Wall clock time and date at job start Mon Mar 30 2020 01:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47361 * 240.00028 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47288 * 120.00132 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 171.07497 * 7 2 1 9 9 C 1.50708 * 119.99475 * 351.07000 * 7 2 1 10 10 C 1.52992 * 115.55319 * 324.59763 * 9 7 2 11 11 N 1.46504 * 109.46726 * 305.38865 * 10 9 7 12 12 C 1.35314 * 125.86810 * 125.24148 * 11 10 9 13 13 C 1.35354 * 106.17578 * 180.11456 * 12 11 10 14 14 C 1.50700 * 126.74873 * 179.85119 * 13 12 11 15 15 H 1.08995 * 109.45656 * 4.73804 * 14 13 12 16 16 C 1.53037 * 109.46255 * 124.71259 * 14 13 12 17 17 C 1.53116 * 109.31181 * 179.21247 * 16 14 13 18 18 C 1.53120 * 109.15990 * 302.32465 * 17 16 14 19 19 C 1.53040 * 109.27728 * 57.65376 * 18 17 16 20 20 N 1.46836 * 109.52521 * 300.82085 * 19 18 17 21 21 N 1.33767 * 106.49458 * 359.58689 * 13 12 11 22 22 N 1.28638 * 108.88749 * 0.26657 * 21 13 12 23 23 C 1.52999 * 117.49378 * 110.26622 * 9 7 2 24 24 C 1.53001 * 117.49520 * 178.92398 * 9 7 2 25 25 H 0.97006 * 120.00210 * 5.02209 * 1 2 3 26 26 H 1.08999 * 109.47257 * 185.39396 * 10 9 7 27 27 H 1.08997 * 109.47566 * 65.38472 * 10 9 7 28 28 H 1.08005 * 126.90952 * 359.96564 * 12 11 10 29 29 H 1.09003 * 109.50262 * 59.25315 * 16 14 13 30 30 H 1.08999 * 109.50322 * 299.17438 * 16 14 13 31 31 H 1.08996 * 109.52418 * 62.23029 * 17 16 14 32 32 H 1.09002 * 109.52244 * 182.35898 * 17 16 14 33 33 H 1.09001 * 109.50253 * 177.59807 * 18 17 16 34 34 H 1.08997 * 109.50621 * 297.71205 * 18 17 16 35 35 H 1.09000 * 109.46069 * 60.84081 * 19 18 17 36 36 H 1.09003 * 109.45983 * 180.80333 * 19 18 17 37 37 H 1.00899 * 111.00067 * 297.64347 * 20 19 18 38 38 H 1.09001 * 117.49766 * 214.99558 * 23 9 7 39 39 H 1.08999 * 117.50313 * 0.02562 * 23 9 7 40 40 H 1.09004 * 117.49753 * 359.97438 * 24 9 7 41 41 H 1.08999 * 117.50046 * 145.00198 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0747 -1.1996 -0.1456 9 6 1.2647 -2.4913 0.2015 10 6 0.0797 -2.4318 1.1675 11 7 0.5256 -1.8919 2.4544 12 6 -0.0094 -0.8273 3.0957 13 6 0.7030 -0.6774 4.2368 14 6 0.4980 0.3747 5.2961 15 1 -0.3822 0.9692 5.0518 16 6 0.2958 -0.3015 6.6540 17 6 0.1075 0.7709 7.7306 18 6 1.3279 1.6957 7.7376 19 6 1.5007 2.3147 6.3487 20 7 1.6778 1.2485 5.3548 21 7 1.6208 -1.6505 4.2421 22 7 1.4894 -2.3527 3.1723 23 6 1.1514 -3.4341 -0.9982 24 6 2.0824 -3.7840 0.1654 25 1 -0.4851 0.8369 -0.0735 26 1 -0.3208 -3.4349 1.3135 27 1 -0.6955 -1.7878 0.7524 28 1 -0.8368 -0.2181 2.7628 29 1 1.1700 -0.9072 6.8927 30 1 -0.5884 -0.9377 6.6156 31 1 -0.7886 1.3520 7.5132 32 1 0.0050 0.2942 8.7055 33 1 1.1808 2.4867 8.4730 34 1 2.2183 1.1213 7.9934 35 1 0.6157 2.9003 6.0995 36 1 2.3772 2.9627 6.3464 37 1 2.5137 0.7151 5.5417 38 1 0.2327 -4.0120 -1.0992 39 1 1.6123 -3.1163 -1.9334 40 1 3.1555 -3.6960 -0.0049 41 1 1.7763 -4.5919 0.8299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899712486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:02 Heat of formation + Delta-G solvation = 95.088223 kcal Electronic energy + Delta-G solvation = -22157.882561 eV Core-core repulsion = 19074.398967 eV Total energy + Delta-G solvation = -3083.483594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.85548 -39.69170 -38.63638 -34.72461 -34.22242 -33.14649 -32.51605 -30.33523 -28.43393 -27.51335 -25.00910 -24.06531 -23.13438 -22.84070 -21.93664 -21.22715 -20.68958 -18.61012 -17.57102 -16.97128 -16.67999 -16.49359 -15.81753 -15.68936 -15.57939 -15.15101 -15.01685 -14.82688 -14.25380 -13.79451 -13.50678 -13.31012 -13.09520 -12.97176 -12.78717 -12.54562 -12.41029 -12.21847 -12.12658 -12.06640 -11.74454 -11.59119 -11.55436 -11.33731 -11.16005 -10.74186 -10.50390 -10.16088 -9.88713 -9.16529 -8.17730 -6.23038 1.05666 1.32395 1.38810 1.45637 1.76984 1.95861 2.35220 2.96892 3.44437 3.59455 3.62068 3.82826 3.97761 4.08663 4.10281 4.22133 4.23164 4.37135 4.42900 4.52795 4.53491 4.61575 4.67589 4.80490 4.87019 4.94347 4.95568 5.04579 5.11253 5.13878 5.16591 5.23230 5.30750 5.37159 5.46727 5.52987 5.55031 5.77612 6.08833 6.18651 6.32197 6.43630 6.69576 7.38287 7.89784 8.82397 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.006181 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.851492 B = 4529.066735 C = 5397.702532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.054 3.946 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.292 1.292 7 C -0.502 4.502 8 H 0.034 0.966 9 C 0.009 3.991 10 C 0.153 3.847 11 N -0.238 5.238 12 C -0.024 4.024 13 C -0.040 4.040 14 C 0.188 3.812 15 H 0.098 0.902 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.152 4.152 19 C 0.057 3.943 20 N -0.698 5.698 21 N -0.306 5.306 22 N -0.113 5.113 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.269 0.731 26 H 0.078 0.922 27 H 0.136 0.864 28 H 0.188 0.812 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.339 0.661 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 2.616 11.336 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.148 4.148 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.219 1.219 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.008 3.992 10 C 0.033 3.967 11 N -0.029 5.029 12 C -0.177 4.177 13 C -0.180 4.180 14 C 0.077 3.923 15 H 0.116 0.884 16 C -0.177 4.177 17 C -0.150 4.150 18 C -0.191 4.191 19 C -0.072 4.072 20 N -0.328 5.328 21 N -0.171 5.171 22 N -0.092 5.092 23 C -0.216 4.216 24 C -0.225 4.225 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.154 0.846 28 H 0.205 0.795 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.157 0.843 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.238 2.051 10.926 11.898 hybrid contribution 0.134 0.990 0.038 1.000 sum -4.104 3.041 10.964 12.095 Atomic orbital electron populations 1.69656 1.05698 1.27669 1.49835 1.25143 0.95631 1.00220 0.93804 0.86035 0.79205 0.81277 0.77686 1.20384 1.19663 1.21904 1.20512 0.92755 0.90702 1.49978 0.94807 1.19086 0.95007 0.89702 0.95445 1.21974 0.98904 0.98822 0.76986 1.47107 1.19714 1.19769 1.16338 1.23442 1.04893 0.95042 0.94364 1.22021 0.97275 1.00087 0.98657 1.19634 0.94123 0.88643 0.89930 0.88405 1.22105 1.02032 0.98601 0.94926 1.21549 0.98621 0.96516 0.98315 1.22219 0.98331 0.99908 0.98638 1.22108 1.02845 0.93423 0.88785 1.60622 1.04757 1.15717 1.51664 1.74776 1.21553 1.06577 1.14211 1.78075 1.07971 1.23059 1.00144 1.23000 1.00635 1.04654 0.93296 1.22858 0.96689 1.00360 1.02559 0.92104 0.90357 0.84619 0.79469 0.92891 0.91613 0.90817 0.90814 0.89543 0.92595 0.90365 0.90241 0.84313 0.88684 0.90621 0.91493 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.71 10.45 21.45 0.22 -43.49 16 2 C 0.05 2.77 5.20 84.66 0.44 3.21 16 3 Si 0.93 43.83 29.55 68.60 2.03 45.86 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 7 C -0.50 -26.83 8.74 25.60 0.22 -26.61 16 8 H 0.03 1.93 7.83 -2.91 -0.02 1.91 16 9 C 0.01 0.40 1.89 -52.93 -0.10 0.30 16 10 C 0.15 6.51 5.52 86.38 0.48 6.98 16 11 N -0.24 -10.50 3.05 -347.73 -1.06 -11.56 16 12 C -0.02 -0.96 11.26 83.49 0.94 -0.02 16 13 C -0.04 -1.57 6.03 41.60 0.25 -1.32 16 14 C 0.19 5.73 2.92 44.18 0.13 5.85 16 15 H 0.10 2.73 8.12 -2.39 -0.02 2.71 16 16 C -0.14 -3.49 5.33 30.65 0.16 -3.33 16 17 C -0.11 -2.13 6.00 30.67 0.18 -1.94 16 18 C -0.15 -2.79 6.08 30.65 0.19 -2.60 16 19 C 0.06 1.28 6.55 86.33 0.57 1.84 16 20 N -0.70 -21.45 6.49 -495.39 -3.22 -24.67 16 21 N -0.31 -13.57 12.40 -48.60 -0.60 -14.18 16 22 N -0.11 -5.33 12.94 37.02 0.48 -4.85 16 23 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 24 C -0.19 -7.86 9.93 30.62 0.30 -7.56 16 25 H 0.27 12.69 8.32 -92.70 -0.77 11.92 16 26 H 0.08 2.91 8.09 -2.39 -0.02 2.89 16 27 H 0.14 5.93 5.88 -2.39 -0.01 5.92 16 28 H 0.19 6.91 8.06 -2.91 -0.02 6.88 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.34 11.15 8.79 -89.69 -0.79 10.36 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 41 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -58.50 334.41 2.15 -56.35 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.23 Total: 28.61 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 4.07 Total: -32.08 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -4.18 Total: -98.74 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.50 2.15 -56.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899712486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.438 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds