Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38388 * 120.00118 * 2 1 4 4 N 1.32135 * 119.99377 * 179.76542 * 3 2 1 5 5 C 1.32148 * 120.00236 * 0.50847 * 4 3 2 6 6 C 1.50699 * 120.00045 * 179.76932 * 5 4 3 7 7 N 1.46908 * 109.46767 * 274.72204 * 6 5 4 8 8 C 1.46954 * 110.99966 * 66.20188 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18687 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 H 1.07998 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46863 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47096 * 119.99970 * 16 14 12 19 19 H 1.48500 * 109.46942 * 239.99556 * 16 14 12 20 20 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 21 21 C 1.46956 * 110.99532 * 189.99783 * 7 6 5 22 22 C 1.38347 * 120.00007 * 359.48992 * 5 4 3 23 23 N 1.32125 * 119.99895 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47237 * 269.97972 * 1 2 3 25 25 H 1.08997 * 109.46963 * 29.98349 * 1 2 3 26 26 H 1.09002 * 109.46817 * 149.97738 * 1 2 3 27 27 H 1.07994 * 120.00322 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47356 * 154.72595 * 6 5 4 29 29 H 1.09003 * 109.47008 * 34.71925 * 6 5 4 30 30 H 1.08997 * 109.49355 * 63.21813 * 8 7 6 31 31 H 1.09004 * 109.48943 * 303.15264 * 8 7 6 32 32 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 33 33 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 34 34 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 35 35 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 36 36 H 0.96999 * 120.00715 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.49355 * 60.64341 * 20 10 9 38 38 H 1.09003 * 109.49032 * 180.68883 * 20 10 9 39 39 H 1.09002 * 109.48908 * 56.84799 * 21 7 6 40 40 H 1.09002 * 109.49369 * 296.77670 * 21 7 6 41 41 H 1.08004 * 119.99754 * 180.27580 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1983 0.0047 5 6 4.1810 0.0538 -0.0008 6 6 5.6880 0.0537 -0.0007 7 7 6.1776 0.1744 -1.3805 8 6 5.8313 1.4842 -1.9496 9 6 6.2877 1.5399 -3.4095 10 7 7.7371 1.3065 -3.4761 11 6 8.2268 1.4272 -4.8558 12 6 9.7338 1.4271 -4.8558 13 1 10.2737 1.3460 -3.9240 14 6 10.4232 1.5316 -6.0452 15 7 9.7657 1.6308 -7.1798 16 14 12.2912 1.5307 -6.0452 17 1 12.7861 1.4082 -4.6505 18 1 12.7857 0.3842 -6.8489 19 1 12.7868 2.7997 -6.6362 20 6 8.0834 -0.0033 -2.9070 21 6 7.6270 -0.0590 -1.4471 22 6 3.4892 -1.1443 -0.0008 23 7 2.1676 -1.1442 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6591 2.1338 0.0004 28 1 6.0512 -0.8777 0.4336 29 1 6.0513 0.8956 0.5887 30 1 6.3297 2.2704 -1.3825 31 1 4.7520 1.6283 -1.9002 32 1 6.0579 2.5210 -3.8251 33 1 5.7688 0.7713 -3.9822 34 1 7.8634 0.5853 -5.4452 35 1 7.8635 2.3586 -5.2902 36 1 10.2506 1.7040 -8.0167 37 1 7.5850 -0.7895 -3.4740 38 1 9.1627 -0.1476 -2.9567 39 1 7.8569 -1.0401 -1.0315 40 1 8.1459 0.7096 -0.8743 41 1 4.0292 -2.0796 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760944618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = 59.367620 kcal Electronic energy + Delta-G solvation = -21093.348287 eV Core-core repulsion = 18008.315732 eV Total energy + Delta-G solvation = -3085.032555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33772 -38.70222 -35.67477 -34.33636 -33.15500 -32.36388 -30.41440 -29.79684 -27.56403 -25.69978 -24.82955 -23.85888 -22.94809 -21.94026 -21.23584 -19.16525 -17.89088 -16.51580 -16.25582 -16.09576 -15.91813 -15.04550 -14.65740 -14.49762 -14.28410 -14.13486 -13.55469 -13.41075 -13.15558 -12.90440 -12.79527 -12.37997 -12.20656 -12.04188 -11.64602 -11.56705 -11.21222 -11.16535 -10.85421 -10.73601 -10.63092 -10.36040 -10.31319 -9.73735 -9.25220 -9.22850 -9.11079 -8.43426 -8.18352 -7.20968 -6.01609 -4.03057 0.59093 0.98249 3.31417 3.38737 3.40654 3.43380 3.80841 3.98310 4.25049 4.30825 4.43307 4.51659 4.84507 4.91573 4.99030 5.18808 5.22377 5.33737 5.34916 5.37493 5.39505 5.59365 5.60389 5.65922 5.81189 5.88768 5.91000 6.06715 6.19196 6.28057 6.47045 6.60361 6.68758 7.10216 7.15239 7.19630 7.36365 7.38704 7.64444 7.81493 8.10721 8.22703 8.56690 9.04849 9.61201 11.09371 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041384 B = 0.003258 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.421410 B = 8592.916693 C = 8893.709791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.070 3.930 3 C 0.052 3.948 4 N -0.429 5.429 5 C 0.087 3.913 6 C 0.106 3.894 7 N -0.535 5.535 8 C 0.063 3.937 9 C 0.057 3.943 10 N -0.538 5.538 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.068 3.932 21 C 0.059 3.941 22 C 0.074 3.926 23 N -0.441 5.441 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.027 0.973 34 H -0.009 1.009 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.029 0.971 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -3.768 16.166 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.071 4.071 3 C -0.109 4.109 4 N -0.144 5.144 5 C -0.053 4.053 6 C -0.023 4.023 7 N -0.261 5.261 8 C -0.064 4.064 9 C -0.072 4.072 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.061 4.061 21 C -0.069 4.069 22 C -0.087 4.087 23 N -0.157 5.157 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.184 0.816 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.009 0.991 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.359 -3.743 15.971 22.472 hybrid contribution 0.960 0.060 -0.257 0.996 sum -14.399 -3.683 15.714 21.629 Atomic orbital electron populations 1.20663 0.87863 1.03935 1.03268 1.22308 0.98435 0.89839 0.96513 1.23595 0.90646 0.99141 0.97489 1.68303 1.08594 1.29570 1.07925 1.22133 0.97821 0.89567 0.95797 1.20888 0.87427 1.02552 0.91460 1.62213 1.15175 1.32210 1.16461 1.22194 0.99993 0.88642 0.95621 1.22072 0.90338 1.00374 0.94413 1.62287 1.10344 1.29135 1.24588 1.19705 0.95618 0.96181 0.81684 1.21192 0.90941 1.49490 0.92845 0.91850 1.24999 0.98695 0.95489 0.95490 1.69969 1.35431 1.50721 0.97705 0.86449 0.85438 0.77510 0.78063 1.19664 1.21118 1.21040 1.21989 1.01314 0.90796 0.92003 1.22273 0.85706 1.00250 0.98625 1.23561 0.90220 0.99383 0.95517 1.68308 1.08808 1.29332 1.09221 0.90169 0.90242 0.90230 0.81589 0.88922 0.92675 0.94025 0.90920 0.91089 0.95454 0.99096 0.95264 0.92988 0.95317 0.89378 0.90906 0.94008 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.19 36.01 0.37 -0.27 16 2 C 0.07 0.70 6.79 -82.41 -0.56 0.14 16 3 C 0.05 0.53 10.88 -17.37 -0.19 0.34 16 4 N -0.43 -5.40 8.97 -9.29 -0.08 -5.49 16 5 C 0.09 1.06 5.69 -82.42 -0.47 0.59 16 6 C 0.11 1.26 5.30 -4.97 -0.03 1.23 16 7 N -0.54 -8.00 4.70 -235.90 -1.11 -9.11 16 8 C 0.06 1.04 5.36 -3.77 -0.02 1.02 16 9 C 0.06 1.11 5.61 -3.76 -0.02 1.09 16 10 N -0.54 -11.97 4.70 -235.90 -1.11 -13.08 16 11 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 12 C -0.51 -14.31 8.47 -34.44 -0.29 -14.60 16 13 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 21 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 22 C 0.07 0.84 10.86 -17.37 -0.19 0.65 16 23 N -0.44 -5.22 10.42 -9.28 -0.10 -5.31 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 29 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.16 6.20 -51.93 -0.32 0.84 16 32 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 39 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -32.34 333.12 -9.72 -42.06 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.50 Total: -3.52 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.56 Total: -1.02 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -1.66 Total: -59.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.34 -9.72 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760944618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.427 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds