Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00651 * 2 1 4 4 H 1.48498 * 109.47357 * 264.78415 * 3 2 1 5 5 H 1.48500 * 109.46770 * 24.77947 * 3 2 1 6 6 H 1.48496 * 109.47366 * 144.77678 * 3 2 1 7 7 C 1.37881 * 119.99164 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00686 * 5.76720 * 7 2 1 9 9 C 1.50699 * 119.99624 * 185.77448 * 7 2 1 10 10 H 1.09003 * 109.53626 * 335.26534 * 9 7 2 11 11 C 1.53120 * 109.50789 * 95.36265 * 9 7 2 12 12 C 1.53111 * 109.16490 * 177.59532 * 11 9 7 13 13 C 1.53041 * 109.27944 * 302.34946 * 12 11 9 14 14 N 1.46840 * 109.52276 * 59.17772 * 13 12 11 15 15 C 1.46899 * 111.00042 * 174.16355 * 14 13 12 16 16 C 1.50703 * 109.47227 * 294.20836 * 15 14 13 17 17 C 1.35355 * 126.75038 * 94.99957 * 16 15 14 18 18 N 1.35309 * 106.17156 * 179.97438 * 17 16 15 19 19 C 1.46500 * 125.86601 * 180.02562 * 18 17 16 20 20 C 1.53002 * 117.49947 * 343.74472 * 19 18 17 21 21 C 1.53005 * 117.49884 * 275.08704 * 19 18 17 22 22 N 1.28714 * 108.26779 * 359.97438 * 18 17 16 23 23 N 1.28638 * 110.17769 * 359.97438 * 22 18 17 24 24 C 1.46849 * 111.19863 * 298.25840 * 14 13 12 25 25 H 0.97003 * 119.99227 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52509 * 297.50439 * 11 9 7 27 27 H 1.09007 * 109.51660 * 57.62455 * 11 9 7 28 28 H 1.09000 * 109.50568 * 62.28962 * 12 11 9 29 29 H 1.08997 * 109.50453 * 182.36697 * 12 11 9 30 30 H 1.08999 * 109.46209 * 299.16393 * 13 12 11 31 31 H 1.08999 * 109.46318 * 179.19303 * 13 12 11 32 32 H 1.09002 * 109.47398 * 174.21220 * 15 14 13 33 33 H 1.09006 * 109.47419 * 54.20924 * 15 14 13 34 34 H 1.08000 * 126.90902 * 359.97438 * 17 16 15 35 35 H 1.08998 * 115.55384 * 129.41887 * 19 18 17 36 36 H 1.09004 * 117.49851 * 0.02562 * 20 19 18 37 37 H 1.08995 * 117.50099 * 145.01836 * 20 19 18 38 38 H 1.08996 * 117.50061 * 214.97530 * 21 19 18 39 39 H 1.09002 * 117.49657 * 359.97438 * 21 19 18 40 40 H 1.09006 * 109.46443 * 181.75766 * 24 14 13 41 41 H 1.08996 * 109.46348 * 301.72651 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 2.6071 1.9827 -1.3942 5 1 1.3960 2.6819 0.5868 6 1 3.4873 1.4743 0.8075 7 6 2.0044 -1.1942 -0.0005 8 1 1.4685 -2.1270 -0.0949 9 6 3.5057 -1.1977 0.1308 10 1 3.9043 -0.2449 -0.2178 11 6 3.8901 -1.4065 1.5982 12 6 5.4155 -1.4688 1.7141 13 6 5.9441 -2.5977 0.8262 14 7 5.5509 -2.3513 -0.5669 15 6 6.1573 -3.3404 -1.4679 16 6 7.6538 -3.1623 -1.4753 17 6 8.5530 -3.8337 -0.7184 18 7 9.7692 -3.3480 -1.0586 19 6 11.0525 -3.7769 -0.4971 20 6 11.0214 -4.5720 0.8098 21 6 11.5074 -3.1205 0.8079 22 7 9.6051 -2.4451 -1.9612 23 7 8.3548 -2.3110 -2.2325 24 6 4.0896 -2.3344 -0.7112 25 1 -0.4849 0.8401 0.0004 26 1 3.5130 -0.5762 2.1953 27 1 3.4579 -2.3401 1.9585 28 1 5.8442 -0.5203 1.3906 29 1 5.6942 -1.6594 2.7505 30 1 5.5259 -3.5476 1.1590 31 1 7.0312 -2.6355 0.8955 32 1 5.7697 -3.1988 -2.4768 33 1 5.9127 -4.3449 -1.1224 34 1 8.3421 -4.6023 0.0103 35 1 11.8215 -4.0353 -1.2251 36 1 10.0461 -4.7762 1.2515 37 1 11.7700 -5.3532 0.9416 38 1 12.5756 -2.9473 0.9386 39 1 10.8520 -2.3691 1.2484 40 1 3.8298 -2.1809 -1.7586 41 1 3.6801 -3.2855 -0.3712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906312418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = 103.925264 kcal Electronic energy + Delta-G solvation = -21478.861882 eV Core-core repulsion = 18395.761491 eV Total energy + Delta-G solvation = -3083.100391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.25970 -39.89316 -38.50712 -35.82028 -34.29999 -33.33689 -32.12029 -31.84260 -27.74030 -26.91490 -25.36085 -24.05064 -23.48723 -23.06470 -22.16101 -21.42948 -20.40502 -18.99025 -18.50705 -17.52777 -16.89337 -16.23901 -16.03761 -15.83265 -15.58599 -15.30724 -15.01971 -14.72473 -14.48417 -14.11237 -13.85772 -13.52602 -12.99869 -12.90411 -12.83519 -12.66553 -12.56232 -12.39060 -12.27820 -12.03159 -11.82582 -11.75257 -11.44849 -11.29421 -11.08676 -10.85269 -10.73410 -10.62476 -10.20734 -9.12337 -8.28569 -6.30190 0.59105 1.34434 1.35947 1.37076 1.47047 1.47742 2.35967 2.48975 3.05085 3.17701 3.30702 3.51694 3.67552 3.86108 3.90644 4.07906 4.11523 4.19462 4.32065 4.44537 4.47753 4.59309 4.62765 4.67417 4.73366 4.83927 4.86688 4.88563 4.94932 5.02314 5.06733 5.09499 5.14683 5.21231 5.26880 5.58157 5.67162 5.72403 5.78103 6.18475 6.28503 6.40893 6.77875 7.36006 7.53746 8.88308 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030602 B = 0.003987 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.741551 B = 7020.822703 C = 7132.429510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.017 3.983 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.510 4.510 8 H 0.037 0.963 9 C 0.016 3.984 10 H 0.025 0.975 11 C -0.108 4.108 12 C -0.114 4.114 13 C 0.066 3.934 14 N -0.553 5.553 15 C 0.141 3.859 16 C -0.019 4.019 17 C -0.030 4.030 18 N -0.258 5.258 19 C 0.026 3.974 20 C -0.137 4.137 21 C -0.167 4.167 22 N -0.119 5.119 23 N -0.298 5.298 24 C 0.087 3.913 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.225 0.775 35 H 0.164 0.836 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.023 -12.641 4.770 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.549 4.549 8 H 0.055 0.945 9 C -0.003 4.003 10 H 0.044 0.956 11 C -0.146 4.146 12 C -0.151 4.151 13 C -0.061 4.061 14 N -0.278 5.278 15 C 0.012 3.988 16 C -0.159 4.159 17 C -0.182 4.182 18 N -0.051 5.051 19 C -0.075 4.075 20 C -0.175 4.175 21 C -0.205 4.205 22 N -0.097 5.097 23 N -0.164 5.164 24 C -0.041 4.041 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.242 0.758 35 H 0.181 0.819 36 H 0.132 0.868 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 26.778 -11.039 3.685 29.198 hybrid contribution -1.244 -0.326 0.532 1.392 sum 25.534 -11.365 4.218 28.265 Atomic orbital electron populations 1.70048 1.08010 1.27892 1.52956 1.25807 0.95308 1.02531 0.94352 0.85876 0.79231 0.79422 0.79174 1.19887 1.21342 1.17565 1.21249 0.91629 0.93066 1.48933 0.94509 1.19134 0.92939 0.95170 0.93066 0.95649 1.21711 0.94854 1.00176 0.97875 1.21618 0.95320 0.98631 0.99560 1.22036 0.99930 0.97129 0.87031 1.61818 1.09445 1.49734 1.06799 1.20219 0.85717 0.94649 0.98185 1.21969 0.97647 0.97702 0.98571 1.23758 0.83488 1.05440 1.05544 1.47002 1.08245 1.24121 1.25689 1.22647 0.83359 1.08886 0.92611 1.23686 1.05631 0.95524 0.92641 1.23574 1.04390 0.96970 0.95597 1.78251 1.13369 1.09769 1.08276 1.75057 0.97200 1.21016 1.23084 1.21913 0.84776 0.97692 0.99686 0.92610 0.94617 0.93041 0.93543 0.89799 0.93671 0.90349 0.90207 0.90587 0.75837 0.81904 0.86849 0.83338 0.84428 0.89442 0.92482 0.95335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.02 1.01 5.47 84.65 0.46 1.48 16 3 Si 0.94 46.67 27.02 68.60 1.85 48.53 16 4 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.25 -11.92 6.78 99.48 0.67 -11.24 16 7 C -0.51 -29.30 8.86 25.60 0.23 -29.07 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 9 C 0.02 0.77 1.95 -11.49 -0.02 0.75 16 10 H 0.03 1.28 5.25 -2.39 -0.01 1.26 16 11 C -0.11 -4.46 5.27 30.67 0.16 -4.30 16 12 C -0.11 -3.71 6.09 30.65 0.19 -3.52 16 13 C 0.07 1.91 5.29 86.33 0.46 2.37 16 14 N -0.55 -18.98 4.65 -900.93 -4.19 -23.17 16 15 C 0.14 4.02 5.53 85.56 0.47 4.49 16 16 C -0.02 -0.54 5.97 41.60 0.25 -0.29 16 17 C -0.03 -0.60 9.70 83.49 0.81 0.21 16 18 N -0.26 -5.41 3.67 -327.16 -1.20 -6.61 16 19 C 0.03 0.29 7.06 44.99 0.32 0.60 16 20 C -0.14 -0.53 9.99 30.62 0.31 -0.22 16 21 C -0.17 -1.30 10.46 30.62 0.32 -0.98 16 22 N -0.12 -3.59 13.17 37.02 0.49 -3.11 16 23 N -0.30 -10.29 12.41 -48.60 -0.60 -10.89 16 24 C 0.09 3.53 4.72 86.32 0.41 3.93 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.95 6.24 -2.39 -0.01 1.94 16 32 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16 33 H 0.08 1.71 8.12 -2.38 -0.02 1.69 16 34 H 0.23 2.37 7.27 -2.91 -0.02 2.35 16 35 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 0.39 7.02 -2.38 -0.02 0.37 16 37 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 2.42 8.02 -2.38 -0.02 2.40 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.88 329.91 1.98 -74.89 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.98 Total: 4.67 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.36 Total: -24.55 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -5.20 Total: -103.54 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.85 Total: 48.53 kcal Total: -76.88 1.98 -74.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906312418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.819 kcal (2) G-P(sol) polarization free energy of solvation -76.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds