Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75262 * 95.00251 * 11 10 9 13 13 N 1.35314 * 106.17487 * 180.02562 * 12 11 10 14 14 C 1.46506 * 125.86473 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46903 * 124.99998 * 14 13 12 16 16 C 1.53006 * 109.46928 * 179.97438 * 15 14 13 17 17 H 1.08995 * 115.54674 * 29.32712 * 16 15 14 18 18 C 1.53000 * 117.49594 * 243.62252 * 16 15 14 19 19 C 1.53001 * 117.49842 * 174.99995 * 16 15 14 20 20 H 1.08996 * 117.49848 * 359.97438 * 19 16 15 21 21 C 1.52998 * 117.49592 * 215.00361 * 19 16 15 22 22 C 1.53005 * 117.49951 * 128.62240 * 21 19 16 23 23 C 1.52994 * 59.99813 * 252.50808 * 22 21 19 24 24 N 1.28716 * 108.26328 * 0.02562 * 13 12 11 25 25 N 1.28625 * 110.17841 * 359.72204 * 24 13 12 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.08005 * 126.90953 * 0.03147 * 12 11 10 31 31 H 1.09006 * 109.46850 * 244.99830 * 14 13 12 32 32 H 1.08999 * 109.47059 * 4.99628 * 14 13 12 33 33 H 1.09006 * 109.47230 * 299.99599 * 15 14 13 34 34 H 1.08999 * 109.47565 * 59.99939 * 15 14 13 35 35 H 1.09000 * 117.50363 * 359.97438 * 18 16 15 36 36 H 1.09001 * 117.49571 * 145.02480 * 18 16 15 37 37 H 1.08996 * 115.54758 * 274.32360 * 21 19 16 38 38 H 1.09000 * 117.49426 * 359.97438 * 22 21 19 39 39 H 1.09000 * 117.49780 * 145.01680 * 22 21 19 40 40 H 1.09006 * 117.50006 * 252.51142 * 23 22 21 41 41 H 1.09001 * 117.50146 * 107.49224 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0786 -4.8022 -0.0109 12 6 0.6204 -5.4766 -1.0913 13 7 -0.2332 -6.4133 -0.6169 14 6 -0.9755 -7.3853 -1.4234 15 6 -0.6800 -8.7989 -0.9180 16 6 -1.4557 -9.8140 -1.7599 17 1 -1.6516 -9.5181 -2.7905 18 6 -2.5205 -10.6532 -1.0507 19 6 -1.2033 -11.2981 -1.4868 20 1 -0.4843 -11.5513 -0.7077 21 6 -1.2453 -12.2533 -2.6813 22 6 -0.0566 -13.1973 -2.8731 23 6 -0.2495 -12.0087 -3.8168 24 7 -0.2808 -6.3034 0.6647 25 7 0.4944 -5.3553 1.0579 26 1 -0.4850 0.8400 0.0040 27 1 0.3555 -2.3880 -0.0021 28 1 2.6812 -3.7126 -0.9040 29 1 2.6880 -3.7165 0.8760 30 1 0.8833 -5.3022 -2.1242 31 1 -2.0439 -7.1857 -1.3405 32 1 -0.6699 -7.3009 -2.4663 33 1 0.3885 -8.9984 -1.0009 34 1 -0.9855 -8.8832 0.1249 35 1 -2.6681 -10.4824 0.0157 36 1 -3.4173 -10.9095 -1.6148 37 1 -2.2334 -12.6267 -2.9501 38 1 0.7555 -13.1376 -2.1484 39 1 -0.2626 -14.1922 -3.2680 40 1 -0.5824 -12.2214 -4.8327 41 1 0.4356 -11.1672 -3.7129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887459140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = 152.974726 kcal Electronic energy + Delta-G solvation = -19964.553472 eV Core-core repulsion = 16883.580025 eV Total energy + Delta-G solvation = -3080.973447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.87793 -39.25111 -36.45608 -35.13728 -34.22532 -31.80002 -30.61296 -29.74471 -25.77885 -25.28342 -23.92866 -22.84919 -22.76774 -21.56275 -21.20698 -20.32888 -20.11815 -17.35543 -16.84561 -16.49688 -16.00378 -15.43504 -14.82361 -14.63501 -14.60763 -14.14203 -13.70608 -13.43041 -13.21039 -12.73992 -12.60466 -12.15051 -12.03751 -11.90068 -11.74345 -11.62260 -11.26637 -11.15733 -10.98761 -10.84876 -10.76487 -10.37443 -10.24553 -10.10068 -9.96143 -9.75669 -9.61707 -8.84368 -8.77191 -6.88052 -5.70416 -2.99964 1.91658 2.50664 2.98040 3.12274 3.48656 3.52674 3.54176 3.55212 4.04042 4.23446 4.36618 4.47594 4.58869 4.62109 4.66219 4.73885 4.83026 4.84841 4.98867 5.06152 5.10406 5.23996 5.34639 5.41355 5.46985 5.49809 5.55347 5.56375 5.68337 5.71018 5.74129 5.80963 5.90893 5.98693 6.22119 6.47145 6.71331 6.81418 6.87819 7.73728 8.46932 8.91808 9.58437 10.14779 10.50856 11.52345 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.043535 B = 0.002458 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.009623 B =11388.801344 C =11549.926020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.007 4.007 12 C -0.045 4.045 13 N -0.299 5.299 14 C 0.122 3.878 15 C -0.101 4.101 16 C -0.144 4.144 17 H 0.110 0.890 18 C -0.168 4.168 19 C -0.119 4.119 20 H 0.106 0.894 21 C -0.126 4.126 22 C -0.177 4.177 23 C -0.177 4.177 24 N -0.096 5.096 25 N -0.256 5.256 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.188 0.812 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -26.691 -8.871 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.145 4.145 12 C -0.196 4.196 13 N -0.093 5.093 14 C 0.001 3.999 15 C -0.139 4.139 16 C -0.163 4.163 17 H 0.128 0.872 18 C -0.205 4.205 19 C -0.137 4.137 20 H 0.124 0.876 21 C -0.144 4.144 22 C -0.214 4.214 23 C -0.214 4.214 24 N -0.076 5.076 25 N -0.124 5.124 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.205 0.795 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.858 -27.126 -7.581 28.429 hybrid contribution 0.418 1.252 -1.167 1.762 sum -3.441 -25.874 -8.748 27.529 Atomic orbital electron populations 1.69676 1.05172 1.25730 1.57534 1.24768 0.95535 0.97733 1.02985 0.86222 0.78447 0.83379 0.77850 1.21258 1.21757 1.21191 1.19193 0.91066 0.83856 1.42939 0.90939 1.42309 1.05988 0.99271 1.89509 1.18937 0.90081 0.81420 0.99177 1.22462 1.02795 1.00777 0.88457 1.23420 0.98944 0.95182 1.02022 1.47301 1.30642 1.24603 1.06776 1.22012 0.97188 0.86630 0.94115 1.21449 1.00834 0.91101 1.00530 1.22263 1.02412 0.91447 1.00173 0.87206 1.23210 0.92795 1.03309 1.01169 1.21856 1.00547 0.92540 0.98736 0.87573 1.21760 0.95154 1.00827 0.96652 1.22985 1.00164 0.95055 1.03231 1.22978 1.02869 1.00444 0.95111 1.78201 1.19558 1.17222 0.92576 1.75088 1.06657 1.04232 1.26385 0.93486 0.78107 0.94538 0.94383 0.79530 0.88418 0.87872 0.90760 0.89771 0.88341 0.88582 0.87700 0.88713 0.88837 0.88866 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.44 5.59 -61.08 -0.34 -19.78 16 10 C 0.23 5.04 6.82 -5.19 -0.04 5.00 16 11 C -0.01 -0.13 6.62 -82.78 -0.55 -0.68 16 12 C -0.04 -0.70 11.50 -17.05 -0.20 -0.90 16 13 N -0.30 -4.31 3.44 -61.26 -0.21 -4.52 16 14 C 0.12 1.11 6.41 -4.04 -0.03 1.08 16 15 C -0.10 -0.82 5.62 -26.73 -0.15 -0.97 16 16 C -0.14 -0.93 5.38 -90.62 -0.49 -1.42 16 17 H 0.11 0.63 8.07 -51.93 -0.42 0.21 16 18 C -0.17 -1.07 9.90 -26.73 -0.26 -1.34 16 19 C -0.12 -0.78 5.59 -90.62 -0.51 -1.29 16 20 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.13 -0.77 5.87 -90.62 -0.53 -1.30 16 22 C -0.18 -1.03 10.25 -26.73 -0.27 -1.31 16 23 C -0.18 -1.04 10.17 -26.74 -0.27 -1.31 16 24 N -0.10 -1.75 12.91 60.35 0.78 -0.97 16 25 N -0.26 -5.40 12.41 33.29 0.41 -4.98 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.39 11.13 7.66 -40.82 -0.31 10.82 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.19 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 35 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -34.22 351.36 -8.50 -42.71 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.59 Total: 4.88 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -3.54 Total: -11.97 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 1.36 Total: -58.67 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.22 -8.50 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887459140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.688 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds