Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31857 * 1 3 3 N 1.39528 * 119.99990 * 2 1 4 4 C 1.35816 * 126.10406 * 180.26846 * 3 2 1 5 5 C 1.35332 * 107.61575 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.01472 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47315 * 89.99821 * 6 5 4 8 8 C 1.46903 * 110.99951 * 179.97438 * 7 6 5 9 9 C 1.53032 * 109.45846 * 275.02815 * 8 7 6 10 10 C 1.53191 * 109.31057 * 178.60455 * 9 8 7 11 11 N 1.46926 * 108.77059 * 54.65340 * 10 9 8 12 12 C 1.36931 * 120.63315 * 126.40201 * 11 10 9 13 13 H 1.08001 * 120.00381 * 331.83427 * 12 11 10 14 14 C 1.38813 * 120.00187 * 151.82980 * 12 11 10 15 15 N 1.31619 * 119.99578 * 343.07915 * 14 12 11 16 16 Si 1.86793 * 120.00368 * 163.07761 * 14 12 11 17 17 H 1.48499 * 109.47239 * 89.99722 * 16 14 12 18 18 H 1.48497 * 109.47404 * 210.00205 * 16 14 12 19 19 H 1.48503 * 109.46961 * 330.00147 * 16 14 12 20 20 C 1.46928 * 118.73537 * 306.39206 * 11 10 9 21 21 C 1.53039 * 109.45507 * 154.97240 * 8 7 6 22 22 C 1.39917 * 107.97114 * 0.02562 * 5 4 3 23 23 N 1.30869 * 108.36337 * 359.71862 * 22 5 4 24 24 H 1.07992 * 120.00393 * 359.72452 * 1 2 3 25 25 H 1.08000 * 119.99385 * 179.72476 * 1 2 3 26 26 H 1.08002 * 119.99951 * 180.27293 * 2 1 3 27 27 H 1.08000 * 126.19367 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.47088 * 209.99871 * 6 5 4 29 29 H 1.08996 * 109.47093 * 330.00153 * 6 5 4 30 30 H 1.00899 * 110.99886 * 303.95416 * 7 6 5 31 31 H 1.08999 * 109.45554 * 35.00263 * 8 7 6 32 32 H 1.09003 * 109.50088 * 298.56535 * 9 8 7 33 33 H 1.08997 * 109.50336 * 58.66515 * 9 8 7 34 34 H 1.09007 * 109.59830 * 294.86414 * 10 9 8 35 35 H 1.09000 * 109.70691 * 174.50712 * 10 9 8 36 36 H 0.97006 * 119.99737 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.57950 * 293.81183 * 20 11 10 38 38 H 1.08999 * 109.70232 * 173.46559 * 20 11 10 39 39 H 1.08998 * 109.50331 * 301.34084 * 21 8 7 40 40 H 1.09005 * 109.49619 * 61.40798 * 21 8 7 41 41 H 1.08002 * 125.81780 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0051 5 6 3.6367 2.6789 -0.0026 6 6 5.0080 3.3039 -0.0059 7 7 5.4486 3.5107 -1.3920 8 6 6.7844 4.1204 -1.4343 9 6 6.6548 5.6407 -1.3172 10 6 8.0513 6.2704 -1.3267 11 7 8.7663 5.8168 -2.5274 12 6 9.3251 6.7214 -3.3902 13 1 8.9015 7.7104 -3.4847 14 6 10.4360 6.3674 -4.1435 15 7 11.1516 5.3154 -3.8063 16 14 10.9154 7.3838 -5.6355 17 1 11.8491 8.4616 -5.2211 18 1 11.5799 6.5110 -6.6364 19 1 9.6981 7.9870 -6.2353 20 6 8.8706 4.3739 -2.7845 21 6 7.4650 3.7655 -2.7583 22 6 2.4188 3.3675 0.0050 23 7 1.4486 2.4892 0.0007 24 1 -0.5400 0.9352 0.0045 25 1 -0.5399 -0.9354 -0.0045 26 1 1.8586 -0.9353 -0.0045 27 1 4.0935 0.5540 -0.0104 28 1 4.9714 4.2630 0.5106 29 1 5.7096 2.6434 0.5035 30 1 5.4291 2.6454 -1.9105 31 1 7.3827 3.7420 -0.6056 32 1 6.0777 6.0227 -2.1593 33 1 6.1490 5.8921 -0.3850 34 1 8.5984 5.9600 -0.4364 35 1 7.9645 7.3569 -1.3418 36 1 11.9278 5.0678 -4.3329 37 1 9.4845 3.9088 -2.0132 38 1 9.3232 4.2066 -3.7619 39 1 7.5358 2.6818 -2.8520 40 1 6.8798 4.1648 -3.5867 41 1 2.2996 4.4409 0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618600555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 124.559527 kcal Electronic energy + Delta-G solvation = -20799.769095 eV Core-core repulsion = 17717.563473 eV Total energy + Delta-G solvation = -3082.205622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50697 -38.02129 -35.64994 -34.64444 -32.38707 -30.89225 -30.49672 -29.72462 -28.56293 -25.34561 -24.00631 -23.20600 -22.09823 -21.21191 -20.64114 -19.59355 -18.97033 -17.60020 -16.71073 -15.41763 -15.24901 -14.84091 -14.73262 -14.46168 -14.27156 -13.87389 -13.44797 -13.42582 -13.08442 -12.97506 -12.47287 -12.21886 -12.07022 -11.79744 -11.34038 -11.13290 -11.01636 -10.75801 -10.67650 -10.65606 -10.29770 -10.14888 -9.89390 -9.55527 -9.46340 -9.28776 -8.43799 -8.37100 -8.06067 -6.62332 -5.75465 -3.16987 1.00756 2.30992 2.48353 2.60549 3.40009 3.46911 3.50116 4.24277 4.53516 4.55473 4.62964 4.78361 5.06930 5.23352 5.34500 5.40011 5.47912 5.52242 5.61216 5.72974 5.77688 5.82462 5.99081 6.01587 6.05039 6.21239 6.39643 6.47947 6.55533 6.60198 6.68603 6.71530 6.87947 7.01493 7.10223 7.41160 7.42075 7.48984 7.67497 7.71031 7.83771 8.49457 9.25594 9.89448 10.46478 11.33341 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044154 B = 0.002937 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.987691 B = 9531.853747 C = 9673.790117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.074 3.926 3 N -0.335 5.335 4 C 0.051 3.949 5 C -0.211 4.211 6 C 0.134 3.866 7 N -0.684 5.684 8 C 0.096 3.904 9 C -0.116 4.116 10 C 0.144 3.856 11 N -0.592 5.592 12 C -0.249 4.249 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.905 5.905 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.174 3.826 21 C -0.140 4.140 22 C 0.077 3.923 23 N -0.298 5.298 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.156 0.844 27 H 0.175 0.825 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.335 0.665 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.015 0.985 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -10.753 8.702 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.036 4.036 3 N -0.112 5.112 4 C -0.091 4.091 5 C -0.222 4.222 6 C 0.004 3.996 7 N -0.315 5.315 8 C -0.013 4.013 9 C -0.156 4.156 10 C 0.017 3.983 11 N -0.315 5.315 12 C -0.378 4.378 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.550 5.550 16 Si 0.731 3.269 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.047 3.953 21 C -0.180 4.180 22 C -0.111 4.111 23 N -0.117 5.117 24 H 0.132 0.868 25 H 0.140 0.860 26 H 0.173 0.827 27 H 0.192 0.808 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.152 0.848 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.671 -10.474 8.554 22.252 hybrid contribution 1.750 -0.320 -0.527 1.855 sum -15.921 -10.793 8.027 20.843 Atomic orbital electron populations 1.24003 0.94527 1.03791 1.02349 1.21215 0.93940 0.85164 1.03300 1.46087 1.04315 1.04909 1.55889 1.22599 0.85307 0.98621 1.02571 1.20191 0.96653 0.91852 1.13523 1.20205 0.89420 0.99195 0.90738 1.60644 1.28004 1.30977 1.11905 1.21480 0.86677 0.95501 0.97628 1.21995 0.98933 0.94201 1.00485 1.20935 0.90431 0.97179 0.89728 1.44044 1.62900 1.01919 1.22611 1.19186 1.06708 0.95891 1.16059 0.91737 1.25039 0.95535 0.98405 1.00830 1.70033 1.17419 1.28422 1.39118 0.86311 0.78205 0.79428 0.82944 1.21438 1.21611 1.20473 1.20726 0.89863 0.83036 1.01626 1.22394 1.00687 0.98605 0.96313 1.23964 0.89779 0.99934 0.97392 1.77393 1.22499 0.87044 1.24783 0.86810 0.85999 0.82693 0.80771 0.90125 0.94966 0.84760 0.94674 0.91778 0.93515 0.96819 0.92759 0.93718 0.96657 0.89413 0.93766 0.91873 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.56 14.35 28.83 0.41 -1.15 16 2 C 0.07 0.60 10.78 -15.94 -0.17 0.43 16 3 N -0.33 -3.70 3.80 -12.74 -0.05 -3.75 16 4 C 0.05 0.52 11.38 -16.82 -0.19 0.33 16 5 C -0.21 -2.42 5.61 -105.03 -0.59 -3.01 16 6 C 0.13 1.60 5.96 -4.97 -0.03 1.57 16 7 N -0.68 -9.64 6.30 -107.95 -0.68 -10.32 16 8 C 0.10 1.61 2.46 -67.67 -0.17 1.44 16 9 C -0.12 -2.08 5.59 -26.62 -0.15 -2.23 16 10 C 0.14 3.06 6.52 -3.71 -0.02 3.04 16 11 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 12 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 13 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 15 N -0.91 -26.41 11.19 55.49 0.62 -25.79 16 16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 21 C -0.14 -2.67 5.36 -26.61 -0.14 -2.81 16 22 C 0.08 0.92 11.95 -17.33 -0.21 0.71 16 23 N -0.30 -3.85 11.73 30.64 0.36 -3.49 16 24 H 0.11 1.07 7.54 -52.49 -0.40 0.68 16 25 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 26 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.08 0.97 7.41 -51.93 -0.38 0.59 16 29 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 30 H 0.33 4.49 8.32 -39.29 -0.33 4.17 16 31 H 0.04 0.61 7.80 -51.93 -0.40 0.20 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.73 7.42 -51.93 -0.39 0.35 16 34 H 0.01 0.30 8.14 -51.92 -0.42 -0.13 16 35 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 39 H 0.04 0.75 8.10 -51.93 -0.42 0.32 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -31.66 336.32 -8.13 -39.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.40 Total: 1.84 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.51 Total: -4.67 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.26 Total: -58.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.66 -8.13 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618600555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.346 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds