Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47288 * 2 1 4 4 C 1.50701 * 109.47314 * 239.99500 * 2 1 3 5 5 N 1.31788 * 119.12287 * 101.65613 * 4 2 1 6 6 C 1.32330 * 120.81878 * 179.97438 * 5 4 2 7 7 C 1.38597 * 119.10491 * 359.97438 * 6 5 4 8 8 C 1.38597 * 118.39854 * 0.02562 * 7 6 5 9 9 N 1.31794 * 119.12114 * 281.63266 * 4 2 1 10 10 N 1.46905 * 109.46848 * 119.99293 * 2 1 3 11 11 C 1.46957 * 111.00229 * 306.73014 * 10 2 1 12 12 C 1.53054 * 109.36224 * 176.81370 * 11 10 2 13 13 N 1.46950 * 109.36676 * 58.40028 * 12 11 10 14 14 C 1.46901 * 111.00079 * 176.81114 * 13 12 11 15 15 C 1.50698 * 109.47018 * 60.03632 * 14 13 12 16 16 H 1.07998 * 120.00188 * 355.66182 * 15 14 13 17 17 C 1.37876 * 120.00080 * 175.67199 * 15 14 13 18 18 N 1.31518 * 120.00496 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99997 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47285 * 90.00262 * 19 17 15 21 21 H 1.48505 * 109.47284 * 210.00396 * 19 17 15 22 22 H 1.48500 * 109.47004 * 330.00394 * 19 17 15 23 23 C 1.46957 * 110.88114 * 300.67860 * 13 12 11 24 24 C 1.46964 * 110.99949 * 182.92569 * 10 2 1 25 25 H 1.09002 * 109.47442 * 300.00525 * 1 2 3 26 26 H 1.08995 * 109.47106 * 60.00708 * 1 2 3 27 27 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.44756 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.79680 * 179.72294 * 7 6 5 30 30 H 1.07998 * 120.44506 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.48692 * 296.77469 * 11 10 2 32 32 H 1.08996 * 109.48693 * 56.84230 * 11 10 2 33 33 H 1.08999 * 109.48507 * 298.42980 * 12 11 10 34 34 H 1.09002 * 109.50215 * 178.37949 * 12 11 10 35 35 H 1.09000 * 109.47400 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.46998 * 300.03898 * 14 13 12 37 37 H 0.96998 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.48703 * 299.35293 * 23 13 12 39 39 H 1.09001 * 109.49146 * 179.28901 * 23 13 12 40 40 H 1.09001 * 109.48757 * 303.16227 * 24 10 2 41 41 H 1.09003 * 109.48513 * 63.20427 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.4655 0.0023 -2.2508 6 6 2.9143 -0.5868 -3.3474 7 6 2.9252 -1.9712 -3.4128 8 6 2.4618 -2.6864 -2.3197 9 7 2.0273 -2.0282 -1.2571 10 7 2.0196 -0.6924 1.1996 11 6 1.4216 -0.1250 2.4162 12 6 1.8944 -0.9229 3.6337 13 7 3.3616 -0.8821 3.7032 14 6 3.8513 -1.5745 4.9027 15 6 3.4099 -3.0150 4.8666 16 1 2.7660 -3.3627 4.0723 17 6 3.8279 -3.8889 5.8477 18 7 3.4423 -5.1459 5.8165 19 14 4.9419 -3.2876 7.2213 20 1 4.1134 -2.8026 8.3542 21 1 5.8061 -4.4039 7.6823 22 1 5.7920 -2.1783 6.7193 23 6 3.9597 -1.4495 2.4866 24 6 3.4870 -0.6517 1.2691 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.2683 0.0032 -4.1799 29 1 3.2815 -2.4803 -4.2962 30 1 2.4550 -3.7662 -2.3353 31 1 1.7292 0.9154 2.5214 32 1 0.3351 -0.1780 2.3461 33 1 1.5633 -1.9573 3.5414 34 1 1.4750 -0.4863 4.5401 35 1 4.9400 -1.5289 4.9296 36 1 3.4452 -1.0923 5.7918 37 1 3.7366 -5.7608 6.5065 38 1 3.6521 -2.4899 2.3814 39 1 5.0461 -1.3965 2.5566 40 1 3.9063 -1.0886 0.3628 41 1 3.8181 0.3828 1.3610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930117060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = 74.347935 kcal Electronic energy + Delta-G solvation = -21815.266440 eV Core-core repulsion = 18730.883480 eV Total energy + Delta-G solvation = -3084.382960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16822 -38.80289 -35.89059 -33.73569 -32.90078 -31.95897 -30.79864 -29.89269 -27.67581 -25.39412 -24.65125 -24.26123 -22.63298 -21.63396 -20.69479 -19.03464 -17.58038 -17.12675 -16.72686 -15.93017 -15.44449 -14.97590 -14.44104 -14.33544 -14.19323 -14.08530 -14.01349 -13.55917 -13.25134 -12.62533 -12.39751 -12.32256 -12.04477 -11.66714 -11.48188 -11.14483 -10.93651 -10.85587 -10.79464 -10.59423 -10.43427 -10.15366 -10.05548 -9.81806 -9.57023 -9.41580 -9.20531 -8.55084 -7.99547 -7.14074 -6.05106 -4.04621 0.79650 1.04533 3.30465 3.37911 3.41647 3.60796 3.74978 3.98173 4.39191 4.43502 4.50081 4.85009 4.98536 4.99958 5.05249 5.20663 5.27698 5.36932 5.39262 5.63236 5.63923 5.70483 5.82506 5.83945 5.94252 6.01632 6.11451 6.21651 6.27545 6.36090 6.60636 6.85146 6.92870 6.94592 6.97705 7.10637 7.30813 7.40775 7.61374 8.10212 8.11888 8.14943 8.50721 8.99876 9.57571 11.07787 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025993 B = 0.004387 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.954226 B = 6381.106889 C = 6818.122959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.149 3.851 3 H 0.064 0.936 4 C 0.331 3.669 5 N -0.522 5.522 6 C 0.143 3.857 7 C -0.238 4.238 8 C 0.146 3.854 9 N -0.478 5.478 10 N -0.515 5.515 11 C 0.058 3.942 12 C 0.063 3.937 13 N -0.537 5.537 14 C 0.152 3.848 15 C -0.548 4.548 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.067 3.933 24 C 0.067 3.933 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 9.608 -17.330 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 H 0.081 0.919 4 C 0.063 3.937 5 N -0.236 5.236 6 C -0.023 4.023 7 C -0.260 4.260 8 C -0.020 4.020 9 N -0.191 5.191 10 N -0.241 5.241 11 C -0.070 4.070 12 C -0.066 4.066 13 N -0.261 5.261 14 C 0.026 3.974 15 C -0.587 4.587 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.062 4.062 24 C -0.061 4.061 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.162 0.838 30 H 0.185 0.815 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.248 9.913 -16.409 19.444 hybrid contribution 1.076 -0.499 -0.167 1.198 sum -2.172 9.414 -16.576 19.186 Atomic orbital electron populations 1.21881 0.92501 1.03506 1.02098 1.20226 0.95946 0.94211 0.85750 0.91868 1.23050 0.90349 0.86918 0.93395 1.68197 1.11985 1.42111 1.01342 1.23151 0.91616 0.92526 0.95048 1.22918 1.04382 0.96789 1.01880 1.23408 0.89606 1.01362 0.87672 1.68405 1.14639 1.09825 1.26230 1.62046 1.07106 1.54344 1.00615 1.22329 0.98851 0.96521 0.89266 1.21963 0.89460 0.99875 0.95290 1.62623 1.05855 1.54424 1.03172 1.20181 0.95775 0.93069 0.88404 1.21732 1.31626 0.93336 1.11991 0.90373 1.24969 0.95733 0.94682 0.97660 1.69936 1.45369 1.03829 1.34633 0.86829 0.81350 0.78677 0.82713 1.20236 1.21391 1.18883 1.21891 0.98129 0.97787 0.88425 1.22134 0.86860 0.98669 0.98485 0.90957 0.92399 0.90909 0.81767 0.83750 0.81526 0.94773 0.90403 0.92492 0.91287 0.95333 0.95784 0.92781 0.92547 0.91679 0.92362 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.72 37.16 0.32 -1.38 16 2 C 0.15 2.12 2.48 -68.86 -0.17 1.95 16 3 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 4 C 0.33 4.77 5.24 -157.20 -0.82 3.95 16 5 N -0.52 -6.86 10.32 -10.73 -0.11 -6.97 16 6 C 0.14 1.41 11.30 -17.20 -0.19 1.21 16 7 C -0.24 -2.11 10.17 -39.32 -0.40 -2.51 16 8 C 0.15 1.65 11.30 -17.20 -0.19 1.46 16 9 N -0.48 -7.11 9.91 -10.73 -0.11 -7.22 16 10 N -0.52 -8.54 4.33 -227.87 -0.99 -9.52 16 11 C 0.06 0.93 5.15 -3.77 -0.02 0.91 16 12 C 0.06 1.24 5.25 -3.77 -0.02 1.22 16 13 N -0.54 -11.53 4.92 -235.92 -1.16 -12.69 16 14 C 0.15 3.73 4.23 -4.98 -0.02 3.71 16 15 C -0.55 -15.45 8.22 -34.44 -0.28 -15.74 16 16 H 0.08 2.42 6.06 -52.49 -0.32 2.11 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 19 Si 0.88 21.62 27.56 -169.99 -4.68 16.93 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.26 -6.28 6.42 56.52 0.36 -5.92 16 23 C 0.07 1.37 5.31 -3.77 -0.02 1.35 16 24 C 0.07 1.17 5.42 -3.77 -0.02 1.15 16 25 H 0.07 0.78 6.25 -51.93 -0.32 0.46 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.10 6.02 -51.93 -0.31 0.78 16 33 H 0.06 1.31 6.50 -51.93 -0.34 0.97 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.03 0.71 6.88 -51.93 -0.36 0.35 16 36 H 0.02 0.59 7.79 -51.93 -0.40 0.18 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.06 1.34 6.89 -51.93 -0.36 0.98 16 39 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 40 H 0.06 1.02 6.97 -51.93 -0.36 0.66 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -32.69 322.72 -9.53 -42.21 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.17 Total: 0.04 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.94 Total: -0.74 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -1.59 Total: -63.31 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.68 Total: 16.93 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.69 -9.53 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930117060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.560 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds