Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31857 * 1 3 3 N 1.39528 * 119.99990 * 2 1 4 4 C 1.35816 * 126.10406 * 180.26846 * 3 2 1 5 5 C 1.35332 * 107.61575 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.01472 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47315 * 89.99821 * 6 5 4 8 8 C 1.46903 * 110.99951 * 179.97438 * 7 6 5 9 9 C 1.53032 * 109.45846 * 275.02815 * 8 7 6 10 10 C 1.53191 * 109.31057 * 178.60455 * 9 8 7 11 11 N 1.46926 * 108.77059 * 54.65340 * 10 9 8 12 12 C 1.36931 * 120.63315 * 126.40201 * 11 10 9 13 13 H 1.08001 * 120.00381 * 331.83427 * 12 11 10 14 14 C 1.38813 * 120.00187 * 151.82980 * 12 11 10 15 15 N 1.31619 * 119.99578 * 343.07915 * 14 12 11 16 16 Si 1.86793 * 120.00368 * 163.07761 * 14 12 11 17 17 H 1.48499 * 109.47239 * 89.99722 * 16 14 12 18 18 H 1.48497 * 109.47404 * 210.00205 * 16 14 12 19 19 H 1.48503 * 109.46961 * 330.00147 * 16 14 12 20 20 C 1.46928 * 118.73537 * 306.39206 * 11 10 9 21 21 C 1.53039 * 109.45507 * 154.97240 * 8 7 6 22 22 C 1.39917 * 107.97114 * 0.02562 * 5 4 3 23 23 N 1.30869 * 108.36337 * 359.71862 * 22 5 4 24 24 H 1.07992 * 120.00393 * 359.72452 * 1 2 3 25 25 H 1.08000 * 119.99385 * 179.72476 * 1 2 3 26 26 H 1.08002 * 119.99951 * 180.27293 * 2 1 3 27 27 H 1.08000 * 126.19367 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.47088 * 209.99871 * 6 5 4 29 29 H 1.08996 * 109.47093 * 330.00153 * 6 5 4 30 30 H 1.00899 * 110.99886 * 303.95416 * 7 6 5 31 31 H 1.08999 * 109.45554 * 35.00263 * 8 7 6 32 32 H 1.09003 * 109.50088 * 298.56535 * 9 8 7 33 33 H 1.08997 * 109.50336 * 58.66515 * 9 8 7 34 34 H 1.09007 * 109.59830 * 294.86414 * 10 9 8 35 35 H 1.09000 * 109.70691 * 174.50712 * 10 9 8 36 36 H 0.97006 * 119.99737 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.57950 * 293.81183 * 20 11 10 38 38 H 1.08999 * 109.70232 * 173.46559 * 20 11 10 39 39 H 1.08998 * 109.50331 * 301.34084 * 21 8 7 40 40 H 1.09005 * 109.49619 * 61.40798 * 21 8 7 41 41 H 1.08002 * 125.81780 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0051 5 6 3.6367 2.6789 -0.0026 6 6 5.0080 3.3039 -0.0059 7 7 5.4486 3.5107 -1.3920 8 6 6.7844 4.1204 -1.4343 9 6 6.6548 5.6407 -1.3172 10 6 8.0513 6.2704 -1.3267 11 7 8.7663 5.8168 -2.5274 12 6 9.3251 6.7214 -3.3902 13 1 8.9015 7.7104 -3.4847 14 6 10.4360 6.3674 -4.1435 15 7 11.1516 5.3154 -3.8063 16 14 10.9154 7.3838 -5.6355 17 1 11.8491 8.4616 -5.2211 18 1 11.5799 6.5110 -6.6364 19 1 9.6981 7.9870 -6.2353 20 6 8.8706 4.3739 -2.7845 21 6 7.4650 3.7655 -2.7583 22 6 2.4188 3.3675 0.0050 23 7 1.4486 2.4892 0.0007 24 1 -0.5400 0.9352 0.0045 25 1 -0.5399 -0.9354 -0.0045 26 1 1.8586 -0.9353 -0.0045 27 1 4.0935 0.5540 -0.0104 28 1 4.9714 4.2630 0.5106 29 1 5.7096 2.6434 0.5035 30 1 5.4291 2.6454 -1.9105 31 1 7.3827 3.7420 -0.6056 32 1 6.0777 6.0227 -2.1593 33 1 6.1490 5.8921 -0.3850 34 1 8.5984 5.9600 -0.4364 35 1 7.9645 7.3569 -1.3418 36 1 11.9278 5.0678 -4.3329 37 1 9.4845 3.9088 -2.0132 38 1 9.3232 4.2066 -3.7619 39 1 7.5358 2.6818 -2.8520 40 1 6.8798 4.1648 -3.5867 41 1 2.2996 4.4409 0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618600555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 104.521253 kcal Electronic energy + Delta-G solvation = -20800.638019 eV Core-core repulsion = 17717.563473 eV Total energy + Delta-G solvation = -3083.074547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29568 -39.54448 -36.88182 -35.64732 -34.05728 -32.24869 -31.52652 -31.23251 -29.87654 -26.87645 -25.39391 -23.99392 -23.73169 -22.82850 -21.44057 -20.69377 -20.27060 -18.69572 -18.24704 -16.87837 -16.45015 -16.19143 -15.72498 -15.50715 -15.42206 -15.28260 -15.11422 -14.78188 -14.31898 -14.11095 -13.70087 -13.57708 -13.11006 -13.03201 -12.96462 -12.79166 -12.50034 -12.29682 -12.05189 -11.99093 -11.84610 -11.72174 -11.61227 -11.18291 -11.08589 -10.51781 -10.10844 -9.27610 -9.04723 -8.65372 -7.86113 -5.30699 0.31516 1.47112 1.48713 1.58740 1.62965 1.75095 1.82895 2.52911 3.26682 3.42698 3.63867 3.74123 3.93600 4.06596 4.13298 4.17804 4.29049 4.48708 4.53210 4.59872 4.68528 4.75882 4.83189 4.89680 4.93337 5.01544 5.10668 5.14153 5.17594 5.25269 5.31521 5.39488 5.46156 5.57009 5.67255 5.70229 5.78381 6.24628 6.35872 6.41749 6.60356 6.69289 7.17234 7.89102 8.40509 9.20402 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044154 B = 0.002937 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.987691 B = 9531.853747 C = 9673.790117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.055 3.945 3 N -0.341 5.341 4 C 0.062 3.938 5 C -0.229 4.229 6 C 0.141 3.859 7 N -0.684 5.684 8 C 0.108 3.892 9 C -0.104 4.104 10 C 0.140 3.860 11 N -0.612 5.612 12 C -0.262 4.262 13 H 0.064 0.936 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.272 1.272 20 C 0.180 3.820 21 C -0.126 4.126 22 C 0.066 3.934 23 N -0.334 5.334 24 H 0.089 0.911 25 H 0.153 0.847 26 H 0.194 0.806 27 H 0.208 0.792 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.341 0.659 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.014 0.986 35 H 0.052 0.948 36 H 0.250 0.750 37 H -0.003 1.003 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 -11.980 9.166 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.054 4.054 3 N -0.118 5.118 4 C -0.081 4.081 5 C -0.240 4.240 6 C 0.012 3.988 7 N -0.315 5.315 8 C -0.002 4.002 9 C -0.143 4.143 10 C 0.014 3.986 11 N -0.335 5.335 12 C -0.392 4.392 13 H 0.082 0.918 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.794 3.206 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.197 1.197 20 C 0.053 3.947 21 C -0.165 4.165 22 C -0.121 4.121 23 N -0.154 5.154 24 H 0.107 0.893 25 H 0.170 0.830 26 H 0.211 0.789 27 H 0.225 0.775 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.160 0.840 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.909 -11.702 9.038 24.004 hybrid contribution 2.045 0.016 -0.606 2.133 sum -16.864 -11.686 8.432 22.183 Atomic orbital electron populations 1.24202 0.94691 1.04098 1.01370 1.21912 0.94479 0.85391 1.03607 1.46388 1.04910 1.05108 1.55388 1.23123 0.85492 0.99086 1.00432 1.20158 0.96041 0.92479 1.15317 1.20148 0.89883 0.99546 0.89223 1.60546 1.25770 1.31547 1.13680 1.21210 0.88001 0.94906 0.96035 1.21815 0.96392 0.94796 1.01323 1.21087 0.91904 0.97451 0.88144 1.44331 1.63222 1.02189 1.23783 1.19503 1.06699 0.96351 1.16646 0.91838 1.25786 0.95744 0.99772 1.03404 1.70180 1.17844 1.30044 1.40119 0.85299 0.77891 0.77888 0.79521 1.21064 1.21764 1.19723 1.20543 0.92347 0.82848 0.98940 1.22150 0.97393 0.99580 0.97413 1.24234 0.90080 1.00553 0.97244 1.77340 1.23582 0.88243 1.26214 0.89268 0.82978 0.78928 0.77505 0.90257 0.93816 0.84010 0.94563 0.93121 0.90739 0.96840 0.92943 0.94114 0.98532 0.92886 0.91372 0.93085 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 14.35 67.01 0.96 -1.74 16 2 C 0.05 0.75 10.78 82.66 0.89 1.64 16 3 N -0.34 -6.85 3.80 -194.21 -0.74 -7.59 16 4 C 0.06 1.08 11.38 83.41 0.95 2.03 16 5 C -0.23 -4.74 5.61 -20.13 -0.11 -4.85 16 6 C 0.14 2.99 5.96 85.56 0.51 3.50 16 7 N -0.68 -17.54 6.30 -495.45 -3.12 -20.66 16 8 C 0.11 3.41 2.46 44.94 0.11 3.52 16 9 C -0.10 -3.54 5.59 30.67 0.17 -3.37 16 10 C 0.14 5.89 6.52 86.36 0.56 6.46 16 11 N -0.61 -31.32 2.99 -699.09 -2.09 -33.41 16 12 C -0.26 -14.71 9.58 84.03 0.81 -13.91 16 13 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 14 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 15 N -0.94 -55.86 11.19 21.65 0.24 -55.62 16 16 Si 0.97 45.48 29.59 68.60 2.03 47.51 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.18 8.70 5.30 86.36 0.46 9.16 16 21 C -0.13 -4.67 5.36 30.67 0.16 -4.51 16 22 C 0.07 1.50 11.95 85.24 1.02 2.52 16 23 N -0.33 -8.37 11.73 -56.97 -0.67 -9.04 16 24 H 0.09 1.65 7.54 -2.91 -0.02 1.63 16 25 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 26 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 27 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.08 1.70 7.41 -2.39 -0.02 1.68 16 29 H 0.04 0.85 8.06 -2.39 -0.02 0.83 16 30 H 0.34 8.18 8.32 -89.69 -0.75 7.43 16 31 H 0.04 1.16 7.80 -2.39 -0.02 1.15 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 34 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 36 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 39 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 40 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.66 336.32 2.82 -66.84 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.26 Total: 14.05 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.91 Total: -2.08 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -6.38 Total: -126.32 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.66 2.82 -66.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618600555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.358 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds