Wall clock time and date at job start Mon Mar 30 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34940 * 126.03757 * 2 1 4 4 C 1.35317 * 107.74438 * 179.77616 * 3 2 1 5 5 C 1.50702 * 126.04137 * 180.20917 * 4 3 2 6 6 C 1.53002 * 109.47054 * 300.00198 * 5 4 3 7 7 C 1.53002 * 109.46842 * 60.00090 * 5 4 3 8 8 N 1.46893 * 109.47448 * 180.02562 * 5 4 3 9 9 C 1.46898 * 111.00013 * 180.02562 * 8 5 4 10 10 C 1.53004 * 109.46911 * 179.97438 * 9 8 5 11 11 H 1.08998 * 109.46933 * 304.99750 * 10 9 8 12 12 C 1.47194 * 109.47594 * 64.99851 * 10 9 8 13 13 N 7.42087 * 161.77577 * 251.73404 * 2 1 3 14 14 C 1.53002 * 109.46976 * 184.99736 * 10 9 8 15 15 C 1.50704 * 109.46984 * 174.99545 * 14 10 9 16 16 H 1.07996 * 119.99843 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99955 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47050 * 60.00174 * 19 17 15 21 21 H 1.48499 * 109.47342 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47357 * 300.00231 * 19 17 15 23 23 C 1.39872 * 107.92021 * 0.23195 * 4 3 2 24 24 N 1.30838 * 108.20312 * 359.97438 * 23 4 3 25 25 H 1.08998 * 109.47306 * 89.99468 * 1 2 3 26 26 H 1.09006 * 109.46968 * 209.99780 * 1 2 3 27 27 H 1.08996 * 109.46982 * 329.98985 * 1 2 3 28 28 H 1.08002 * 126.13053 * 0.04913 * 3 2 1 29 29 H 1.09010 * 109.47073 * 59.99861 * 6 5 4 30 30 H 1.09000 * 109.47180 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.47134 * 299.99991 * 6 5 4 32 32 H 1.08994 * 109.47225 * 60.00145 * 7 5 4 33 33 H 1.09000 * 109.47177 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47468 * 299.99734 * 7 5 4 35 35 H 1.00908 * 110.99948 * 303.95009 * 8 5 4 36 36 H 1.08993 * 109.47151 * 299.99382 * 9 8 5 37 37 H 1.08994 * 109.47585 * 60.00035 * 9 8 5 38 38 H 1.08992 * 109.47365 * 294.99942 * 14 10 9 39 39 H 1.09005 * 109.47171 * 55.00039 * 14 10 9 40 40 H 0.97002 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.08001 * 125.89461 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 0.0050 5 6 4.7680 1.5451 0.0113 6 6 4.7672 2.4299 -1.2369 7 6 4.7564 2.4269 1.2616 8 7 5.9734 0.7055 0.0149 9 6 7.1892 1.5299 0.0217 10 6 8.4208 0.6222 0.0259 11 1 8.3598 -0.0691 0.8664 12 6 8.4736 -0.1392 -1.2327 13 7 8.5137 -0.7274 -2.2038 14 6 9.6833 1.4762 0.1586 15 6 10.8865 0.5777 0.2864 16 1 10.7630 -0.4951 0.2737 17 6 12.1449 1.1253 0.4184 18 7 12.2953 2.4318 0.4333 19 14 13.6363 0.0117 0.5760 20 1 13.7432 -0.8463 -0.6314 21 1 14.8618 0.8405 0.7036 22 1 13.4896 -0.8447 1.7803 23 6 3.5346 -0.7322 0.0028 24 7 2.2891 -1.1329 -0.0027 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.9282 2.1193 0.0007 29 1 3.8727 3.0530 -1.2400 30 1 5.6525 3.0658 -1.2321 31 1 4.7754 1.8017 -2.1276 32 1 4.7570 1.7966 2.1508 33 1 5.6417 3.0628 1.2660 34 1 3.8620 3.0501 1.2585 35 1 5.9662 0.0659 0.7954 36 1 7.2054 2.1607 -0.8670 37 1 7.1978 2.1574 0.9129 38 1 9.7914 2.1047 -0.7252 39 1 9.6045 2.1060 1.0449 40 1 13.1806 2.8171 0.5265 41 1 4.4054 -1.3711 0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754865251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:47 Heat of formation + Delta-G solvation = 74.949872 kcal Electronic energy + Delta-G solvation = -20937.549388 eV Core-core repulsion = 17853.192530 eV Total energy + Delta-G solvation = -3084.356858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16133 -39.30407 -37.55079 -35.56357 -34.26721 -33.66141 -31.69180 -29.83297 -28.28758 -27.96707 -27.38879 -24.73884 -23.50172 -22.30643 -21.71143 -19.89250 -18.74397 -18.31241 -17.72613 -16.58599 -16.27286 -15.93353 -15.74190 -15.43675 -15.13710 -14.81288 -14.36887 -14.28945 -13.95687 -13.74539 -13.67084 -13.63888 -13.36953 -13.27584 -13.07544 -12.92689 -12.65199 -12.49257 -12.38054 -12.29145 -12.25656 -11.96198 -11.75503 -11.36516 -11.20277 -11.08740 -10.52073 -10.27586 -9.34297 -9.05478 -8.16817 -6.24455 1.03895 1.42290 1.44246 1.51017 1.78411 1.93878 2.13850 2.20963 2.43676 3.18434 3.22866 3.42749 3.73960 4.09427 4.15753 4.24874 4.35715 4.43291 4.45374 4.48151 4.51814 4.72608 4.75257 4.80584 4.88029 4.92195 4.94797 5.03387 5.13800 5.18306 5.29398 5.42037 5.51127 5.52932 5.67700 5.76821 5.83045 6.15859 6.23674 6.33099 6.63552 6.83882 6.87207 6.99975 7.43771 8.93868 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.003387 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.711336 B = 8264.143969 C = 8592.377294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.065 3.935 4 C -0.230 4.230 5 C 0.195 3.805 6 C -0.135 4.135 7 C -0.172 4.172 8 N -0.689 5.689 9 C 0.076 3.924 10 C 0.020 3.980 11 H 0.118 0.882 12 C 0.267 3.733 13 N -0.519 5.519 14 C 0.039 3.961 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.946 3.054 20 H -0.283 1.283 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.052 3.948 24 N -0.343 5.343 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.205 0.795 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.347 0.653 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.000 1.000 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 2.847 4.232 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.082 4.082 4 C -0.242 4.242 5 C 0.103 3.897 6 C -0.193 4.193 7 C -0.231 4.231 8 N -0.321 5.321 9 C -0.054 4.054 10 C -0.002 4.002 11 H 0.136 0.864 12 C -0.049 4.049 13 N -0.196 5.196 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.772 3.228 20 H -0.209 1.209 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.133 4.133 24 N -0.165 5.165 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.222 0.778 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.166 0.834 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -25.275 0.981 2.095 25.380 hybrid contribution 1.822 0.524 1.028 2.157 sum -23.453 1.505 3.123 23.708 Atomic orbital electron populations 1.22153 0.72235 1.05864 1.04332 1.48784 1.07814 1.03402 1.56494 1.22640 0.90116 0.94371 1.01092 1.19989 0.94401 0.93275 1.16556 1.19009 0.85686 0.89940 0.95016 1.21906 1.02369 0.98547 0.96448 1.22507 1.03103 1.00204 0.97270 1.60558 1.00856 1.19998 1.50684 1.21943 0.86597 0.94304 1.02533 1.19206 0.97260 0.96026 0.87741 0.86408 1.29400 0.89324 0.91816 0.94339 1.80986 1.12533 1.12374 1.13729 1.18973 0.89584 0.94198 0.97205 1.21550 0.92909 0.93370 1.49875 0.92866 1.25690 1.01752 0.96170 0.95098 1.70024 1.23893 1.11263 1.51125 0.85785 0.79175 0.79040 0.78788 1.20851 1.20739 1.18748 1.23843 0.94747 0.95655 0.99018 1.77307 1.02505 1.10016 1.26670 0.90012 0.89508 0.86484 0.77808 0.90440 0.92451 0.94231 0.92702 0.91914 0.90641 0.83387 0.90912 0.91126 0.98155 0.94523 0.92747 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.47 127.77 1.47 2.32 16 2 N -0.38 -7.13 4.01 -369.56 -1.48 -8.61 16 3 C 0.06 1.06 10.80 83.54 0.90 1.97 16 4 C -0.23 -4.82 4.77 -20.14 -0.10 -4.92 16 5 C 0.20 3.93 0.87 2.78 0.00 3.93 16 6 C -0.14 -2.76 8.11 71.98 0.58 -2.17 16 7 C -0.17 -2.84 8.11 71.98 0.58 -2.26 16 8 N -0.69 -16.68 5.26 -473.91 -2.49 -19.17 16 9 C 0.08 2.08 4.26 86.31 0.37 2.45 16 10 C 0.02 0.69 2.35 -12.60 -0.03 0.66 16 11 H 0.12 3.74 8.14 -2.39 -0.02 3.73 16 12 C 0.27 11.13 13.67 89.44 1.22 12.35 16 13 N -0.52 -23.92 18.54 20.01 0.37 -23.55 16 14 C 0.04 1.79 4.42 29.85 0.13 1.93 16 15 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.77 16 17 C 0.01 0.65 5.46 84.65 0.46 1.11 16 18 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 19 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 C 0.05 1.32 11.10 85.24 0.95 2.26 16 24 N -0.34 -8.91 12.58 -57.02 -0.72 -9.63 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.08 1.16 8.00 -2.38 -0.02 1.15 16 30 H 0.06 1.22 6.40 -2.39 -0.02 1.20 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.09 6.41 -2.39 -0.02 1.07 16 34 H 0.07 0.96 8.00 -2.38 -0.02 0.94 16 35 H 0.35 7.72 8.11 -89.69 -0.73 6.99 16 36 H 0.07 2.13 6.30 -2.39 -0.02 2.11 16 37 H 0.07 1.71 6.30 -2.39 -0.02 1.69 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.18 4.43 7.62 -2.91 -0.02 4.41 16 Total: -1.00 -70.54 344.78 5.05 -65.49 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.30 Total: 11.24 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 6.76 Total: -8.72 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.04 Total: -113.68 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.54 5.05 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754865251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.437 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds