Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50704 * 120.00094 * 2 1 4 4 C 1.53003 * 109.46628 * 294.99675 * 3 2 1 5 5 C 1.52999 * 109.46609 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46982 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00084 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00033 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99953 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47310 * 60.00020 * 10 8 6 12 12 H 1.48498 * 109.47091 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47145 * 300.00160 * 10 8 6 14 14 N 1.28015 * 119.99767 * 179.97438 * 2 1 3 15 15 N 1.40099 * 120.00405 * 0.02562 * 14 2 1 16 16 C 1.38488 * 120.00529 * 180.02562 * 15 14 2 17 17 N 1.32521 * 119.21216 * 0.26429 * 16 15 14 18 18 C 1.32258 * 120.73511 * 180.29140 * 17 16 15 19 19 C 1.50706 * 120.40244 * 179.72003 * 18 17 16 20 20 C 1.38627 * 119.19943 * 359.44572 * 18 17 16 21 21 C 1.38627 * 118.55970 * 0.27649 * 20 18 17 22 22 C 1.50694 * 120.40113 * 180.02562 * 21 20 18 23 23 N 1.32262 * 119.19561 * 359.97438 * 21 20 18 24 24 H 1.08995 * 109.46830 * 270.00428 * 1 2 3 25 25 H 1.09000 * 109.46886 * 29.99990 * 1 2 3 26 26 H 1.08993 * 109.46850 * 150.00199 * 1 2 3 27 27 H 1.08993 * 109.46930 * 54.99562 * 3 2 1 28 28 H 1.08998 * 109.46767 * 175.00011 * 3 2 1 29 29 H 1.08990 * 109.47515 * 300.00129 * 4 3 2 30 30 H 1.08998 * 109.47272 * 60.00646 * 4 3 2 31 31 H 1.08996 * 109.47777 * 300.00105 * 5 4 3 32 32 H 1.09006 * 109.47279 * 60.00431 * 5 4 3 33 33 H 0.96998 * 120.00021 * 179.97438 * 9 8 6 34 34 H 0.97005 * 119.99354 * 359.97438 * 15 14 2 35 35 H 1.08999 * 109.47015 * 269.72710 * 19 18 17 36 36 H 1.09000 * 109.46646 * 29.71862 * 19 18 17 37 37 H 1.09000 * 109.47248 * 149.72580 * 19 18 17 38 38 H 1.07998 * 120.71870 * 180.25209 * 20 18 17 39 39 H 1.09005 * 109.46996 * 90.00412 * 22 21 20 40 40 H 1.09007 * 109.47203 * 209.99933 * 22 21 20 41 41 H 1.08998 * 109.47568 * 329.99897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7521 3.3768 -1.3072 6 6 2.4839 4.1117 -2.5952 7 1 1.8328 3.6772 -3.3394 8 6 3.0695 5.3389 -2.8236 9 7 3.8619 5.8682 -1.9173 10 14 2.7364 6.2501 -4.4198 11 1 1.2810 6.5190 -4.5420 12 1 3.4785 7.5364 -4.4197 13 1 3.1843 5.4198 -5.5666 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3220 0.0005 16 6 2.1390 -3.5214 0.0016 17 7 3.4641 -3.5032 0.0079 18 6 4.1555 -4.6307 0.0033 19 6 5.6623 -4.6012 0.0043 20 6 3.4775 -5.8398 0.0035 21 6 2.0914 -5.8224 0.0025 22 6 1.3125 -7.1125 0.0032 23 7 1.4608 -4.6598 0.0021 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9317 1.9145 0.8417 28 1 3.3288 1.1078 0.0896 29 1 2.3164 1.4421 -2.1492 30 1 0.9194 2.2488 -1.3970 31 1 2.4230 3.9861 -0.4655 32 1 3.8205 3.1800 -1.2174 33 1 4.2742 6.7313 -2.0781 34 1 0.4766 -2.3219 0.0005 35 1 6.0262 -4.5945 -1.0232 36 1 6.0078 -3.7041 0.5179 37 1 6.0426 -5.4838 0.5187 38 1 4.0176 -6.7751 0.0039 39 1 1.1240 -7.4225 1.0311 40 1 0.3631 -6.9640 -0.5114 41 1 1.8869 -7.8840 -0.5095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841601760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 51.196067 kcal Electronic energy + Delta-G solvation = -20041.081948 eV Core-core repulsion = 16955.695047 eV Total energy + Delta-G solvation = -3085.386900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01833 -39.37447 -36.67318 -35.72378 -35.27661 -33.82223 -31.91917 -30.34250 -29.37893 -28.94183 -28.21534 -25.65182 -23.88706 -22.89537 -22.06902 -20.37731 -18.93277 -18.30627 -18.14947 -17.23214 -16.60206 -16.49390 -16.39486 -15.65374 -15.20702 -15.09201 -14.63235 -14.28882 -14.18688 -13.97362 -13.94931 -13.65752 -13.30632 -13.23658 -12.95602 -12.91293 -12.80453 -12.59121 -12.41940 -12.40632 -11.91417 -11.50009 -11.38948 -11.29087 -11.21487 -10.98415 -10.69751 -10.51366 -10.10886 -9.03474 -8.17019 -6.27552 0.02452 0.18088 1.19335 1.23529 1.41324 1.44121 1.51966 2.43100 2.84634 3.01899 3.16123 3.35008 3.59057 3.62934 4.01433 4.17190 4.22821 4.35329 4.40604 4.49372 4.56580 4.62324 4.68905 4.72468 4.75131 4.78483 4.92884 4.95709 4.99285 5.08917 5.20427 5.21970 5.30754 5.36104 5.48166 5.56321 5.80415 5.83388 5.90335 6.28485 6.33532 6.85401 6.89496 7.41157 7.49186 8.94526 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.002763 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.143249 B =10129.968057 C =10579.743750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 C -0.053 4.053 4 C -0.086 4.086 5 C 0.024 3.976 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.270 1.270 14 N -0.263 5.263 15 N -0.553 5.553 16 C 0.566 3.434 17 N -0.577 5.577 18 C 0.190 3.810 19 C -0.102 4.102 20 C -0.276 4.276 21 C 0.199 3.801 22 C -0.098 4.098 23 N -0.590 5.590 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.002 0.998 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.183 0.817 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -26.743 5.792 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.014 4.014 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.196 1.196 14 N -0.068 5.068 15 N -0.282 5.282 16 C 0.210 3.790 17 N -0.301 5.301 18 C 0.043 3.957 19 C -0.159 4.159 20 C -0.300 4.300 21 C 0.053 3.947 22 C -0.155 4.155 23 N -0.316 5.316 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.021 0.979 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.200 0.800 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.954 -26.180 5.844 27.114 hybrid contribution -0.689 0.576 -0.722 1.152 sum -4.643 -25.604 5.123 26.521 Atomic orbital electron populations 1.21399 0.90566 1.04659 1.04866 1.25355 0.96141 0.92957 0.94037 1.20438 0.99392 0.89592 0.99832 1.21363 1.00655 0.95591 0.94909 1.19014 0.94316 0.92374 0.95656 1.21687 1.28500 1.03951 1.03980 0.92262 1.25958 0.94895 0.98611 1.00388 1.70085 1.32307 1.18510 1.36400 0.85545 0.78743 0.77574 0.79455 1.18938 1.20868 1.19558 1.74505 1.25228 0.91122 1.15962 1.44714 1.06892 0.99487 1.77134 1.18903 0.85661 0.84997 0.89486 1.67896 1.07082 1.33080 1.22022 1.22259 0.98787 0.87480 0.87126 1.20876 0.85778 1.04805 1.04436 1.22662 0.95348 1.00830 1.11206 1.22187 0.92382 0.93271 0.86909 1.20889 1.00088 0.89742 1.04816 1.67629 1.41651 0.97794 1.24499 0.87966 0.88405 0.91172 0.88158 0.91788 0.94242 0.91263 0.97918 0.99290 0.92803 0.75133 0.88839 0.91359 0.86860 0.79966 0.88252 0.90414 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.46 71.24 0.67 -2.79 16 2 C 0.11 3.33 6.55 46.53 0.30 3.63 16 3 C -0.05 -1.80 5.60 29.85 0.17 -1.64 16 4 C -0.09 -3.50 5.03 30.59 0.15 -3.34 16 5 C 0.02 1.24 4.97 29.85 0.15 1.39 16 6 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 10 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 N -0.26 -9.11 10.93 -41.19 -0.45 -9.56 16 15 N -0.55 -17.36 6.26 -59.67 -0.37 -17.73 16 16 C 0.57 18.30 8.54 261.42 2.23 20.54 16 17 N -0.58 -19.00 9.88 -185.93 -1.84 -20.83 16 18 C 0.19 4.57 6.82 42.59 0.29 4.86 16 19 C -0.10 -1.67 10.22 71.24 0.73 -0.95 16 20 C -0.28 -4.98 9.53 22.46 0.21 -4.76 16 21 C 0.20 4.02 6.82 42.59 0.29 4.31 16 22 C -0.10 -1.02 10.22 71.23 0.73 -0.29 16 23 N -0.59 -16.23 10.40 -185.94 -1.93 -18.16 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 2.10 6.91 -2.39 -0.02 2.08 16 26 H 0.07 1.43 6.31 -2.39 -0.02 1.42 16 27 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.06 2.39 8.11 -2.39 -0.02 2.37 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 2.55 7.01 -2.39 -0.02 2.54 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.40 10.67 6.50 -213.31 -1.39 9.28 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 38 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.11 0.53 8.09 -2.39 -0.02 0.51 16 Total: -1.00 -75.82 348.35 3.98 -71.84 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.36 Total: 14.19 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 6.63 Total: -9.47 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -4.31 Total: -123.19 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -75.82 3.98 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841601760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.039 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds