Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38880 * 120.75117 * 2 1 4 4 C 1.38018 * 119.33306 * 179.97438 * 3 2 1 5 5 N 1.31973 * 120.85342 * 0.02562 * 4 3 2 6 6 C 1.32400 * 121.62457 * 359.72572 * 5 4 3 7 7 N 1.38999 * 119.70524 * 180.29389 * 6 5 4 8 8 C 1.38302 * 120.74225 * 179.97438 * 2 1 3 9 9 C 1.50699 * 120.45391 * 359.97438 * 8 2 1 10 10 N 1.46898 * 109.47327 * 278.04071 * 9 8 2 11 11 C 1.46902 * 111.00066 * 183.01707 * 10 9 8 12 12 C 1.53233 * 109.33992 * 187.25423 * 11 10 9 13 13 N 1.47082 * 108.52352 * 306.16651 * 12 11 10 14 14 C 1.36936 * 120.88484 * 231.19031 * 13 12 11 15 15 H 1.07998 * 119.99703 * 26.64101 * 14 13 12 16 16 C 1.38812 * 119.99721 * 206.37009 * 14 13 12 17 17 N 1.31620 * 120.00404 * 16.16374 * 16 14 13 18 18 Si 1.86796 * 119.99596 * 196.16827 * 16 14 13 19 19 H 1.48502 * 109.47314 * 89.99683 * 18 16 14 20 20 H 1.48499 * 109.47315 * 209.99860 * 18 16 14 21 21 H 1.48503 * 109.47251 * 329.99947 * 18 16 14 22 22 C 1.47087 * 118.23325 * 51.45701 * 13 12 11 23 23 C 1.46902 * 110.99805 * 307.31757 * 10 9 8 24 24 H 1.08997 * 109.47231 * 264.91721 * 1 2 3 25 25 H 1.09000 * 109.47026 * 24.92023 * 1 2 3 26 26 H 1.09005 * 109.47329 * 144.91564 * 1 2 3 27 27 H 1.08001 * 120.32961 * 359.95972 * 3 2 1 28 28 H 1.07997 * 119.57242 * 179.97438 * 4 3 2 29 29 H 0.96999 * 119.99710 * 180.24438 * 7 6 5 30 30 H 0.96999 * 120.00374 * 0.23795 * 7 6 5 31 31 H 1.09004 * 109.47040 * 158.03884 * 9 8 2 32 32 H 1.08999 * 109.46961 * 38.04480 * 9 8 2 33 33 H 1.08996 * 109.49095 * 67.29459 * 11 10 9 34 34 H 1.09004 * 109.49014 * 307.21594 * 11 10 9 35 35 H 1.09002 * 109.62831 * 186.45875 * 12 11 10 36 36 H 1.09000 * 109.79347 * 65.97217 * 12 11 10 37 37 H 0.97000 * 119.99981 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.62754 * 68.25465 * 22 13 12 39 39 H 1.08999 * 109.62581 * 188.83196 * 22 13 12 40 40 H 1.08995 * 109.49415 * 292.70332 * 23 10 9 41 41 H 1.08993 * 109.49474 * 52.78701 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1935 0.0000 4 6 3.5969 1.1594 0.0005 5 7 4.2455 0.0100 0.0005 6 6 3.6048 -1.1487 0.0054 7 7 4.3281 -2.3356 0.0114 8 6 2.2140 -1.1887 0.0005 9 6 1.4879 -2.5092 0.0017 10 7 1.0827 -2.8441 1.3734 11 6 0.4338 -4.1610 1.4241 12 6 -0.1330 -4.3938 2.8285 13 7 0.9467 -4.1945 3.8072 14 6 1.2117 -5.1383 4.7633 15 1 0.9681 -6.1746 4.5813 16 6 1.7985 -4.7638 5.9643 17 7 1.8118 -3.4977 6.3237 18 14 2.5695 -6.0568 7.0702 19 1 4.0001 -6.2269 6.7102 20 1 2.4636 -5.6235 8.4866 21 1 1.8576 -7.3480 6.8930 22 6 1.7304 -2.9519 3.7353 23 6 2.2278 -2.7786 2.2914 24 1 -0.3633 -0.0910 1.0236 25 1 -0.3633 0.9320 -0.4330 26 1 -0.3634 -0.8410 -0.5907 27 1 1.6949 2.1389 -0.0007 28 1 4.1530 2.0852 0.0001 29 1 3.8630 -3.1869 0.0114 30 1 5.2978 -2.3127 0.0155 31 1 2.1479 -3.2871 -0.3824 32 1 0.6034 -2.4380 -0.6313 33 1 1.1651 -4.9358 1.1940 34 1 -0.3755 -4.1960 0.6947 35 1 -0.5137 -5.4122 2.9056 36 1 -0.9388 -3.6861 3.0233 37 1 2.2222 -3.2360 7.1627 38 1 1.1018 -2.1060 4.0133 39 1 2.5824 -3.0167 4.4121 40 1 2.9340 -3.5727 2.0492 41 1 2.7194 -1.8110 2.1911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893993789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = 50.736792 kcal Electronic energy + Delta-G solvation = -22246.852454 eV Core-core repulsion = 19161.445638 eV Total energy + Delta-G solvation = -3085.406816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51782 -39.44130 -36.54863 -35.89633 -34.54464 -32.98360 -31.59485 -30.62736 -29.03546 -28.28727 -26.32864 -24.39184 -24.20152 -22.69041 -22.08224 -20.79663 -18.86326 -18.47659 -17.80788 -17.10894 -16.51335 -16.33279 -15.92330 -15.57715 -15.44661 -15.28572 -15.21437 -14.81475 -14.64433 -14.12943 -13.85150 -13.50725 -13.29190 -13.22683 -13.02166 -12.67455 -12.63722 -12.37161 -12.20013 -12.05430 -11.88096 -11.67539 -11.52702 -11.42770 -10.60564 -10.30519 -10.17728 -9.23410 -8.74034 -8.62061 -7.87843 -5.33309 0.37527 0.62223 1.45041 1.46151 1.55338 2.49441 2.63236 2.88769 3.23433 3.29415 3.68438 3.70282 3.96837 4.05894 4.12903 4.23552 4.35793 4.36356 4.53948 4.58744 4.67830 4.70462 4.77181 4.83423 4.87814 4.91823 5.00194 5.05344 5.15336 5.20349 5.33245 5.37606 5.59662 5.64438 5.66764 5.85254 6.18194 6.26102 6.35192 6.37912 6.58862 7.11899 7.36645 7.83427 8.37371 9.18405 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.005095 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.628807 B = 5494.176288 C = 5853.626456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.008 3.992 3 C -0.241 4.241 4 C 0.135 3.865 5 N -0.578 5.578 6 C 0.399 3.601 7 N -0.847 5.847 8 C -0.214 4.214 9 C 0.111 3.889 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.143 3.857 13 N -0.612 5.612 14 C -0.261 4.261 15 H 0.071 0.929 16 C -0.054 4.054 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.266 1.266 22 C 0.189 3.811 23 C 0.068 3.932 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.178 0.822 29 H 0.408 0.592 30 H 0.406 0.594 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.016 0.984 37 H 0.249 0.751 38 H -0.009 1.009 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 5.736 -16.915 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.000 4.000 3 C -0.264 4.264 4 C -0.022 4.022 5 N -0.297 5.297 6 C 0.160 3.840 7 N -0.393 5.393 8 C -0.221 4.221 9 C -0.017 4.017 10 N -0.254 5.254 11 C -0.075 4.075 12 C 0.018 3.982 13 N -0.336 5.336 14 C -0.391 4.391 15 H 0.088 0.912 16 C -0.249 4.249 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.222 1.222 21 H -0.190 1.190 22 C 0.063 3.937 23 C -0.061 4.061 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.171 0.829 28 H 0.195 0.805 29 H 0.240 0.760 30 H 0.235 0.765 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.364 6.112 -16.628 17.719 hybrid contribution 0.521 -1.303 0.954 1.696 sum 0.885 4.809 -15.674 16.419 Atomic orbital electron populations 1.20787 0.88955 1.03685 1.02864 1.20259 0.97635 0.91729 0.90404 1.21996 0.95261 0.99148 1.09982 1.22813 0.92455 0.95059 0.91827 1.67196 1.41457 0.98065 1.23024 1.18382 0.88286 0.87141 0.90145 1.42373 1.09686 1.04350 1.82842 1.19953 0.92017 0.96713 1.13450 1.20844 0.98894 0.91939 0.90005 1.61985 1.27752 1.29493 1.06131 1.22502 0.98483 0.88401 0.98092 1.21149 0.89904 0.98624 0.88540 1.44407 1.35471 1.19503 1.34246 1.19577 1.36282 0.89156 0.94094 0.91159 1.25808 1.03118 0.97924 0.98046 1.70195 1.48307 1.16988 1.22978 0.85245 0.78462 0.79088 0.77539 1.21383 1.22238 1.19044 1.20654 0.94320 0.86492 0.92258 1.22442 0.91364 0.98333 0.94001 0.91291 0.89687 0.90320 0.82871 0.80541 0.75968 0.76469 0.94584 0.88034 0.95490 0.88171 0.91974 0.96601 0.94218 0.99115 0.92974 0.96315 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.59 71.24 0.68 -1.52 16 2 C 0.01 0.20 5.91 -19.69 -0.12 0.08 16 3 C -0.24 -5.54 9.79 22.37 0.22 -5.32 16 4 C 0.13 3.30 11.17 84.62 0.95 4.24 16 5 N -0.58 -17.01 10.39 -193.27 -2.01 -19.02 16 6 C 0.40 11.53 6.50 133.07 0.86 12.39 16 7 N -0.85 -21.08 8.56 -55.43 -0.47 -21.55 16 8 C -0.21 -5.91 4.13 -19.63 -0.08 -5.99 16 9 C 0.11 2.86 4.47 85.56 0.38 3.25 16 10 N -0.53 -17.42 4.72 -898.90 -4.24 -21.67 16 11 C 0.05 1.74 5.62 86.38 0.49 2.23 16 12 C 0.14 5.91 6.69 86.35 0.58 6.49 16 13 N -0.61 -31.44 3.03 -697.23 -2.12 -33.56 16 14 C -0.26 -14.54 9.64 84.03 0.81 -13.73 16 15 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 16 C -0.05 -3.07 4.96 84.86 0.42 -2.65 16 17 N -0.94 -57.09 11.06 21.65 0.24 -56.85 16 18 Si 0.97 45.52 29.58 68.60 2.03 47.55 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.19 9.66 5.45 86.50 0.47 10.13 16 23 C 0.07 2.72 4.62 86.54 0.40 3.12 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.34 8.07 -2.39 -0.02 1.32 16 26 H 0.08 1.48 6.42 -2.38 -0.02 1.46 16 27 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.41 9.56 6.03 -92.71 -0.56 9.00 16 30 H 0.41 9.07 8.95 -92.71 -0.83 8.24 16 31 H 0.04 0.88 6.19 -2.39 -0.01 0.86 16 32 H 0.10 2.21 6.49 -2.39 -0.02 2.20 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 35 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.05 3.02 6.05 -2.39 -0.01 3.01 16 40 H 0.02 0.75 7.70 -2.39 -0.02 0.73 16 41 H 0.06 2.28 5.85 -2.39 -0.01 2.27 16 Total: -1.00 -68.52 319.90 -0.85 -69.37 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.34 Total: 23.01 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.06 Total: 12.71 kcal Atomic # 7 Polarization: -144.04 SS G_CDS: -8.60 Total: -152.64 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.52 -0.85 -69.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893993789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.103 kcal (2) G-P(sol) polarization free energy of solvation -68.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds