Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75262 * 95.00251 * 11 10 9 13 13 N 1.35314 * 106.17487 * 180.02562 * 12 11 10 14 14 C 1.46506 * 125.86473 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46903 * 124.99998 * 14 13 12 16 16 C 1.53006 * 109.46928 * 179.97438 * 15 14 13 17 17 H 1.08995 * 115.54674 * 29.32712 * 16 15 14 18 18 C 1.53000 * 117.49594 * 243.62252 * 16 15 14 19 19 C 1.53001 * 117.49842 * 174.99995 * 16 15 14 20 20 H 1.08996 * 117.49848 * 359.97438 * 19 16 15 21 21 C 1.52998 * 117.49592 * 215.00361 * 19 16 15 22 22 C 1.53005 * 117.49951 * 128.62240 * 21 19 16 23 23 C 1.52994 * 59.99813 * 252.50808 * 22 21 19 24 24 N 1.28716 * 108.26328 * 0.02562 * 13 12 11 25 25 N 1.28625 * 110.17841 * 359.72204 * 24 13 12 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.08005 * 126.90953 * 0.03147 * 12 11 10 31 31 H 1.09006 * 109.46850 * 244.99830 * 14 13 12 32 32 H 1.08999 * 109.47059 * 4.99628 * 14 13 12 33 33 H 1.09006 * 109.47230 * 299.99599 * 15 14 13 34 34 H 1.08999 * 109.47565 * 59.99939 * 15 14 13 35 35 H 1.09000 * 117.50363 * 359.97438 * 18 16 15 36 36 H 1.09001 * 117.49571 * 145.02480 * 18 16 15 37 37 H 1.08996 * 115.54758 * 274.32360 * 21 19 16 38 38 H 1.09000 * 117.49426 * 359.97438 * 22 21 19 39 39 H 1.09000 * 117.49780 * 145.01680 * 22 21 19 40 40 H 1.09006 * 117.50006 * 252.51142 * 23 22 21 41 41 H 1.09001 * 117.50146 * 107.49224 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0786 -4.8022 -0.0109 12 6 0.6204 -5.4766 -1.0913 13 7 -0.2332 -6.4133 -0.6169 14 6 -0.9755 -7.3853 -1.4234 15 6 -0.6800 -8.7989 -0.9180 16 6 -1.4557 -9.8140 -1.7599 17 1 -1.6516 -9.5181 -2.7905 18 6 -2.5205 -10.6532 -1.0507 19 6 -1.2033 -11.2981 -1.4868 20 1 -0.4843 -11.5513 -0.7077 21 6 -1.2453 -12.2533 -2.6813 22 6 -0.0566 -13.1973 -2.8731 23 6 -0.2495 -12.0087 -3.8168 24 7 -0.2808 -6.3034 0.6647 25 7 0.4944 -5.3553 1.0579 26 1 -0.4850 0.8400 0.0040 27 1 0.3555 -2.3880 -0.0021 28 1 2.6812 -3.7126 -0.9040 29 1 2.6880 -3.7165 0.8760 30 1 0.8833 -5.3022 -2.1242 31 1 -2.0439 -7.1857 -1.3405 32 1 -0.6699 -7.3009 -2.4663 33 1 0.3885 -8.9984 -1.0009 34 1 -0.9855 -8.8832 0.1249 35 1 -2.6681 -10.4824 0.0157 36 1 -3.4173 -10.9095 -1.6148 37 1 -2.2334 -12.6267 -2.9501 38 1 0.7555 -13.1376 -2.1484 39 1 -0.2626 -14.1922 -3.2680 40 1 -0.5824 -12.2214 -4.8327 41 1 0.4356 -11.1672 -3.7129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887459140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = 131.972760 kcal Electronic energy + Delta-G solvation = -19965.464185 eV Core-core repulsion = 16883.580025 eV Total energy + Delta-G solvation = -3081.884160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.19068 -39.76626 -37.24278 -36.64173 -35.46371 -33.65234 -31.71912 -31.32214 -27.59214 -26.16171 -24.76488 -24.44339 -23.27203 -22.76648 -22.12281 -21.30369 -20.72412 -19.31300 -18.08937 -17.49841 -16.64871 -16.54624 -16.06640 -15.88588 -15.73658 -15.31096 -15.09501 -14.79206 -14.30355 -14.03679 -13.68391 -13.53014 -13.01718 -12.77325 -12.68517 -12.53851 -12.42227 -12.31232 -12.17016 -12.10565 -11.87813 -11.76200 -11.72963 -11.47845 -11.01612 -10.93687 -10.73117 -10.34035 -10.17302 -9.01539 -7.92457 -5.23127 0.66809 1.44876 1.50327 1.53802 1.54777 1.60960 2.60506 2.62380 3.07449 3.37982 3.40905 3.48552 3.67577 3.83602 3.91416 4.03342 4.06088 4.15051 4.21021 4.22180 4.27652 4.29825 4.40414 4.46291 4.58666 4.64091 4.81993 4.82679 4.90295 4.93147 4.97971 5.05730 5.16656 5.21869 5.26816 5.27931 5.31819 5.41642 5.51196 5.73743 6.27016 7.33592 7.55406 8.05112 8.31347 9.31355 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.043535 B = 0.002458 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.009623 B =11388.801344 C =11549.926020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.085 0.915 9 N -0.740 5.740 10 C 0.236 3.764 11 C -0.041 4.041 12 C -0.021 4.021 13 N -0.283 5.283 14 C 0.111 3.889 15 C -0.092 4.092 16 C -0.136 4.136 17 H 0.126 0.874 18 C -0.170 4.170 19 C -0.122 4.122 20 H 0.097 0.903 21 C -0.128 4.128 22 C -0.183 4.183 23 C -0.176 4.176 24 N -0.113 5.113 25 N -0.303 5.303 26 H 0.251 0.749 27 H 0.370 0.630 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.229 0.771 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -27.528 -10.987 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.103 0.897 9 N -0.382 5.382 10 C 0.108 3.892 11 C -0.180 4.180 12 C -0.173 4.173 13 N -0.077 5.077 14 C -0.008 4.008 15 C -0.131 4.131 16 C -0.155 4.155 17 H 0.144 0.856 18 C -0.206 4.206 19 C -0.140 4.140 20 H 0.115 0.885 21 C -0.146 4.146 22 C -0.220 4.220 23 C -0.213 4.213 24 N -0.092 5.092 25 N -0.170 5.170 26 H 0.059 0.941 27 H 0.201 0.799 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.245 0.755 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.419 -28.026 -9.693 29.851 hybrid contribution 0.276 1.344 -0.535 1.472 sum -3.143 -26.683 -10.228 28.748 Atomic orbital electron populations 1.69857 1.06912 1.26166 1.59494 1.25681 0.96430 1.01459 1.03589 0.85098 0.77047 0.78516 0.78389 1.19667 1.22390 1.20495 1.19677 0.91813 0.84806 1.41318 0.89740 1.42522 1.05467 1.00725 1.89522 1.18960 0.90373 0.80286 0.99560 1.22313 1.04254 1.01637 0.89819 1.23890 0.97131 0.93549 1.02695 1.47715 1.29589 1.24397 1.06020 1.22567 0.97397 0.85612 0.95227 1.21331 1.00758 0.91184 0.99781 1.22209 1.02003 0.90789 1.00504 0.85601 1.23253 0.93171 1.03212 1.01003 1.21847 1.00468 0.92815 0.98854 0.88517 1.21776 0.95508 1.00840 0.96525 1.23051 1.00020 0.95583 1.03332 1.23022 1.02562 1.00237 0.95431 1.78097 1.19613 1.16981 0.94516 1.75016 1.08160 1.05713 1.28120 0.94070 0.79870 0.91890 0.95503 0.75458 0.87321 0.84030 0.91244 0.91725 0.89041 0.87536 0.87145 0.89128 0.88065 0.88018 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.74 -39.82 5.59 -347.16 -1.94 -41.76 16 10 C 0.24 10.12 6.82 85.63 0.58 10.71 16 11 C -0.04 -1.61 6.62 41.60 0.28 -1.34 16 12 C -0.02 -0.59 11.50 83.49 0.96 0.37 16 13 N -0.28 -7.62 3.44 -347.71 -1.20 -8.82 16 14 C 0.11 1.69 6.41 86.38 0.55 2.24 16 15 C -0.09 -1.35 5.62 30.60 0.17 -1.18 16 16 C -0.14 -1.46 5.38 -10.79 -0.06 -1.52 16 17 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 18 C -0.17 -1.92 9.90 30.60 0.30 -1.61 16 19 C -0.12 -1.44 5.59 -10.79 -0.06 -1.50 16 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.13 -1.34 5.87 -10.79 -0.06 -1.40 16 22 C -0.18 -1.88 10.25 30.59 0.31 -1.57 16 23 C -0.18 -1.71 10.17 30.59 0.31 -1.40 16 24 N -0.11 -4.07 12.91 37.02 0.48 -3.60 16 25 N -0.30 -12.96 12.41 -48.60 -0.60 -13.56 16 26 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.37 21.81 7.66 -92.71 -0.71 21.10 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.23 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.14 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.06 1.21 7.85 -2.39 -0.02 1.20 16 35 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -75.14 351.36 3.95 -71.19 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.30 Total: 24.73 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.60 Total: -15.59 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -2.98 Total: -129.19 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -75.14 3.95 -71.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887459140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.164 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds