Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00247 * 2 1 4 4 C 1.38530 * 119.99908 * 180.02562 * 2 1 3 5 5 C 1.39680 * 120.48659 * 352.32033 * 4 2 1 6 6 C 1.38085 * 118.49209 * 179.97438 * 5 4 2 7 7 N 1.32516 * 119.29294 * 359.97438 * 6 5 4 8 8 C 1.32470 * 120.93429 * 0.02562 * 7 6 5 9 9 N 1.38396 * 119.18335 * 179.97438 * 8 7 6 10 10 C 1.46845 * 111.00073 * 123.94773 * 9 8 7 11 11 C 1.53040 * 109.52147 * 174.16264 * 10 9 8 12 12 C 1.53116 * 109.27695 * 59.18414 * 11 10 9 13 13 C 1.53123 * 109.15957 * 302.34142 * 12 11 10 14 14 H 1.09003 * 109.53592 * 297.69677 * 13 12 11 15 15 C 1.50698 * 109.50238 * 177.59747 * 13 12 11 16 16 H 1.08000 * 120.00068 * 0.19454 * 15 13 12 17 17 C 1.37880 * 120.00089 * 180.19918 * 15 13 12 18 18 N 1.31509 * 120.00265 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 119.99875 * 0.02562 * 17 15 13 20 20 H 1.48504 * 109.47084 * 89.99857 * 19 17 15 21 21 H 1.48497 * 109.47181 * 210.00040 * 19 17 15 22 22 H 1.48499 * 109.46865 * 329.99973 * 19 17 15 23 23 C 1.46853 * 110.99392 * 359.74081 * 9 8 7 24 24 N 1.32476 * 121.64314 * 0.24982 * 8 7 6 25 25 H 1.09002 * 109.47148 * 174.61572 * 1 2 3 26 26 H 1.09004 * 109.46633 * 294.60849 * 1 2 3 27 27 H 1.08992 * 109.47295 * 54.60936 * 1 2 3 28 28 H 1.09004 * 109.47412 * 270.00078 * 3 2 1 29 29 H 1.08997 * 109.47255 * 30.00106 * 3 2 1 30 30 H 1.09002 * 109.47592 * 150.00091 * 3 2 1 31 31 H 1.07998 * 120.75500 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.35742 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.45977 * 54.14609 * 10 9 8 34 34 H 1.08996 * 109.46760 * 294.18259 * 10 9 8 35 35 H 1.09005 * 109.49846 * 179.12124 * 11 10 9 36 36 H 1.09000 * 109.50223 * 299.23751 * 11 10 9 37 37 H 1.09000 * 109.52663 * 62.24608 * 12 11 10 38 38 H 1.09002 * 109.52077 * 182.44015 * 12 11 10 39 39 H 0.96995 * 120.00261 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.46137 * 305.85593 * 23 9 8 41 41 H 1.09003 * 109.46283 * 65.82970 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1997 -0.0005 5 6 1.4788 -2.4099 0.1598 6 6 2.2100 -3.5813 0.1523 7 7 3.5244 -3.5241 -0.0061 8 6 4.1424 -2.3620 -0.1560 9 7 5.5167 -2.3445 -0.3182 10 6 5.8916 -1.6492 -1.5561 11 6 7.4149 -1.5215 -1.6296 12 6 8.0414 -2.9183 -1.5969 13 6 7.5963 -3.6390 -0.3213 14 1 7.9573 -3.0933 0.5505 15 6 8.1608 -5.0362 -0.3098 16 1 8.7783 -5.3759 -1.1282 17 6 7.8890 -5.8809 0.7455 18 7 8.3813 -7.1003 0.7554 19 14 6.8204 -5.2936 2.1606 20 1 5.3978 -5.6044 1.8688 21 1 7.2313 -5.9825 3.4103 22 1 6.9824 -3.8269 2.3276 23 6 6.0677 -3.7053 -0.2857 24 7 3.4782 -1.2158 -0.1493 25 1 -0.3633 -1.0231 -0.0964 26 1 -0.3633 0.4280 0.9344 27 1 -0.3633 0.5951 -0.8377 28 1 2.3792 1.5834 -1.0277 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1384 0.5138 31 1 0.4064 -2.4292 0.2859 32 1 1.7159 -4.5340 0.2734 33 1 5.4431 -0.6558 -1.5648 34 1 5.5329 -2.2170 -2.4146 35 1 7.6937 -1.0193 -2.5561 36 1 7.7730 -0.9420 -0.7788 37 1 7.7140 -3.4850 -2.4686 38 1 9.1279 -2.8305 -1.6054 39 1 8.1898 -7.6946 1.4976 40 1 5.7470 -4.2052 0.6282 41 1 5.7082 -4.2635 -1.1502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853760334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = 62.946823 kcal Electronic energy + Delta-G solvation = -22043.859977 eV Core-core repulsion = 18958.982627 eV Total energy + Delta-G solvation = -3084.877349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -42.19179 -39.99811 -37.92771 -35.59278 -34.28362 -33.91419 -32.15302 -31.29839 -29.04697 -27.28860 -26.62489 -25.78814 -24.20433 -22.96458 -22.32079 -20.55272 -19.08509 -18.79401 -18.39772 -17.37225 -16.65915 -16.34261 -16.05822 -15.85651 -15.76000 -15.43658 -15.22127 -14.88856 -14.61514 -14.40606 -14.20290 -13.72001 -13.38205 -13.15995 -13.06361 -12.97582 -12.84710 -12.24647 -12.09479 -12.03841 -11.80475 -11.64926 -11.50219 -11.15203 -11.06931 -10.98008 -10.69835 -10.10666 -9.53613 -8.84895 -8.34279 -6.36738 0.10234 0.44717 1.28894 1.31352 1.42039 1.74214 2.27157 2.38986 2.89832 3.03771 3.38933 3.70206 3.84299 4.02519 4.06435 4.13315 4.22109 4.33484 4.42901 4.47129 4.52497 4.55770 4.65105 4.69914 4.71792 4.76670 4.89148 4.93053 4.94003 4.98505 5.09465 5.16522 5.24299 5.50370 5.51749 5.64127 5.69104 5.79932 6.00738 6.24994 6.31425 6.53556 6.71494 7.29272 7.36326 8.82168 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.005717 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.029529 B = 4896.613643 C = 5715.878311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.098 3.902 4 C 0.437 3.563 5 C -0.315 4.315 6 C 0.180 3.820 7 N -0.629 5.629 8 C 0.517 3.483 9 N -0.476 5.476 10 C 0.078 3.922 11 C -0.108 4.108 12 C -0.101 4.101 13 C 0.013 3.987 14 H 0.025 0.975 15 C -0.514 4.514 16 H 0.046 0.954 17 C 0.027 3.973 18 N -0.941 5.941 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.294 1.294 22 H -0.261 1.261 23 C 0.089 3.911 24 N -0.600 5.600 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.098 0.902 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.267 0.733 40 H 0.053 0.947 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.101 17.806 -2.789 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.320 5.320 3 C -0.044 4.044 4 C 0.192 3.808 5 C -0.343 4.343 6 C 0.018 3.982 7 N -0.355 5.355 8 C 0.159 3.841 9 N -0.195 5.195 10 C -0.047 4.047 11 C -0.145 4.145 12 C -0.139 4.139 13 C -0.006 4.006 14 H 0.043 0.957 15 C -0.552 4.552 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.581 5.581 19 Si 0.764 3.236 20 H -0.198 1.198 21 H -0.221 1.221 22 H -0.185 1.185 23 C -0.038 4.038 24 N -0.330 5.330 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.197 0.803 32 H 0.206 0.794 33 H 0.116 0.884 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.974 18.121 -2.442 25.640 hybrid contribution -1.239 -0.966 0.478 1.642 sum -19.213 17.155 -1.964 25.833 Atomic orbital electron populations 1.22073 0.75560 1.04653 1.03321 1.46507 1.06799 1.02247 1.76463 1.21639 0.97080 0.83818 1.01904 1.18716 0.87401 0.87993 0.86693 1.22309 1.03765 0.91703 1.16516 1.23280 0.87734 1.00001 0.87167 1.68495 1.13366 1.28779 1.24822 1.20888 0.90236 0.83982 0.88952 1.58516 1.03919 1.20142 1.36947 1.22158 0.98035 0.98505 0.86024 1.21661 0.92278 0.97002 1.03583 1.21479 1.00323 0.95235 0.96843 1.19242 0.90013 0.94894 0.96486 0.95679 1.21299 1.30574 0.97375 1.05996 0.93554 1.25658 0.96525 0.94728 1.00178 1.69997 1.47031 1.07798 1.33264 0.86054 0.79451 0.79105 0.79026 1.19760 1.22099 1.18538 1.22320 0.96697 0.84684 1.00096 1.67395 1.08498 1.29258 1.27886 0.89297 0.90516 0.90127 0.92824 0.88698 0.92726 0.80331 0.79405 0.88403 0.94734 0.87952 0.91046 0.93240 0.91720 0.92411 0.92903 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.58 127.77 1.35 2.18 16 2 N -0.61 -11.68 3.38 -753.46 -2.54 -14.22 16 3 C 0.10 1.65 10.46 127.77 1.34 2.99 16 4 C 0.44 11.99 7.37 133.20 0.98 12.97 16 5 C -0.31 -7.53 9.32 22.58 0.21 -7.32 16 6 C 0.18 5.33 11.28 84.55 0.95 6.29 16 7 N -0.63 -25.39 8.67 -198.27 -1.72 -27.11 16 8 C 0.52 20.81 7.17 261.51 1.87 22.69 16 9 N -0.48 -20.06 4.72 -708.97 -3.34 -23.41 16 10 C 0.08 2.69 5.33 86.33 0.46 3.15 16 11 C -0.11 -3.41 6.09 30.65 0.19 -3.23 16 12 C -0.10 -4.06 5.23 30.67 0.16 -3.90 16 13 C 0.01 0.65 1.85 -11.49 -0.02 0.63 16 14 H 0.03 1.30 7.21 -2.39 -0.02 1.28 16 15 C -0.51 -30.43 9.15 25.60 0.23 -30.19 16 16 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 17 C 0.03 1.67 5.45 84.66 0.46 2.13 16 18 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 19 Si 0.94 49.49 24.37 68.60 1.67 51.16 16 20 H -0.27 -14.30 6.88 99.48 0.68 -13.61 16 21 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.26 -13.59 6.53 99.48 0.65 -12.94 16 23 C 0.09 4.30 3.38 86.33 0.29 4.59 16 24 N -0.60 -20.77 8.58 -195.55 -1.68 -22.45 16 25 H 0.09 0.73 5.47 -2.39 -0.01 0.71 16 26 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 30 H 0.05 1.21 7.52 -2.39 -0.02 1.19 16 31 H 0.18 2.63 5.99 -2.91 -0.02 2.61 16 32 H 0.19 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.10 3.04 7.56 -2.39 -0.02 3.03 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 39 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 40 H 0.05 2.78 2.83 -2.39 -0.01 2.78 16 41 H 0.03 1.61 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -77.39 319.07 2.11 -75.28 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.94 Total: 7.89 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 8.48 Total: 12.98 kcal Atomic # 7 Polarization: -138.33 SS G_CDS: -8.98 Total: -147.31 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.67 Total: 51.16 kcal Total: -77.39 2.11 -75.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853760334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.226 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds