Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47238 * 299.99664 * 3 2 1 6 6 H 1.48496 * 109.47187 * 59.99984 * 3 2 1 7 7 C 1.38808 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99935 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46803 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75531 * 95.00108 * 11 10 9 13 13 N 1.35310 * 106.17796 * 179.97438 * 12 11 10 14 14 C 1.46503 * 125.87099 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46738 * 125.00138 * 14 13 12 16 16 C 1.53951 * 113.57656 * 185.00261 * 15 14 13 17 17 C 1.52908 * 86.78683 * 220.66152 * 16 15 14 18 18 C 1.52906 * 121.14322 * 150.62061 * 17 16 15 19 19 C 1.53957 * 86.77902 * 100.81952 * 18 17 16 20 20 C 1.52912 * 121.13762 * 259.18846 * 17 16 15 21 21 C 1.52911 * 88.03801 * 24.90129 * 17 16 15 22 22 N 1.28712 * 108.26186 * 0.26497 * 13 12 11 23 23 N 1.28638 * 110.17990 * 359.55421 * 22 13 12 24 24 H 0.97008 * 120.00107 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00113 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.47374 * 59.99608 * 10 9 7 27 27 H 1.09004 * 109.46907 * 299.99975 * 10 9 7 28 28 H 1.08004 * 126.91272 * 359.94890 * 12 11 10 29 29 H 1.09006 * 109.46826 * 5.00676 * 14 13 12 30 30 H 1.08993 * 109.47479 * 245.00171 * 14 13 12 31 31 H 1.08993 * 112.82697 * 316.09123 * 15 14 13 32 32 H 1.09003 * 113.66431 * 106.18815 * 16 15 14 33 33 H 1.09004 * 113.74757 * 335.14741 * 16 15 14 34 34 H 1.08997 * 113.66080 * 346.35409 * 18 17 16 35 35 H 1.08997 * 113.66819 * 215.29213 * 18 17 16 36 36 H 1.09004 * 113.57788 * 139.34050 * 19 18 17 37 37 H 1.08996 * 113.58263 * 270.12959 * 19 18 17 38 38 H 1.09002 * 113.66342 * 144.69991 * 20 17 16 39 39 H 1.09000 * 113.74216 * 13.66061 * 20 17 16 40 40 H 1.09001 * 113.66341 * 89.56991 * 21 17 16 41 41 H 1.08996 * 113.66624 * 220.62641 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 0.6246 -5.4789 -1.0818 13 7 -0.2299 -6.4153 -0.6085 14 6 -0.9696 -7.3887 -1.4156 15 6 -0.6749 -8.8015 -0.9074 16 6 -1.3096 -9.9099 -1.7668 17 6 -1.6416 -10.6191 -0.4534 18 6 -2.8623 -11.5323 -0.3344 19 6 -1.8860 -12.7126 -0.4895 20 6 -0.7880 -11.7812 0.0554 21 6 -1.6064 -9.2528 0.2322 22 7 -0.2858 -6.2997 0.6722 23 7 0.4876 -5.3504 1.0664 24 1 -0.4851 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 2.6847 -3.7146 0.8894 27 1 2.6847 -3.7145 -0.8906 28 1 0.8905 -5.3061 -2.1142 29 1 -0.6611 -7.3058 -2.4578 30 1 -2.0382 -7.1895 -1.3361 31 1 0.3823 -8.9636 -0.6981 32 1 -0.5920 -10.4487 -2.3856 33 1 -2.1890 -9.5849 -2.3230 34 1 -3.5646 -11.4338 -1.1621 35 1 -3.3466 -11.4904 0.6412 36 1 -2.1103 -13.5531 0.1673 37 1 -1.7277 -13.0144 -1.5248 38 1 -0.6893 -11.8092 1.1406 39 1 0.1671 -11.8827 -0.4599 40 1 -2.5691 -8.7416 0.2387 41 1 -1.1260 -9.2664 1.2105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881426967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = 148.775111 kcal Electronic energy + Delta-G solvation = -20552.183949 eV Core-core repulsion = 17471.028394 eV Total energy + Delta-G solvation = -3081.155556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86060 -40.77651 -36.28573 -34.83449 -33.44598 -31.75198 -29.83550 -28.30364 -26.19750 -26.10211 -25.65841 -23.81886 -22.75335 -21.69212 -20.93786 -20.11569 -18.30041 -17.37743 -16.86042 -16.13545 -15.72785 -15.53855 -15.17007 -14.57603 -14.44386 -13.97298 -13.63298 -13.10152 -13.07873 -12.72367 -12.61379 -12.45953 -12.32967 -12.15501 -11.82760 -11.29798 -11.17286 -11.09587 -10.82925 -10.79306 -10.50835 -10.42649 -10.31547 -10.14692 -10.01344 -9.77452 -9.60086 -8.85066 -8.74389 -6.87541 -5.70613 -2.99959 1.95347 2.55326 3.00981 3.47711 3.53085 3.55642 4.00513 4.02727 4.20574 4.24445 4.40236 4.46772 4.64934 4.72314 4.78291 4.87453 4.97785 5.09684 5.24982 5.34367 5.38241 5.39707 5.41257 5.46889 5.55258 5.56621 5.61764 5.67129 5.69713 5.83598 5.96036 6.01665 6.08894 6.18448 6.22677 6.48810 6.73013 6.83082 6.91439 7.74812 8.46800 8.95844 9.58500 10.15042 10.51074 11.52325 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.060734 B = 0.002678 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.914872 B =10452.061219 C =10508.859250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.007 4.007 12 C -0.048 4.048 13 N -0.297 5.297 14 C 0.127 3.873 15 C -0.119 4.119 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.113 4.113 22 N -0.090 5.090 23 N -0.259 5.259 24 H 0.254 0.746 25 H 0.385 0.615 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.187 0.813 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -26.182 -6.214 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.145 4.145 12 C -0.198 4.198 13 N -0.091 5.091 14 C 0.005 3.995 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.165 4.165 19 C -0.178 4.178 20 C -0.155 4.155 21 C -0.150 4.150 22 N -0.070 5.070 23 N -0.126 5.126 24 H 0.064 0.936 25 H 0.219 0.781 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.204 0.796 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.743 -26.625 -4.924 27.489 hybrid contribution 0.456 1.343 -1.148 1.825 sum -4.287 -25.282 -6.072 26.352 Atomic orbital electron populations 1.69699 1.05174 1.25478 1.57756 1.24766 0.95532 0.97733 1.03058 0.86082 0.78765 0.84010 0.77123 1.20470 1.21947 1.21870 1.19286 0.91123 0.83846 1.42596 0.90841 1.42325 1.06000 0.99299 1.89459 1.18929 0.90094 0.81443 0.99136 1.22440 1.02785 1.00775 0.88520 1.23411 0.99207 0.95241 1.01976 1.47284 1.30528 1.24429 1.06827 1.22102 0.97008 0.86295 0.94064 1.22801 1.00998 0.91578 0.98414 1.22678 1.00667 0.95576 0.95269 1.22413 0.97692 0.93326 0.97353 1.22744 0.95919 0.95679 1.02108 1.22827 0.96966 0.96787 1.01230 1.22651 0.97287 0.94539 1.00981 1.22826 0.99432 0.94683 0.98046 1.78228 1.19379 1.16799 0.92555 1.75100 1.06732 1.04391 1.26396 0.93598 0.78119 0.94418 0.94576 0.79635 0.87849 0.88528 0.88511 0.90893 0.89286 0.91458 0.89911 0.91594 0.90338 0.89759 0.91463 0.89588 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.48 5.59 -61.08 -0.34 -19.82 16 10 C 0.23 5.06 6.82 -5.19 -0.04 5.02 16 11 C -0.01 -0.14 6.61 -82.78 -0.55 -0.69 16 12 C -0.05 -0.75 11.50 -17.05 -0.20 -0.94 16 13 N -0.30 -4.28 3.44 -61.26 -0.21 -4.49 16 14 C 0.13 1.17 6.29 -4.04 -0.03 1.14 16 15 C -0.12 -0.99 3.77 -89.64 -0.34 -1.33 16 16 C -0.10 -0.65 7.40 -26.28 -0.19 -0.85 16 17 C -0.11 -0.77 1.11 -154.71 -0.17 -0.94 16 18 C -0.13 -0.83 7.84 -26.28 -0.21 -1.04 16 19 C -0.14 -0.86 8.08 -25.75 -0.21 -1.07 16 20 C -0.12 -0.82 7.84 -26.28 -0.21 -1.02 16 21 C -0.11 -1.00 7.39 -26.28 -0.19 -1.20 16 22 N -0.09 -1.63 12.94 60.35 0.78 -0.85 16 23 N -0.26 -5.45 12.41 33.29 0.41 -5.04 16 24 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.39 11.15 7.66 -40.82 -0.31 10.84 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.19 2.26 8.06 -52.48 -0.42 1.84 16 29 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.10 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -34.16 341.79 -7.67 -41.82 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.59 Total: 4.32 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.57 Total: -10.43 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 1.37 Total: -58.66 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.16 -7.67 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881426967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.599 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds