Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 C 1.50702 * 109.46674 * 239.99890 * 2 1 3 5 5 H 1.08004 * 120.00124 * 239.99523 * 4 2 1 6 6 C 1.37878 * 119.99773 * 60.00367 * 4 2 1 7 7 N 1.31504 * 120.00428 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99736 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47243 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46808 * 119.99704 * 8 6 4 11 11 H 1.48497 * 109.47416 * 239.99745 * 8 6 4 12 12 N 1.46901 * 109.47509 * 120.00021 * 2 1 3 13 13 C 1.46893 * 111.00018 * 274.99846 * 12 2 1 14 14 C 1.50701 * 109.47008 * 179.97438 * 13 12 2 15 15 N 1.30515 * 126.34629 * 84.26424 * 14 13 12 16 16 N 1.28602 * 109.67540 * 179.97438 * 15 14 13 17 17 C 1.30519 * 109.67010 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34593 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.49720 * 8.59705 * 18 17 16 20 20 C 1.53002 * 117.49935 * 299.97430 * 18 17 16 21 21 N 1.35495 * 107.30882 * 359.77480 * 17 16 15 22 22 C 1.46497 * 126.98326 * 180.23043 * 21 17 16 23 23 C 1.53004 * 117.49677 * 313.27827 * 22 21 17 24 24 C 1.53004 * 60.00064 * 252.51270 * 23 22 21 25 25 H 1.09000 * 109.46595 * 299.99805 * 1 2 3 26 26 H 1.08993 * 109.47416 * 59.99966 * 1 2 3 27 27 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00836 * 179.97438 * 7 6 4 29 29 H 1.00911 * 110.99677 * 38.95078 * 12 2 1 30 30 H 1.08998 * 109.47392 * 299.99635 * 13 12 2 31 31 H 1.08999 * 109.47125 * 59.99979 * 13 12 2 32 32 H 1.09002 * 115.54954 * 154.30440 * 18 17 16 33 33 H 1.09000 * 117.49885 * 359.97438 * 19 18 17 34 34 H 1.09001 * 117.49377 * 145.02125 * 19 18 17 35 35 H 1.09001 * 117.50015 * 214.97903 * 20 18 17 36 36 H 1.09002 * 117.49731 * 359.97438 * 20 18 17 37 37 H 1.08997 * 115.55346 * 98.98342 * 22 21 17 38 38 H 1.09000 * 117.49835 * 359.97438 * 23 22 21 39 39 H 1.08993 * 117.50253 * 145.02116 * 23 22 21 40 40 H 1.09001 * 117.49555 * 252.51707 * 24 23 22 41 41 H 1.08991 * 117.50068 * 107.49026 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3222 -1.1196 -4.0080 9 1 3.1470 -2.2865 -3.6039 10 1 1.1674 -1.5866 -4.8165 11 1 3.1470 -0.1859 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2226 2.3468 14 6 2.5876 -0.5219 3.5559 15 7 3.8370 -0.7395 3.8642 16 7 3.9023 -1.4053 4.9625 17 6 2.6974 -1.6422 5.4050 18 6 2.3389 -2.3925 6.6618 19 6 3.4784 -2.7598 7.6146 20 6 2.8040 -3.8459 6.7739 21 7 1.8288 -1.0837 4.5278 22 6 0.3662 -1.0893 4.6113 23 6 -0.3179 -2.4194 4.9335 24 6 -0.4008 -1.8391 3.5202 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7086 1.1614 -3.4843 29 1 1.4495 -1.4980 1.4100 30 1 2.7590 1.0461 2.1181 31 1 1.0872 0.6163 2.5525 32 1 1.3758 -2.1368 7.1035 33 1 4.4873 -2.4591 7.3321 34 1 3.2649 -2.7456 8.6834 35 1 2.1469 -4.5462 7.2897 36 1 3.3688 -4.2594 5.9384 37 1 -0.0854 -0.1811 5.0103 38 1 0.3202 -3.2903 5.0829 39 1 -1.2197 -2.3864 5.5448 40 1 -1.3572 -1.4243 3.2018 41 1 0.1828 -2.3282 2.7403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614116166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = 135.509623 kcal Electronic energy + Delta-G solvation = -21576.583647 eV Core-core repulsion = 18494.852857 eV Total energy + Delta-G solvation = -3081.730790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.97477 -37.81025 -37.35571 -36.13288 -33.00434 -32.54698 -30.68812 -28.31040 -25.34938 -24.92932 -24.25574 -23.43936 -22.67667 -22.45010 -20.38176 -20.14070 -19.88243 -17.62977 -16.48937 -16.22356 -15.89935 -15.02898 -14.93080 -14.63484 -14.34869 -13.97791 -13.52548 -13.16805 -12.57921 -12.52942 -11.95113 -11.82859 -11.72824 -11.62969 -11.46037 -11.16977 -11.08384 -11.00031 -10.96207 -10.80549 -10.75925 -10.56416 -10.21380 -9.98937 -9.96776 -9.91107 -9.07821 -8.67880 -8.39040 -7.36984 -6.01296 -4.04108 1.87522 2.40642 3.03362 3.16166 3.31804 3.39867 3.46316 3.73194 4.06246 4.29330 4.36196 4.42321 4.47905 4.63197 4.68958 4.77865 4.85040 5.16864 5.22166 5.31002 5.35823 5.42845 5.44686 5.57661 5.65245 5.74981 5.78236 5.95126 5.98650 6.04039 6.19369 6.37733 6.57589 6.72652 6.97048 7.03076 7.23376 7.64844 7.83984 8.18197 8.39833 8.51841 9.02339 9.03371 9.61435 11.05893 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.004150 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.368559 B = 6744.905931 C = 7114.460545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.670 5.670 13 C 0.146 3.854 14 C 0.201 3.799 15 N -0.279 5.279 16 N -0.296 5.296 17 C 0.196 3.804 18 C -0.081 4.081 19 C -0.151 4.151 20 C -0.161 4.161 21 N -0.445 5.445 22 C 0.045 3.955 23 C -0.164 4.164 24 C -0.163 4.163 25 H 0.004 0.996 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.322 0.678 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 -5.794 19.303 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.301 5.301 13 C 0.014 3.986 14 C -0.066 4.066 15 N -0.118 5.118 16 N -0.136 5.136 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.189 4.189 20 C -0.199 4.199 21 N -0.136 5.136 22 C -0.059 4.059 23 C -0.202 4.202 24 C -0.200 4.200 25 H 0.023 0.977 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.461 -5.542 18.878 19.976 hybrid contribution -2.195 -0.192 -0.644 2.296 sum -5.656 -5.735 18.233 19.933 Atomic orbital electron populations 1.22441 1.00510 0.99177 1.00617 1.19236 0.89645 0.94668 0.85939 0.94397 1.21163 1.30169 1.12536 0.89377 0.91794 1.24925 0.95275 0.95186 0.99035 1.69872 1.37378 1.23204 1.23329 0.86441 0.78502 0.79740 0.82743 1.19690 1.21249 1.21053 1.60854 1.58320 1.08517 1.02443 1.20277 0.98740 0.94531 0.85006 1.25067 0.87704 1.00227 0.93581 1.74323 1.15647 1.14272 1.07541 1.74204 1.18126 1.14729 1.06537 1.23579 0.86547 1.01562 0.95332 1.20029 1.00336 0.97255 0.92529 1.23013 0.97856 1.01573 0.96449 1.23070 1.03471 0.90146 1.03225 1.45457 1.06738 1.42144 1.19307 1.21961 0.76833 0.98684 1.08472 1.23380 1.02287 0.95128 0.99378 1.23465 1.02150 1.01821 0.92598 0.97660 0.89005 0.95345 0.93083 0.86080 0.88255 0.94376 0.86126 0.87219 0.88064 0.87995 0.88175 0.84589 0.87534 0.86866 0.86574 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 8.94 37.16 0.33 -3.44 16 2 C 0.21 5.17 2.57 -68.86 -0.18 4.99 16 3 H 0.04 1.01 7.80 -51.93 -0.40 0.61 16 4 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.67 -14.21 6.22 -109.23 -0.68 -14.89 16 13 C 0.15 2.69 5.89 -4.98 -0.03 2.66 16 14 C 0.20 3.62 7.54 -154.99 -1.17 2.45 16 15 N -0.28 -5.71 12.21 32.80 0.40 -5.31 16 16 N -0.30 -5.47 11.83 32.80 0.39 -5.09 16 17 C 0.20 2.91 7.44 -154.99 -1.15 1.75 16 18 C -0.08 -0.83 4.85 -91.77 -0.45 -1.27 16 19 C -0.15 -1.37 10.15 -26.73 -0.27 -1.64 16 20 C -0.16 -1.42 10.23 -26.73 -0.27 -1.69 16 21 N -0.45 -6.48 3.03 -103.61 -0.31 -6.79 16 22 C 0.05 0.48 5.99 -67.93 -0.41 0.07 16 23 C -0.16 -1.32 9.26 -26.73 -0.25 -1.56 16 24 C -0.16 -1.67 10.45 -26.73 -0.28 -1.94 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 27 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.32 6.44 7.02 -39.29 -0.28 6.17 16 30 H 0.10 1.91 8.06 -51.93 -0.42 1.49 16 31 H 0.04 0.63 7.09 -51.93 -0.37 0.27 16 32 H 0.12 0.97 7.73 -51.93 -0.40 0.57 16 33 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.11 0.92 7.55 -51.93 -0.39 0.53 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.11 1.38 6.69 -51.93 -0.35 1.03 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -31.73 339.40 -10.23 -41.95 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.23 Total: 5.15 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -4.52 Total: -12.05 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.42 Total: -56.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.73 -10.23 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614116166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.464 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds