125 8 C -0.109 4.109 9 N -0.113 5.113 10 N -0.239 5.239 11 C -0.072 4.072 12 C -0.064 4.064 13 N -0.269 5.269 14 C 0.062 3.938 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.060 4.060 24 C -0.062 4.062 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.182 0.818 29 H 0.183 0.817 30 H 0.186 0.814 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.011 6.638 -17.567 19.718 hybrid contribution -0.110 -1.223 -0.009 1.227 sum -6.121 5.415 -17.577 19.384 Atomic orbital electron populations 1.21913 0.92757 1.03327 1.02147 1.20444 0.95862 0.94062 0.87506 0.92441 1.22265 0.95259 0.91314 0.95741 1.23495 0.97220 1.01507 0.89219 1.68427 1.07813 1.09721 1.29457 1.23740 0.98063 0.91238 0.99412 1.23945 0.95741 1.01928 0.89261 1.68515 1.05711 1.08557 1.28522 1.62048 1.06661 1.54583 1.00598 1.22353 0.98449 0.96765 0.89679 1.21921 0.90106 0.99214 0.95165 1.62702 1.04730 1.55616 1.03804 1.19719 0.96111 0.91303 0.86697 1.21752 1.31095 0.95387 1.10326 0.92262 1.24954 0.94862 0.98599 0.95351 1.69937 1.34532 1.35389 1.13373 0.86708 0.78933 0.85238 0.77449 1.20281 1.21310 1.20256 1.21853 0.98050 0.97472 0.88651 1.22159 0.86763 0.98428 0.98804 0.91018 0.92289 0.91279 0.81806 0.81658 0.81449 0.94878 0.90716 0.93204 0.91431 0.94966 0.95458 0.92845 0.93164 0.91730 0.91880 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.67 37.16 0.32 -1.16 16 2 C 0.13 1.61 2.35 -68.86 -0.16 1.45 16 3 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 4 C 0.10 1.19 4.89 -82.41 -0.40 0.78 16 5 C 0.05 0.50 10.90 -17.37 -0.19 0.31 16 6 N -0.44 -5.03 10.50 -13.06 -0.14 -5.17 16 7 C 0.04 0.34 11.22 -17.38 -0.20 0.15 16 8 C 0.05 0.56 11.23 -17.37 -0.19 0.37 16 9 N -0.40 -5.55 8.99 -9.29 -0.08 -5.63 16 10 N -0.51 -8.01 4.21 -227.88 -0.96 -8.97 16 11 C 0.06 0.86 5.11 -3.77 -0.02 0.84 16 12 C 0.06 1.28 5.24 -3.76 -0.02 1.26 16 13 N -0.54 -11.91 4.92 -235.91 -1.16 -13.07 16 14 C 0.19 4.89 5.14 -4.97 -0.03 4.87 16 15 C -0.55 -15.21 7.67 -34.44 -0.26 -15.48 16 16 H 0.06 1.66 5.81 -52.48 -0.31 1.36 16 17 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.07 1.40 5.31 -3.77 -0.02 1.38 16 24 C 0.07 1.12 5.32 -3.77 -0.02 1.10 16 25 H 0.07 0.69 6.25 -51.93 -0.32 0.36 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.01 6.00 -51.93 -0.31 0.70 16 33 H 0.05 1.11 6.47 -51.93 -0.34 0.77 16 34 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.03 0.91 8.12 -51.93 -0.42 0.48 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 1.16 6.93 -51.93 -0.36 0.80 16 39 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 40 H 0.06 1.05 6.53 -51.93 -0.34 0.71 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -31.70 324.96 -9.20 -40.90 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.18 Total: -1.54 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.29 Total: -2.38 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -1.60 Total: -58.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.70 -9.20 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613449965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.547 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds