Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46942 * 119.99498 * 2 1 3 5 5 C 1.38381 * 120.00171 * 273.96298 * 4 2 1 6 6 N 1.32134 * 119.99830 * 179.78117 * 5 4 2 7 7 C 1.32153 * 119.99454 * 0.48901 * 6 5 4 8 8 C 1.38342 * 120.00660 * 359.73879 * 7 6 5 9 9 N 1.32127 * 119.99765 * 94.23143 * 4 2 1 10 10 N 1.46899 * 109.47418 * 239.99652 * 2 1 3 11 11 C 1.46956 * 111.00006 * 176.62455 * 10 2 1 12 12 C 1.53046 * 109.38082 * 176.82058 * 11 10 2 13 13 N 1.46961 * 109.36344 * 58.39247 * 12 11 10 14 14 C 1.46896 * 110.99823 * 176.80831 * 13 12 11 15 15 C 1.50698 * 109.47295 * 190.00011 * 14 13 12 16 16 H 1.08008 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00719 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00317 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99411 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47204 * 90.00014 * 19 17 15 21 21 H 1.48498 * 109.47158 * 209.99629 * 19 17 15 22 22 H 1.48500 * 109.47518 * 329.99619 * 19 17 15 23 23 C 1.46952 * 110.87985 * 300.67783 * 13 12 11 24 24 C 1.46949 * 111.01890 * 52.81184 * 10 2 1 25 25 H 1.08996 * 109.47187 * 300.00436 * 1 2 3 26 26 H 1.09003 * 109.46444 * 60.00329 * 1 2 3 27 27 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00583 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.99655 * 179.71626 * 7 6 5 30 30 H 1.08000 * 120.00391 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.48801 * 56.84392 * 11 10 2 32 32 H 1.08994 * 109.48930 * 296.80387 * 11 10 2 33 33 H 1.09000 * 109.48883 * 178.35692 * 12 11 10 34 34 H 1.08995 * 109.49470 * 298.42152 * 12 11 10 35 35 H 1.09007 * 109.47588 * 309.99997 * 14 13 12 36 36 H 1.08999 * 109.47222 * 70.00127 * 14 13 12 37 37 H 0.96996 * 119.99884 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.48793 * 179.28886 * 23 13 12 39 39 H 1.09005 * 109.48623 * 299.35090 * 23 13 12 40 40 H 1.09007 * 109.47331 * 63.19612 * 24 10 2 41 41 H 1.09000 * 109.51092 * 303.16078 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1849 -0.0149 2.4172 6 7 2.6212 -0.6387 3.4972 7 6 2.9210 -1.9246 3.4416 8 6 2.7730 -2.6188 2.2541 9 7 2.3321 -1.9960 1.1751 10 7 2.0198 -0.6926 -1.1994 11 6 3.4866 -0.6426 -1.2743 12 6 3.9604 -1.4405 -2.4913 13 7 3.3544 -0.8803 -3.7073 14 6 3.8445 -1.5725 -4.9067 15 6 3.4002 -0.8229 -6.1362 16 1 2.8121 0.0775 -6.0366 17 6 3.7436 -1.2870 -7.3884 18 7 3.3554 -0.6330 -8.4613 19 14 4.7589 -2.8454 -7.5607 20 1 3.8534 -4.0192 -7.6464 21 1 5.5833 -2.7653 -8.7932 22 1 5.6472 -2.9907 -6.3795 23 6 1.8876 -0.9307 -3.6326 24 6 1.4138 -0.1329 -2.4155 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.9436 1.0369 2.4616 29 1 3.2820 -2.4334 4.3231 30 1 3.0185 -3.6695 2.2086 31 1 3.9119 -1.0743 -0.3683 32 1 3.8107 0.3937 -1.3701 33 1 5.0462 -1.3804 -2.5653 34 1 3.6602 -2.4826 -2.3824 35 1 4.9334 -1.6162 -4.8816 36 1 3.4408 -2.5846 -4.9326 37 1 3.5972 -0.9594 -9.3421 38 1 1.4623 -0.4990 -4.5386 39 1 1.5639 -1.9671 -3.5366 40 1 1.7140 0.9093 -2.5246 41 1 0.3279 -0.1926 -2.3418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613449967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 49.250282 kcal Electronic energy + Delta-G solvation = -21589.509359 eV Core-core repulsion = 18504.038083 eV Total energy + Delta-G solvation = -3085.471276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11352 -40.22327 -37.41722 -35.11366 -34.69533 -33.33096 -32.11811 -30.86352 -29.64524 -26.68754 -25.90201 -25.33558 -24.09620 -23.11600 -21.88840 -20.62758 -18.95693 -18.56842 -17.86163 -17.31070 -16.90933 -16.33483 -16.04431 -15.91002 -15.64838 -15.32394 -15.18108 -15.02943 -14.51547 -14.31340 -13.86479 -13.60999 -13.36601 -13.16865 -12.78344 -12.70760 -12.45055 -12.42399 -12.33111 -12.20006 -12.10657 -11.87072 -11.74833 -11.44538 -11.31477 -10.79360 -10.14997 -9.88891 -9.28302 -9.04518 -8.28881 -6.31966 -0.14320 0.24473 1.34035 1.35247 1.46383 2.33884 2.71665 2.83519 3.03461 3.10132 3.21173 3.42398 3.66229 3.78847 3.96302 4.12149 4.17640 4.22938 4.33962 4.40992 4.45583 4.46827 4.48577 4.60117 4.61543 4.76735 4.80164 4.84296 4.92610 4.95900 5.01281 5.11071 5.17209 5.29348 5.47179 5.52574 5.92353 6.05037 6.10807 6.36507 6.43323 6.63577 6.73428 6.93592 7.31663 8.87521 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.003901 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.563909 B = 7175.498430 C = 7713.913324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 H 0.073 0.927 4 C 0.080 3.920 5 C 0.048 3.952 6 N -0.459 5.459 7 C 0.043 3.957 8 C 0.044 3.956 9 N -0.436 5.436 10 N -0.525 5.525 11 C 0.081 3.919 12 C 0.059 3.941 13 N -0.542 5.542 14 C 0.173 3.827 15 C -0.515 4.515 16 H 0.040 0.960 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.946 3.054 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.252 1.252 23 C 0.070 3.930 24 C 0.067 3.933 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.187 0.813 29 H 0.199 0.801 30 H 0.191 0.809 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.028 0.972 36 H -0.018 1.018 37 H 0.267 0.733 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.037 0.963 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -1.915 25.130 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.022 3.978 3 H 0.091 0.909 4 C -0.060 4.060 5 C -0.111 4.111 6 N -0.173 5.173 7 C -0.117 4.117 8 C -0.116 4.116 9 N -0.151 5.151 10 N -0.250 5.250 11 C -0.048 4.048 12 C -0.070 4.070 13 N -0.267 5.267 14 C 0.046 3.954 15 C -0.553 4.553 16 H 0.059 0.941 17 C -0.187 4.187 18 N -0.587 5.587 19 Si 0.769 3.231 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.176 1.176 23 C -0.058 4.058 24 C -0.061 4.061 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.204 0.796 29 H 0.216 0.784 30 H 0.208 0.792 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.000 1.000 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.996 -1.906 24.953 25.204 hybrid contribution 0.476 -0.642 -0.838 1.158 sum -2.520 -2.548 24.115 24.379 Atomic orbital electron populations 1.21882 0.91364 1.02707 1.03640 1.20562 0.96973 0.94490 0.85777 0.90935 1.22221 0.96373 0.91325 0.96106 1.23800 0.96377 1.02461 0.88484 1.68524 1.08462 1.10649 1.29687 1.24272 0.96356 0.90791 1.00240 1.24343 0.95396 1.02907 0.88974 1.68416 1.07036 1.09368 1.30322 1.62025 1.06129 1.55379 1.01472 1.21898 0.87914 0.98081 0.96866 1.22117 0.98887 0.96327 0.89637 1.62058 1.06892 1.55747 1.02004 1.19912 0.95334 0.91615 0.88587 1.21223 1.33469 1.10401 0.90197 0.94134 1.25802 0.97061 1.00597 0.95286 1.70034 1.48140 1.41898 0.98596 0.85736 0.79435 0.79505 0.78388 1.19406 1.20462 1.17597 1.21957 0.87901 0.98122 0.97822 1.22191 0.99981 0.95991 0.87889 0.89914 0.90574 0.92786 0.79571 0.78444 0.79205 0.90583 0.94943 0.90825 0.95463 0.95404 1.00003 0.92386 0.91950 0.95993 0.94509 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.71 71.98 0.63 -1.78 16 2 C 0.13 2.75 2.34 44.17 0.10 2.86 16 3 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 4 C 0.08 1.67 4.89 42.55 0.21 1.88 16 5 C 0.05 0.86 10.90 84.68 0.92 1.78 16 6 N -0.46 -8.56 10.50 -195.23 -2.05 -10.61 16 7 C 0.04 0.63 11.22 84.67 0.95 1.58 16 8 C 0.04 0.73 11.22 84.67 0.95 1.68 16 9 N -0.44 -10.06 8.90 -183.29 -1.63 -11.69 16 10 N -0.52 -14.58 4.22 -874.88 -3.69 -18.27 16 11 C 0.08 2.40 5.30 86.31 0.46 2.86 16 12 C 0.06 2.10 5.61 86.31 0.48 2.58 16 13 N -0.54 -23.42 4.70 -900.31 -4.23 -27.65 16 14 C 0.17 8.60 3.79 85.56 0.32 8.93 16 15 C -0.51 -30.26 9.03 25.60 0.23 -30.03 16 16 H 0.04 2.64 7.37 -2.91 -0.02 2.61 16 17 C 0.01 0.59 5.47 84.66 0.46 1.05 16 18 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 19 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 23 C 0.07 2.80 5.43 86.31 0.47 3.27 16 24 C 0.07 2.03 5.14 86.31 0.44 2.47 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.26 6.25 -2.39 -0.01 1.25 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.08 2.13 6.43 -2.39 -0.02 2.12 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.03 1.38 7.09 -2.38 -0.02 1.36 16 36 H -0.02 -0.88 7.55 -2.39 -0.02 -0.90 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.06 2.81 6.79 -2.39 -0.02 2.79 16 39 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.10 2.58 6.02 -2.39 -0.01 2.56 16 Total: -1.00 -71.84 324.55 -1.84 -73.68 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.95 Total: 7.90 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.63 Total: -0.86 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -11.31 Total: -127.44 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -71.84 -1.84 -73.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613449967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.931 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds