Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46861 * 2 1 4 4 C 1.50703 * 109.47499 * 240.00047 * 2 1 3 5 5 C 1.38387 * 120.00418 * 85.97949 * 4 2 1 6 6 N 1.32125 * 119.99703 * 179.76931 * 5 4 2 7 7 C 1.32148 * 120.00184 * 0.51404 * 6 5 4 8 8 C 1.38346 * 120.00251 * 359.48513 * 7 6 5 9 9 N 1.32125 * 119.99799 * 266.00849 * 4 2 1 10 10 N 1.46905 * 109.47180 * 119.99767 * 2 1 3 11 11 C 1.46951 * 110.99586 * 308.14406 * 10 2 1 12 12 C 1.53056 * 109.35891 * 176.81068 * 11 10 2 13 13 N 1.46956 * 109.36447 * 58.40478 * 12 11 10 14 14 C 1.46903 * 110.99647 * 176.81010 * 13 12 11 15 15 C 1.50699 * 109.47366 * 59.51691 * 14 13 12 16 16 H 1.08004 * 119.99786 * 355.28751 * 15 14 13 17 17 C 1.37873 * 120.00112 * 175.29051 * 15 14 13 18 18 N 1.31512 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47293 * 60.00201 * 19 17 15 21 21 H 1.48500 * 109.46880 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47226 * 299.99681 * 19 17 15 23 23 C 1.46956 * 110.87534 * 300.67410 * 13 12 11 24 24 C 1.46957 * 110.99847 * 184.34180 * 10 2 1 25 25 H 1.08993 * 109.47478 * 300.00024 * 1 2 3 26 26 H 1.09004 * 109.47072 * 60.00406 * 1 2 3 27 27 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99659 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.99998 * 179.77051 * 7 6 5 30 30 H 1.07992 * 120.00178 * 180.27919 * 8 7 6 31 31 H 1.08996 * 109.49148 * 296.77258 * 11 10 2 32 32 H 1.08999 * 109.49213 * 56.84316 * 11 10 2 33 33 H 1.08997 * 109.48739 * 298.42878 * 12 11 10 34 34 H 1.09011 * 109.48544 * 178.36986 * 12 11 10 35 35 H 1.08999 * 109.46728 * 179.51376 * 14 13 12 36 36 H 1.08996 * 109.46976 * 299.51182 * 14 13 12 37 37 H 0.96999 * 120.00225 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.49196 * 299.35072 * 23 13 12 39 39 H 1.08999 * 109.48714 * 179.29174 * 23 13 12 40 40 H 1.08994 * 109.49156 * 303.15702 * 24 10 2 41 41 H 1.09002 * 109.48507 * 63.20137 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1839 -0.0153 -2.4175 6 7 2.6287 -0.6372 -3.4950 7 6 2.9193 -1.9252 -3.4419 8 6 2.7679 -2.6202 -2.2552 9 7 2.3277 -1.9971 -1.1761 10 7 2.0197 -0.6925 1.1995 11 6 1.3963 -0.1474 2.4135 12 6 1.8710 -0.9459 3.6299 13 7 3.3363 -0.8761 3.7170 14 6 3.8259 -1.5686 4.9165 15 6 3.4033 -3.0144 4.8696 16 1 2.7648 -3.3647 4.0721 17 6 3.8316 -3.8898 5.8449 18 7 4.6094 -3.4632 6.8158 19 14 3.3071 -5.6817 5.7871 20 1 3.7810 -6.2957 4.5208 21 1 3.8978 -6.4077 6.9400 22 1 1.8261 -5.7664 5.8545 23 6 3.9596 -1.4212 2.5029 24 6 3.4850 -0.6227 1.2865 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9424 1.0364 -2.4619 29 1 3.2794 -2.4344 -4.3236 30 1 3.0097 -3.6718 -2.2107 31 1 1.6816 0.8980 2.5309 32 1 0.3120 -0.2217 2.3303 33 1 1.5619 -1.9859 3.5254 34 1 1.4324 -0.5251 4.5348 35 1 4.9137 -1.5091 4.9517 36 1 3.4072 -1.0962 5.8050 37 1 4.9110 -4.0792 7.5017 38 1 3.6744 -2.4666 2.3856 39 1 5.0439 -1.3469 2.5861 40 1 3.9234 -1.0435 0.3817 41 1 3.7940 0.4174 1.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613449965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = 45.934566 kcal Electronic energy + Delta-G solvation = -21810.622048 eV Core-core repulsion = 18725.006991 eV Total energy + Delta-G solvation = -3085.615056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10016 -40.19633 -37.42737 -35.12137 -34.64317 -33.20541 -32.03014 -30.73837 -28.98546 -26.76868 -25.91162 -25.33374 -24.00327 -23.60143 -21.83814 -20.63432 -18.67169 -18.33416 -17.86056 -17.30446 -16.90571 -16.38107 -16.05810 -15.82229 -15.52517 -15.38057 -15.20024 -14.83755 -14.38753 -13.93408 -13.77063 -13.53947 -13.30865 -12.94958 -12.82365 -12.66316 -12.44215 -12.33628 -12.31409 -12.23469 -12.05215 -12.00854 -11.80038 -11.56181 -11.29903 -10.60687 -10.14115 -9.87497 -9.21938 -8.99979 -8.15647 -6.34732 -0.13809 0.25327 1.35821 1.37392 1.45842 2.37185 2.74591 2.86442 3.09021 3.12931 3.38115 3.42689 3.66927 3.81044 4.03786 4.14780 4.24183 4.26065 4.42107 4.45734 4.47083 4.52745 4.55718 4.61720 4.71392 4.81218 4.83472 4.98834 5.08676 5.13464 5.23714 5.26790 5.30129 5.34648 5.47752 5.73340 6.02812 6.11410 6.12904 6.28698 6.45130 6.52282 6.85575 6.95353 7.36432 8.86765 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.004586 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.847158 B = 6103.410586 C = 6687.758241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.132 3.868 3 H 0.078 0.922 4 C 0.080 3.920 5 C 0.050 3.950 6 N -0.458 5.458 7 C 0.043 3.957 8 C 0.041 3.959 9 N -0.440 5.440 10 N -0.530 5.530 11 C 0.067 3.933 12 C 0.065 3.935 13 N -0.540 5.540 14 C 0.200 3.800 15 C -0.554 4.554 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.270 1.270 23 C 0.073 3.927 24 C 0.085 3.915 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.192 0.808 29 H 0.199 0.801 30 H 0.186 0.814 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 7.133 -19.855 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 H 0.095 0.905 4 C -0.061 4.061 5 C -0.110 4.110 6 N -0.172 5.172 7 C -0.116 4.116 8 C -0.119 4.119 9 N -0.155 5.155 10 N -0.255 5.255 11 C -0.060 4.060 12 C -0.064 4.064 13 N -0.264 5.264 14 C 0.073 3.927 15 C -0.593 4.593 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.195 1.195 23 C -0.056 4.056 24 C -0.044 4.044 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.208 0.792 29 H 0.215 0.785 30 H 0.202 0.798 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.178 7.096 -19.695 22.131 hybrid contribution 0.264 -1.357 0.590 1.504 sum -6.914 5.739 -19.105 21.113 Atomic orbital electron populations 1.21888 0.91274 1.02544 1.03830 1.20585 0.96984 0.94518 0.85667 0.90473 1.22332 0.96238 0.91163 0.96368 1.23844 0.96199 1.02554 0.88416 1.68516 1.08483 1.10475 1.29733 1.24229 0.96528 0.90832 1.00036 1.24295 0.95618 1.02860 0.89137 1.68428 1.07041 1.09717 1.30311 1.61951 1.05597 1.56130 1.01866 1.22232 0.99742 0.96233 0.87805 1.21970 0.88378 0.98387 0.97636 1.62647 1.06336 1.54545 1.02899 1.19388 0.94252 0.91059 0.87964 1.21920 1.30903 0.96316 1.10128 0.92869 1.25781 0.94820 1.03089 0.94914 1.70052 1.35513 1.37008 1.14064 0.85647 0.78795 0.79809 0.77674 1.19847 1.20430 1.19484 1.21813 0.97623 0.96422 0.89729 1.21877 0.88044 0.97899 0.96564 0.90121 0.89819 0.93227 0.79161 0.78457 0.79756 0.93656 0.88148 0.96118 0.91539 0.97735 0.97608 0.92580 0.96310 0.92620 0.91529 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.67 71.98 0.62 -1.82 16 2 C 0.13 2.89 2.35 44.17 0.10 2.99 16 3 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 4 C 0.08 1.83 4.89 42.55 0.21 2.03 16 5 C 0.05 0.95 10.90 84.68 0.92 1.87 16 6 N -0.46 -9.31 10.50 -195.23 -2.05 -11.36 16 7 C 0.04 0.74 11.22 84.67 0.95 1.69 16 8 C 0.04 0.83 11.23 84.67 0.95 1.78 16 9 N -0.44 -11.76 8.99 -183.29 -1.65 -13.41 16 10 N -0.53 -15.79 4.21 -874.88 -3.69 -19.47 16 11 C 0.07 1.99 5.11 86.31 0.44 2.43 16 12 C 0.06 2.59 5.24 86.31 0.45 3.04 16 13 N -0.54 -24.28 4.92 -900.27 -4.43 -28.71 16 14 C 0.20 10.93 5.14 85.56 0.44 11.37 16 15 C -0.55 -31.82 7.67 25.60 0.20 -31.62 16 16 H 0.05 3.08 5.81 -2.91 -0.02 3.06 16 17 C 0.01 0.77 5.46 84.65 0.46 1.23 16 18 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 19 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 23 C 0.07 3.07 5.31 86.31 0.46 3.53 16 24 C 0.08 2.78 5.32 86.31 0.46 3.24 16 25 H 0.08 1.27 6.25 -2.39 -0.01 1.26 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 2.47 6.00 -2.39 -0.01 2.46 16 33 H 0.02 0.94 6.47 -2.39 -0.02 0.92 16 34 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.00 0.27 8.12 -2.39 -0.02 0.25 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.02 0.90 6.93 -2.39 -0.02 0.88 16 39 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 40 H 0.07 2.16 6.53 -2.39 -0.02 2.15 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.15 324.96 -1.82 -71.97 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.01 Total: 7.89 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.67 Total: 1.77 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -11.53 Total: -128.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.15 -1.82 -71.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613449965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.907 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds