Wall clock time and date at job start Mon Mar 30 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50704 * 120.00094 * 2 1 4 4 C 1.53003 * 109.46628 * 294.99675 * 3 2 1 5 5 C 1.52999 * 109.46609 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46982 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00084 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00033 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99953 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47310 * 60.00020 * 10 8 6 12 12 H 1.48498 * 109.47091 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47145 * 300.00160 * 10 8 6 14 14 N 1.28015 * 119.99767 * 179.97438 * 2 1 3 15 15 N 1.40099 * 120.00405 * 0.02562 * 14 2 1 16 16 C 1.38488 * 120.00529 * 180.02562 * 15 14 2 17 17 N 1.32521 * 119.21216 * 0.26429 * 16 15 14 18 18 C 1.32258 * 120.73511 * 180.29140 * 17 16 15 19 19 C 1.50706 * 120.40244 * 179.72003 * 18 17 16 20 20 C 1.38627 * 119.19943 * 359.44572 * 18 17 16 21 21 C 1.38627 * 118.55970 * 0.27649 * 20 18 17 22 22 C 1.50694 * 120.40113 * 180.02562 * 21 20 18 23 23 N 1.32262 * 119.19561 * 359.97438 * 21 20 18 24 24 H 1.08995 * 109.46830 * 270.00428 * 1 2 3 25 25 H 1.09000 * 109.46886 * 29.99990 * 1 2 3 26 26 H 1.08993 * 109.46850 * 150.00199 * 1 2 3 27 27 H 1.08993 * 109.46930 * 54.99562 * 3 2 1 28 28 H 1.08998 * 109.46767 * 175.00011 * 3 2 1 29 29 H 1.08990 * 109.47515 * 300.00129 * 4 3 2 30 30 H 1.08998 * 109.47272 * 60.00646 * 4 3 2 31 31 H 1.08996 * 109.47777 * 300.00105 * 5 4 3 32 32 H 1.09006 * 109.47279 * 60.00431 * 5 4 3 33 33 H 0.96998 * 120.00021 * 179.97438 * 9 8 6 34 34 H 0.97005 * 119.99354 * 359.97438 * 15 14 2 35 35 H 1.08999 * 109.47015 * 269.72710 * 19 18 17 36 36 H 1.09000 * 109.46646 * 29.71862 * 19 18 17 37 37 H 1.09000 * 109.47248 * 149.72580 * 19 18 17 38 38 H 1.07998 * 120.71870 * 180.25209 * 20 18 17 39 39 H 1.09005 * 109.46996 * 90.00412 * 22 21 20 40 40 H 1.09007 * 109.47203 * 209.99933 * 22 21 20 41 41 H 1.08998 * 109.47568 * 329.99897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7521 3.3768 -1.3072 6 6 2.4839 4.1117 -2.5952 7 1 1.8328 3.6772 -3.3394 8 6 3.0695 5.3389 -2.8236 9 7 3.8619 5.8682 -1.9173 10 14 2.7364 6.2501 -4.4198 11 1 1.2810 6.5190 -4.5420 12 1 3.4785 7.5364 -4.4197 13 1 3.1843 5.4198 -5.5666 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3220 0.0005 16 6 2.1390 -3.5214 0.0016 17 7 3.4641 -3.5032 0.0079 18 6 4.1555 -4.6307 0.0033 19 6 5.6623 -4.6012 0.0043 20 6 3.4775 -5.8398 0.0035 21 6 2.0914 -5.8224 0.0025 22 6 1.3125 -7.1125 0.0032 23 7 1.4608 -4.6598 0.0021 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9317 1.9145 0.8417 28 1 3.3288 1.1078 0.0896 29 1 2.3164 1.4421 -2.1492 30 1 0.9194 2.2488 -1.3970 31 1 2.4230 3.9861 -0.4655 32 1 3.8205 3.1800 -1.2174 33 1 4.2742 6.7313 -2.0781 34 1 0.4766 -2.3219 0.0005 35 1 6.0262 -4.5945 -1.0232 36 1 6.0078 -3.7041 0.5179 37 1 6.0426 -5.4838 0.5187 38 1 4.0176 -6.7751 0.0039 39 1 1.1240 -7.4225 1.0311 40 1 0.3631 -6.9640 -0.5114 41 1 1.8869 -7.8840 -0.5095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841601760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:29 Heat of formation + Delta-G solvation = 70.130421 kcal Electronic energy + Delta-G solvation = -20040.260892 eV Core-core repulsion = 16955.695047 eV Total energy + Delta-G solvation = -3084.565845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08273 -38.19513 -35.27728 -34.85310 -33.69478 -32.19491 -30.59821 -29.53294 -28.33898 -27.58305 -27.16358 -23.91176 -22.69937 -21.98156 -20.34037 -19.21772 -17.81290 -17.17473 -16.29126 -15.97333 -15.61405 -15.58893 -14.55592 -14.21784 -14.11283 -13.87523 -13.66747 -13.47871 -13.25038 -13.14036 -12.75179 -12.37789 -12.28466 -12.03540 -11.78276 -11.69161 -11.34877 -11.01117 -10.79337 -10.72689 -10.55043 -10.36144 -9.96618 -9.78606 -9.64213 -9.32126 -9.12959 -9.06227 -8.31870 -7.96947 -5.97293 -3.99485 0.98119 1.06573 2.28953 2.34504 3.35149 3.39523 3.42077 3.80578 3.90365 4.17871 4.41829 4.48386 4.75439 4.99197 4.99985 5.09267 5.11426 5.21672 5.28127 5.36807 5.38600 5.40682 5.42563 5.54994 5.72159 5.80625 5.87773 5.92435 6.04103 6.15146 6.30317 6.51323 6.73699 6.81338 6.86672 7.12711 7.28024 7.70245 7.84685 7.90357 8.02961 8.45103 8.53716 9.07325 9.64277 11.13998 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.002763 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.143249 B =10129.968057 C =10579.743750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 C -0.062 4.062 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.232 5.232 15 N -0.553 5.553 16 C 0.593 3.407 17 N -0.535 5.535 18 C 0.214 3.786 19 C -0.106 4.106 20 C -0.290 4.290 21 C 0.214 3.786 22 C -0.103 4.103 23 N -0.578 5.578 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.397 0.603 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 -24.578 6.316 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.036 5.036 15 N -0.280 5.280 16 C 0.237 3.763 17 N -0.257 5.257 18 C 0.065 3.935 19 C -0.163 4.163 20 C -0.316 4.316 21 C 0.066 3.934 22 C -0.161 4.161 23 N -0.303 5.303 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.240 0.760 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.010 -23.971 6.368 24.985 hybrid contribution -1.049 0.029 -0.922 1.397 sum -4.060 -23.942 5.445 24.887 Atomic orbital electron populations 1.21374 0.93321 1.04034 1.03323 1.25475 0.94490 0.94229 0.94322 1.20663 0.99979 0.88474 1.01013 1.21634 1.00654 0.98327 0.93547 1.19101 0.95429 0.89959 0.97069 1.21213 1.28437 1.03354 1.02911 0.92798 1.25015 0.95216 0.97553 0.96655 1.69950 1.31282 1.18003 1.34230 0.86673 0.78309 0.79025 0.84079 1.20285 1.21304 1.20281 1.74639 1.23548 0.90101 1.15354 1.44842 1.06655 0.99991 1.76501 1.18624 0.85237 0.84388 0.88095 1.67920 1.06544 1.30821 1.20397 1.21581 0.97285 0.87377 0.87261 1.20783 0.87846 1.03979 1.03720 1.22225 0.95478 1.00084 1.13774 1.21317 0.91243 0.92756 0.88050 1.20757 1.00371 0.91447 1.03515 1.67547 1.41311 0.97444 1.23974 0.90055 0.88821 0.92144 0.89747 0.90024 0.93127 0.93009 0.96385 0.96336 0.92957 0.75990 0.89624 0.89730 0.90246 0.84049 0.89795 0.90123 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.46 36.01 0.34 -1.56 16 2 C 0.11 1.66 6.55 -78.91 -0.52 1.15 16 3 C -0.06 -1.03 5.60 -27.88 -0.16 -1.19 16 4 C -0.10 -2.05 5.03 -26.73 -0.13 -2.19 16 5 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 6 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 7 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.23 -3.93 10.93 35.60 0.39 -3.54 16 15 N -0.55 -8.54 6.26 29.79 0.19 -8.36 16 16 C 0.59 9.45 8.54 -322.62 -2.76 6.69 16 17 N -0.53 -8.62 9.88 -10.12 -0.10 -8.72 16 18 C 0.21 2.65 6.82 -82.26 -0.56 2.09 16 19 C -0.11 -0.93 10.22 36.01 0.37 -0.56 16 20 C -0.29 -2.97 9.53 -39.29 -0.37 -3.34 16 21 C 0.21 2.36 6.82 -82.27 -0.56 1.80 16 22 C -0.10 -0.70 10.22 36.00 0.37 -0.33 16 23 N -0.58 -8.08 10.40 -10.12 -0.11 -8.19 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 1.09 6.91 -51.93 -0.36 0.73 16 26 H 0.06 0.65 6.31 -51.93 -0.33 0.33 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 5.23 6.50 -182.59 -1.19 4.04 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.48 8.09 -51.93 -0.42 0.05 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -33.83 348.35 -10.47 -44.30 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.27 Total: -0.74 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -4.53 Total: -10.53 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 1.11 Total: -55.00 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.83 -10.47 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841601760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.430 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds