Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38388 * 120.00118 * 2 1 4 4 N 1.32135 * 119.99377 * 179.76542 * 3 2 1 5 5 C 1.32148 * 120.00236 * 0.50847 * 4 3 2 6 6 C 1.50699 * 120.00045 * 179.76932 * 5 4 3 7 7 N 1.46908 * 109.46767 * 274.72204 * 6 5 4 8 8 C 1.46954 * 110.99966 * 66.20188 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18687 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 H 1.07998 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46863 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47096 * 119.99970 * 16 14 12 19 19 H 1.48500 * 109.46942 * 239.99556 * 16 14 12 20 20 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 21 21 C 1.46956 * 110.99532 * 189.99783 * 7 6 5 22 22 C 1.38347 * 120.00007 * 359.48992 * 5 4 3 23 23 N 1.32125 * 119.99895 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47237 * 269.97972 * 1 2 3 25 25 H 1.08997 * 109.46963 * 29.98349 * 1 2 3 26 26 H 1.09002 * 109.46817 * 149.97738 * 1 2 3 27 27 H 1.07994 * 120.00322 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47356 * 154.72595 * 6 5 4 29 29 H 1.09003 * 109.47008 * 34.71925 * 6 5 4 30 30 H 1.08997 * 109.49355 * 63.21813 * 8 7 6 31 31 H 1.09004 * 109.48943 * 303.15264 * 8 7 6 32 32 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 33 33 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 34 34 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 35 35 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 36 36 H 0.96999 * 120.00715 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.49355 * 60.64341 * 20 10 9 38 38 H 1.09003 * 109.49032 * 180.68883 * 20 10 9 39 39 H 1.09002 * 109.48908 * 56.84799 * 21 7 6 40 40 H 1.09002 * 109.49369 * 296.77670 * 21 7 6 41 41 H 1.08004 * 119.99754 * 180.27580 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1983 0.0047 5 6 4.1810 0.0538 -0.0008 6 6 5.6880 0.0537 -0.0007 7 7 6.1776 0.1744 -1.3805 8 6 5.8313 1.4842 -1.9496 9 6 6.2877 1.5399 -3.4095 10 7 7.7371 1.3065 -3.4761 11 6 8.2268 1.4272 -4.8558 12 6 9.7338 1.4271 -4.8558 13 1 10.2737 1.3460 -3.9240 14 6 10.4232 1.5316 -6.0452 15 7 9.7657 1.6308 -7.1798 16 14 12.2912 1.5307 -6.0452 17 1 12.7861 1.4082 -4.6505 18 1 12.7857 0.3842 -6.8489 19 1 12.7868 2.7997 -6.6362 20 6 8.0834 -0.0033 -2.9070 21 6 7.6270 -0.0590 -1.4471 22 6 3.4892 -1.1443 -0.0008 23 7 2.1676 -1.1442 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6591 2.1338 0.0004 28 1 6.0512 -0.8777 0.4336 29 1 6.0513 0.8956 0.5887 30 1 6.3297 2.2704 -1.3825 31 1 4.7520 1.6283 -1.9002 32 1 6.0579 2.5210 -3.8251 33 1 5.7688 0.7713 -3.9822 34 1 7.8634 0.5853 -5.4452 35 1 7.8635 2.3586 -5.2902 36 1 10.2506 1.7040 -8.0167 37 1 7.5850 -0.7895 -3.4740 38 1 9.1627 -0.1476 -2.9567 39 1 7.8569 -1.0401 -1.0315 40 1 8.1459 0.7096 -0.8743 41 1 4.0292 -2.0796 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760944618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = 35.218012 kcal Electronic energy + Delta-G solvation = -21094.395493 eV Core-core repulsion = 18008.315732 eV Total energy + Delta-G solvation = -3086.079761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15065 -40.11796 -37.05110 -35.40413 -34.60205 -33.76243 -31.87938 -30.95529 -29.09258 -27.12731 -25.66525 -25.15212 -24.40131 -23.38233 -22.55697 -20.66946 -18.73190 -18.48954 -17.48917 -17.22029 -16.69893 -16.54249 -15.95856 -15.85567 -15.79843 -15.36924 -15.16351 -14.91505 -14.10119 -14.01571 -13.68755 -13.54900 -13.33736 -13.18450 -13.04532 -12.90668 -12.68438 -12.53725 -12.46783 -12.26122 -12.18493 -12.02535 -11.87658 -11.54059 -11.19483 -10.63773 -10.06057 -10.00321 -9.38171 -9.06479 -8.21665 -6.32499 -0.20105 0.16049 1.41182 1.41930 1.55801 2.39835 2.53480 3.01729 3.10588 3.16987 3.26369 3.29937 3.52125 3.76125 3.96036 4.10207 4.14899 4.19201 4.31429 4.37511 4.48060 4.53854 4.63614 4.66951 4.69179 4.77878 4.85197 4.88219 4.93875 5.00021 5.04139 5.13460 5.21527 5.25013 5.48526 5.62788 5.92663 5.97943 6.05225 6.32101 6.35482 6.58280 6.83669 6.84338 7.37552 8.90140 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041384 B = 0.003258 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.421410 B = 8592.916693 C = 8893.709791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.068 3.932 3 C 0.046 3.954 4 N -0.453 5.453 5 C 0.069 3.931 6 C 0.111 3.889 7 N -0.542 5.542 8 C 0.081 3.919 9 C 0.057 3.943 10 N -0.544 5.544 11 C 0.209 3.791 12 C -0.522 4.522 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.067 3.933 21 C 0.071 3.929 22 C 0.068 3.932 23 N -0.464 5.464 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.195 0.805 28 H 0.123 0.877 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.015 0.985 34 H -0.041 1.041 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 -4.205 18.124 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 C -0.115 4.115 4 N -0.169 5.169 5 C -0.071 4.071 6 C -0.017 4.017 7 N -0.267 5.267 8 C -0.048 4.048 9 C -0.071 4.071 10 N -0.269 5.269 11 C 0.082 3.918 12 C -0.560 4.560 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.061 4.061 21 C -0.057 4.057 22 C -0.091 4.091 23 N -0.180 5.180 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.212 0.788 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.033 0.967 34 H -0.024 1.024 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.060 0.940 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.457 -4.194 17.959 24.063 hybrid contribution 0.842 0.200 -0.863 1.222 sum -14.615 -3.994 17.097 22.844 Atomic orbital electron populations 1.20782 0.85371 1.04825 1.04507 1.22898 1.00100 0.89374 0.94871 1.24095 0.90106 1.00499 0.96797 1.68271 1.09872 1.30130 1.08601 1.22163 0.97878 0.89888 0.97138 1.20954 0.87473 1.04049 0.89231 1.62156 1.14766 1.30912 1.18912 1.21946 1.00098 0.89619 0.93111 1.22119 0.88562 0.99621 0.96833 1.62235 1.12101 1.30942 1.21591 1.19355 0.95341 0.93312 0.83758 1.21467 0.91678 1.49653 0.93176 0.91602 1.25974 1.04252 0.94710 0.94914 1.70103 1.37728 1.51394 0.98491 0.85273 0.78624 0.77712 0.78636 1.18426 1.20345 1.20472 1.22024 1.00504 0.88885 0.94723 1.22164 0.86023 1.02307 0.95169 1.23853 0.90357 0.99905 0.94999 1.68375 1.09155 1.30325 1.10159 0.88584 0.88065 0.90617 0.78823 0.85911 0.92802 0.94509 0.90231 0.91610 0.96695 1.02376 0.98142 0.92658 0.96616 0.90749 0.87342 0.93969 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.19 71.24 0.73 -0.28 16 2 C 0.07 1.24 6.79 42.55 0.29 1.53 16 3 C 0.05 0.85 10.88 84.68 0.92 1.77 16 4 N -0.45 -10.75 8.97 -183.30 -1.64 -12.39 16 5 C 0.07 1.56 5.69 42.54 0.24 1.81 16 6 C 0.11 2.38 5.30 85.55 0.45 2.84 16 7 N -0.54 -15.35 4.70 -900.24 -4.23 -19.59 16 8 C 0.08 2.61 5.36 86.31 0.46 3.07 16 9 C 0.06 2.29 5.61 86.31 0.48 2.77 16 10 N -0.54 -24.85 4.70 -900.26 -4.23 -29.09 16 11 C 0.21 11.65 4.72 85.56 0.40 12.05 16 12 C -0.52 -30.13 8.47 25.60 0.22 -29.91 16 13 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 16 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 C 0.07 2.65 5.43 86.31 0.47 3.12 16 21 C 0.07 2.07 5.61 86.31 0.48 2.55 16 22 C 0.07 1.44 10.86 84.67 0.92 2.36 16 23 N -0.46 -10.28 10.42 -183.29 -1.91 -12.19 16 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.61 8.09 -2.39 -0.02 0.59 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.12 1.87 7.94 -2.39 -0.02 1.85 16 29 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 2.49 6.20 -2.39 -0.01 2.48 16 32 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 35 H 0.00 0.03 8.03 -2.39 -0.02 0.01 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 3.12 6.79 -2.39 -0.02 3.10 16 39 H 0.11 2.43 8.07 -2.39 -0.02 2.41 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.48 333.12 -2.17 -73.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.00 Total: 6.08 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.53 Total: 4.10 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -11.73 Total: -130.48 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.48 -2.17 -73.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760944618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.876 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds