Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 N 1.30495 * 125.65119 * 269.69822 * 14 13 12 16 16 C 1.34126 * 109.25404 * 179.88816 * 15 14 13 17 17 C 1.34668 * 108.02250 * 0.36761 * 16 15 14 18 18 N 1.35044 * 125.64887 * 89.99563 * 14 13 12 19 19 C 1.46498 * 126.39724 * 359.95139 * 18 14 13 20 20 C 1.52998 * 117.50112 * 188.74221 * 19 18 14 21 21 C 1.52996 * 117.50127 * 120.08406 * 19 18 14 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.08007 * 125.98830 * 180.11281 * 16 15 14 32 32 H 1.07992 * 126.58882 * 179.74355 * 17 16 15 33 33 H 1.09004 * 115.55305 * 334.41129 * 19 18 14 34 34 H 1.09007 * 117.49559 * 0.02562 * 20 19 18 35 35 H 1.08997 * 117.50404 * 145.01550 * 20 19 18 36 36 H 1.09000 * 117.50320 * 214.97866 * 21 19 18 37 37 H 1.08997 * 117.49816 * 359.97438 * 21 19 18 38 38 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 39 39 H 1.09006 * 109.50970 * 183.07886 * 22 12 11 40 40 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 41 41 H 1.09003 * 109.62806 * 111.27869 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 7 -1.5017 -6.1436 -3.6238 16 6 -2.3050 -5.7842 -4.6360 17 6 -1.6164 -4.9504 -5.4386 18 7 -0.3724 -4.8065 -4.8862 19 6 0.7236 -3.9896 -5.4132 20 6 0.4100 -3.0586 -6.5861 21 6 1.2429 -4.3226 -6.8132 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 -3.3241 -6.1100 -4.7839 32 1 -1.9764 -4.4852 -6.3443 33 1 1.4488 -3.6441 -4.6764 34 1 -0.6119 -3.0537 -6.9654 35 1 0.9290 -2.1008 -6.6212 36 1 2.3097 -4.1958 -6.9977 37 1 0.7695 -5.1497 -7.3421 38 1 2.8210 -4.2714 -1.6443 39 1 2.2362 -5.6182 -0.6374 40 1 2.7786 -3.5350 0.6861 41 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891901576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = 115.970090 kcal Electronic energy + Delta-G solvation = -22242.819765 eV Core-core repulsion = 19160.241677 eV Total energy + Delta-G solvation = -3082.578088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.22068 -39.64209 -38.24279 -36.33597 -33.53614 -32.78208 -31.67544 -31.19936 -28.66457 -26.38924 -24.50501 -24.30247 -24.07972 -23.52948 -21.86691 -21.00579 -20.20309 -18.74719 -18.48203 -17.31155 -16.58865 -16.27386 -15.99726 -15.83954 -15.48701 -15.30023 -15.15237 -14.79291 -14.68362 -14.52145 -13.74976 -13.58412 -13.28653 -13.08544 -12.92439 -12.63986 -12.56979 -12.36197 -12.33711 -12.10189 -11.95047 -11.73546 -11.65094 -11.48882 -10.89695 -10.61729 -10.27846 -9.47738 -9.17932 -8.71209 -7.89004 -5.35121 0.97501 1.46288 1.46457 1.56722 1.71088 2.12478 2.49574 2.68001 3.07302 3.26467 3.35273 3.46683 3.63192 3.70483 3.76962 3.86720 4.15546 4.26508 4.32182 4.36498 4.51541 4.55446 4.58490 4.62445 4.65268 4.73289 4.80193 4.85408 4.90180 4.99815 5.04592 5.13984 5.31424 5.35435 5.58840 5.60690 5.83662 6.08735 6.10100 6.27325 6.34709 7.09903 7.16835 7.80420 8.36311 9.18098 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.005436 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.794064 B = 5149.612640 C = 5692.244762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.191 3.809 11 C 0.064 3.936 12 N -0.541 5.541 13 C 0.145 3.855 14 C 0.201 3.799 15 N -0.515 5.515 16 C -0.054 4.054 17 C -0.051 4.051 18 N -0.422 5.422 19 C 0.016 3.984 20 C -0.161 4.161 21 C -0.152 4.152 22 C 0.057 3.943 23 C 0.142 3.858 24 H 0.250 0.750 25 H -0.015 1.015 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.187 0.813 32 H 0.203 0.797 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -9.648 -15.959 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.065 3.935 11 C -0.065 4.065 12 N -0.267 5.267 13 C 0.016 3.984 14 C -0.061 4.061 15 N -0.234 5.234 16 C -0.201 4.201 17 C -0.184 4.184 18 N -0.103 5.103 19 C -0.088 4.088 20 C -0.198 4.198 21 C -0.190 4.190 22 C -0.072 4.072 23 C 0.016 3.984 24 H 0.059 0.941 25 H 0.003 0.997 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.204 0.796 32 H 0.220 0.780 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 2.746 -10.100 -15.022 18.309 hybrid contribution 0.533 1.812 -0.718 2.020 sum 3.279 -8.289 -15.740 18.089 Atomic orbital electron populations 1.70222 1.06894 1.25870 1.55561 1.25862 0.96011 1.01724 1.01250 0.85213 0.78079 0.79210 0.77640 1.20980 1.22379 1.19034 1.19586 0.93020 0.85769 1.40898 0.90925 1.44426 1.34159 1.02409 1.52582 1.20606 0.87701 0.96046 0.89135 1.22631 0.98225 0.89299 0.96395 1.61959 1.35746 1.05017 1.24017 1.20465 0.90809 0.97543 0.89576 1.23050 0.96988 0.96018 0.90025 1.70201 1.01751 1.26144 1.25320 1.22713 1.01320 1.02457 0.93641 1.23052 0.85268 1.06214 1.03903 1.44962 1.11405 1.34357 1.19563 1.22333 0.92647 1.00844 0.92979 1.23505 1.03023 0.96064 0.97219 1.23537 1.02187 0.99210 0.94083 1.22518 0.88760 1.00523 0.95359 1.21164 0.97716 0.85447 0.94041 0.94138 0.99653 0.92548 0.95362 0.92543 0.92039 0.87350 0.79575 0.77983 0.85263 0.86852 0.86167 0.85537 0.87527 0.94597 0.88101 0.91331 0.97051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 11.16 21.65 0.24 -56.83 16 2 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 3 Si 0.97 44.80 29.59 68.60 2.03 46.83 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.26 -14.57 9.63 84.03 0.81 -13.76 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 9 N -0.61 -31.77 3.03 -697.23 -2.11 -33.88 16 10 C 0.19 9.92 5.45 86.50 0.47 10.39 16 11 C 0.06 2.59 4.26 86.54 0.37 2.96 16 12 N -0.54 -19.70 4.77 -898.85 -4.29 -23.99 16 13 C 0.14 4.28 5.49 85.56 0.47 4.75 16 14 C 0.20 6.39 5.70 138.13 0.79 7.17 16 15 N -0.51 -17.94 11.25 -188.13 -2.12 -20.06 16 16 C -0.05 -1.51 11.87 83.52 0.99 -0.52 16 17 C -0.05 -1.23 10.87 83.09 0.90 -0.32 16 18 N -0.42 -11.13 2.38 -491.93 -1.17 -12.30 16 19 C 0.02 0.33 5.58 44.99 0.25 0.59 16 20 C -0.16 -2.51 9.99 30.62 0.31 -2.20 16 21 C -0.15 -2.15 10.41 30.61 0.32 -1.83 16 22 C 0.06 1.93 5.58 86.38 0.48 2.41 16 23 C 0.14 6.05 6.69 86.35 0.58 6.63 16 24 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.06 3.23 6.12 -2.39 -0.01 3.22 16 27 H 0.03 1.10 6.28 -2.39 -0.01 1.09 16 28 H 0.06 2.33 5.76 -2.38 -0.01 2.32 16 29 H 0.06 1.56 7.66 -2.38 -0.02 1.54 16 30 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.19 4.18 8.06 -2.91 -0.02 4.15 16 32 H 0.20 3.21 7.13 -2.91 -0.02 3.19 16 33 H 0.13 3.16 5.57 -2.38 -0.01 3.15 16 34 H 0.11 1.56 6.90 -2.38 -0.02 1.54 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 2.74 8.11 -2.38 -0.02 2.72 16 40 H 0.07 2.72 7.95 -2.39 -0.02 2.70 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -71.84 322.66 0.75 -71.09 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.02 Total: 15.48 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.15 Total: 13.66 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -9.45 Total: -147.06 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.84 0.75 -71.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891901576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.060 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds