Wall clock time and date at job start Mon Mar 30 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34940 * 126.03757 * 2 1 4 4 C 1.35317 * 107.74438 * 179.77616 * 3 2 1 5 5 C 1.50702 * 126.04137 * 180.20917 * 4 3 2 6 6 C 1.53002 * 109.47054 * 300.00198 * 5 4 3 7 7 C 1.53002 * 109.46842 * 60.00090 * 5 4 3 8 8 N 1.46893 * 109.47448 * 180.02562 * 5 4 3 9 9 C 1.46898 * 111.00013 * 180.02562 * 8 5 4 10 10 C 1.53004 * 109.46911 * 179.97438 * 9 8 5 11 11 H 1.08998 * 109.46933 * 304.99750 * 10 9 8 12 12 C 1.47194 * 109.47594 * 64.99851 * 10 9 8 13 13 N 7.42087 * 161.77577 * 251.73404 * 2 1 3 14 14 C 1.53002 * 109.46976 * 184.99736 * 10 9 8 15 15 C 1.50704 * 109.46984 * 174.99545 * 14 10 9 16 16 H 1.07996 * 119.99843 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99955 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47050 * 60.00174 * 19 17 15 21 21 H 1.48499 * 109.47342 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47357 * 300.00231 * 19 17 15 23 23 C 1.39872 * 107.92021 * 0.23195 * 4 3 2 24 24 N 1.30838 * 108.20312 * 359.97438 * 23 4 3 25 25 H 1.08998 * 109.47306 * 89.99468 * 1 2 3 26 26 H 1.09006 * 109.46968 * 209.99780 * 1 2 3 27 27 H 1.08996 * 109.46982 * 329.98985 * 1 2 3 28 28 H 1.08002 * 126.13053 * 0.04913 * 3 2 1 29 29 H 1.09010 * 109.47073 * 59.99861 * 6 5 4 30 30 H 1.09000 * 109.47180 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.47134 * 299.99991 * 6 5 4 32 32 H 1.08994 * 109.47225 * 60.00145 * 7 5 4 33 33 H 1.09000 * 109.47177 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47468 * 299.99734 * 7 5 4 35 35 H 1.00908 * 110.99948 * 303.95009 * 8 5 4 36 36 H 1.08993 * 109.47151 * 299.99382 * 9 8 5 37 37 H 1.08994 * 109.47585 * 60.00035 * 9 8 5 38 38 H 1.08992 * 109.47365 * 294.99942 * 14 10 9 39 39 H 1.09005 * 109.47171 * 55.00039 * 14 10 9 40 40 H 0.97002 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.08001 * 125.89461 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 0.0050 5 6 4.7680 1.5451 0.0113 6 6 4.7672 2.4299 -1.2369 7 6 4.7564 2.4269 1.2616 8 7 5.9734 0.7055 0.0149 9 6 7.1892 1.5299 0.0217 10 6 8.4208 0.6222 0.0259 11 1 8.3598 -0.0691 0.8664 12 6 8.4736 -0.1392 -1.2327 13 7 8.5137 -0.7274 -2.2038 14 6 9.6833 1.4762 0.1586 15 6 10.8865 0.5777 0.2864 16 1 10.7630 -0.4951 0.2737 17 6 12.1449 1.1253 0.4184 18 7 12.2953 2.4318 0.4333 19 14 13.6363 0.0117 0.5760 20 1 13.7432 -0.8463 -0.6314 21 1 14.8618 0.8405 0.7036 22 1 13.4896 -0.8447 1.7803 23 6 3.5346 -0.7322 0.0028 24 7 2.2891 -1.1329 -0.0027 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.9282 2.1193 0.0007 29 1 3.8727 3.0530 -1.2400 30 1 5.6525 3.0658 -1.2321 31 1 4.7754 1.8017 -2.1276 32 1 4.7570 1.7966 2.1508 33 1 5.6417 3.0628 1.2660 34 1 3.8620 3.0501 1.2585 35 1 5.9662 0.0659 0.7954 36 1 7.2054 2.1607 -0.8670 37 1 7.1978 2.1574 0.9129 38 1 9.7914 2.1047 -0.7252 39 1 9.6045 2.1060 1.0449 40 1 13.1806 2.8171 0.5265 41 1 4.4054 -1.3711 0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754865251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:49 Heat of formation + Delta-G solvation = 95.866752 kcal Electronic energy + Delta-G solvation = -20936.642364 eV Core-core repulsion = 17853.192530 eV Total energy + Delta-G solvation = -3083.449834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36199 -38.20172 -36.06588 -33.82504 -33.15971 -32.34445 -30.41132 -28.92442 -27.27698 -27.09287 -26.12825 -23.39665 -21.74812 -21.37114 -20.91006 -19.03549 -17.53088 -16.61177 -16.34156 -15.58038 -15.03463 -14.78375 -14.48393 -14.37403 -14.26713 -13.51288 -13.28373 -13.12938 -12.82634 -12.67697 -12.66205 -12.48331 -12.24900 -11.88540 -11.76481 -11.46759 -11.33827 -11.24009 -11.08281 -10.94800 -10.63639 -10.51893 -10.40397 -10.13716 -9.50048 -9.47251 -9.20710 -8.49143 -8.42575 -8.14364 -6.07188 -4.10048 1.80732 2.42083 2.80313 3.33159 3.37289 3.41333 3.80897 3.90730 4.18893 4.39812 4.45297 4.73472 4.85459 4.87887 4.97075 5.09352 5.13851 5.19205 5.23291 5.31021 5.59672 5.60774 5.65638 5.68344 5.76378 5.93227 5.96373 6.00373 6.07829 6.26244 6.36511 6.49445 6.56604 6.62829 6.88440 7.23564 7.45521 7.55479 7.59182 7.67102 7.88318 8.26288 8.65793 8.94700 9.55261 11.03689 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.003387 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.711336 B = 8264.143969 C = 8592.377294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.383 5.383 3 C 0.053 3.947 4 C -0.214 4.214 5 C 0.191 3.809 6 C -0.136 4.136 7 C -0.177 4.177 8 N -0.680 5.680 9 C 0.062 3.938 10 C 0.009 3.991 11 H 0.098 0.902 12 C 0.256 3.744 13 N -0.480 5.480 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.070 3.930 24 N -0.304 5.304 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.169 0.831 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.341 0.659 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.825 2.112 3.216 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.165 5.165 3 C -0.093 4.093 4 C -0.226 4.226 5 C 0.098 3.902 6 C -0.194 4.194 7 C -0.237 4.237 8 N -0.311 5.311 9 C -0.068 4.068 10 C -0.013 4.013 11 H 0.116 0.884 12 C -0.061 4.061 13 N -0.157 5.157 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.116 4.116 24 N -0.125 5.125 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.186 0.814 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -23.594 0.265 1.068 23.620 hybrid contribution 1.404 0.745 1.366 2.096 sum -22.190 1.010 2.435 22.346 Atomic orbital electron populations 1.21785 0.74619 1.04206 1.03132 1.48419 1.06413 1.03959 1.57700 1.22117 0.90834 0.93109 1.03233 1.19926 0.93532 0.93931 1.15176 1.19020 0.86676 0.90089 0.94393 1.21906 1.01356 0.98723 0.97424 1.22575 1.02301 1.00439 0.98346 1.60643 1.00805 1.19617 1.50029 1.22170 0.87484 0.95142 1.02002 1.19216 0.97569 0.96068 0.88409 0.88393 1.28861 0.90466 0.92551 0.94252 1.80989 1.11294 1.10949 1.12455 1.19152 0.88436 0.94471 0.98568 1.21121 0.91479 0.92984 1.50816 0.92551 1.24948 0.99033 0.94975 0.95005 1.69932 1.23325 1.09937 1.49924 0.86661 0.82034 0.80620 0.78808 1.20231 1.21235 1.20069 1.23804 0.94805 0.94727 0.98296 1.77387 1.01908 1.08065 1.25187 0.91019 0.89485 0.89736 0.81408 0.92903 0.91956 0.91892 0.92543 0.91550 0.92600 0.84043 0.90165 0.92910 0.95600 0.94502 0.92782 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.30 16 2 N -0.38 -3.96 4.01 -68.16 -0.27 -4.23 16 3 C 0.05 0.51 10.80 -17.23 -0.19 0.33 16 4 C -0.21 -2.41 4.77 -105.05 -0.50 -2.91 16 5 C 0.19 2.09 0.87 -132.75 -0.12 1.97 16 6 C -0.14 -1.51 8.11 37.16 0.30 -1.20 16 7 C -0.18 -1.71 8.11 37.16 0.30 -1.41 16 8 N -0.68 -8.57 5.26 -101.14 -0.53 -9.11 16 9 C 0.06 0.88 4.26 -3.82 -0.02 0.86 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.26 5.32 13.67 -20.76 -0.28 5.04 16 13 N -0.48 -10.97 18.54 42.16 0.78 -10.19 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -13.96 8.60 -34.44 -0.30 -14.26 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.07 0.89 11.10 -17.36 -0.19 0.69 16 24 N -0.30 -4.03 12.58 30.63 0.39 -3.65 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.05 0.48 8.00 -51.92 -0.42 0.06 16 30 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.67 6.41 -51.93 -0.33 0.33 16 34 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 35 H 0.34 3.97 8.11 -39.29 -0.32 3.65 16 36 H 0.08 1.20 6.30 -51.93 -0.33 0.87 16 37 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.19 2.22 7.62 -52.49 -0.40 1.82 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -32.58 344.78 -5.68 -38.26 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.21 Total: -0.42 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.74 Total: -7.42 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 1.10 Total: -51.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.58 -5.68 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754865251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.124 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds