Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47288 * 2 1 4 4 C 1.50701 * 109.47314 * 239.99500 * 2 1 3 5 5 N 1.31788 * 119.12287 * 101.65613 * 4 2 1 6 6 C 1.32330 * 120.81878 * 179.97438 * 5 4 2 7 7 C 1.38597 * 119.10491 * 359.97438 * 6 5 4 8 8 C 1.38597 * 118.39854 * 0.02562 * 7 6 5 9 9 N 1.31794 * 119.12114 * 281.63266 * 4 2 1 10 10 N 1.46905 * 109.46848 * 119.99293 * 2 1 3 11 11 C 1.46957 * 111.00229 * 306.73014 * 10 2 1 12 12 C 1.53054 * 109.36224 * 176.81370 * 11 10 2 13 13 N 1.46950 * 109.36676 * 58.40028 * 12 11 10 14 14 C 1.46901 * 111.00079 * 176.81114 * 13 12 11 15 15 C 1.50698 * 109.47018 * 60.03632 * 14 13 12 16 16 H 1.07998 * 120.00188 * 355.66182 * 15 14 13 17 17 C 1.37876 * 120.00080 * 175.67199 * 15 14 13 18 18 N 1.31518 * 120.00496 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99997 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47285 * 90.00262 * 19 17 15 21 21 H 1.48505 * 109.47284 * 210.00396 * 19 17 15 22 22 H 1.48500 * 109.47004 * 330.00394 * 19 17 15 23 23 C 1.46957 * 110.88114 * 300.67860 * 13 12 11 24 24 C 1.46964 * 110.99949 * 182.92569 * 10 2 1 25 25 H 1.09002 * 109.47442 * 300.00525 * 1 2 3 26 26 H 1.08995 * 109.47106 * 60.00708 * 1 2 3 27 27 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.44756 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.79680 * 179.72294 * 7 6 5 30 30 H 1.07998 * 120.44506 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.48692 * 296.77469 * 11 10 2 32 32 H 1.08996 * 109.48693 * 56.84230 * 11 10 2 33 33 H 1.08999 * 109.48507 * 298.42980 * 12 11 10 34 34 H 1.09002 * 109.50215 * 178.37949 * 12 11 10 35 35 H 1.09000 * 109.47400 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.46998 * 300.03898 * 14 13 12 37 37 H 0.96998 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.48703 * 299.35293 * 23 13 12 39 39 H 1.09001 * 109.49146 * 179.28901 * 23 13 12 40 40 H 1.09001 * 109.48757 * 303.16227 * 24 10 2 41 41 H 1.09003 * 109.48513 * 63.20427 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.4655 0.0023 -2.2508 6 6 2.9143 -0.5868 -3.3474 7 6 2.9252 -1.9712 -3.4128 8 6 2.4618 -2.6864 -2.3197 9 7 2.0273 -2.0282 -1.2571 10 7 2.0196 -0.6924 1.1996 11 6 1.4216 -0.1250 2.4162 12 6 1.8944 -0.9229 3.6337 13 7 3.3616 -0.8821 3.7032 14 6 3.8513 -1.5745 4.9027 15 6 3.4099 -3.0150 4.8666 16 1 2.7660 -3.3627 4.0723 17 6 3.8279 -3.8889 5.8477 18 7 3.4423 -5.1459 5.8165 19 14 4.9419 -3.2876 7.2213 20 1 4.1134 -2.8026 8.3542 21 1 5.8061 -4.4039 7.6823 22 1 5.7920 -2.1783 6.7193 23 6 3.9597 -1.4495 2.4866 24 6 3.4870 -0.6517 1.2691 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.2683 0.0032 -4.1799 29 1 3.2815 -2.4803 -4.2962 30 1 2.4550 -3.7662 -2.3353 31 1 1.7292 0.9154 2.5214 32 1 0.3351 -0.1780 2.3461 33 1 1.5633 -1.9573 3.5414 34 1 1.4750 -0.4863 4.5401 35 1 4.9400 -1.5289 4.9296 36 1 3.4452 -1.0923 5.7918 37 1 3.7366 -5.7608 6.5065 38 1 3.6521 -2.4899 2.3814 39 1 5.0461 -1.3965 2.5566 40 1 3.9063 -1.0886 0.3628 41 1 3.8181 0.3828 1.3610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930117060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = 49.016013 kcal Electronic energy + Delta-G solvation = -21816.364915 eV Core-core repulsion = 18730.883480 eV Total energy + Delta-G solvation = -3085.481435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07237 -40.23555 -37.38451 -34.72079 -34.62636 -33.41142 -32.17990 -31.18554 -29.44935 -26.80481 -25.74665 -25.38238 -24.05193 -23.34620 -21.94368 -20.68306 -18.91149 -18.46787 -18.05282 -17.20191 -16.38564 -16.30019 -16.01182 -15.88310 -15.67843 -15.49441 -15.29289 -14.67814 -14.39788 -14.29219 -14.14779 -13.77870 -13.37251 -13.07872 -12.84115 -12.72046 -12.50096 -12.24707 -12.15123 -11.99289 -11.85581 -11.78436 -11.68920 -11.47925 -11.37731 -10.78147 -10.41753 -10.10680 -9.28328 -9.00377 -8.29572 -6.35095 -0.04815 0.22440 1.36093 1.37564 1.49374 2.34762 2.59170 2.86646 2.98245 3.04697 3.29046 3.46136 3.79330 3.91401 4.01339 4.14626 4.19736 4.24495 4.28595 4.38515 4.44842 4.49843 4.52611 4.64500 4.73872 4.75353 4.89737 4.91859 5.00318 5.01915 5.09870 5.14355 5.22045 5.26558 5.48641 5.51559 5.99033 6.02049 6.13971 6.19972 6.35282 6.38156 6.72238 7.22170 7.31311 8.86947 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025993 B = 0.004387 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.954226 B = 6381.106889 C = 6818.122959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.150 3.850 3 H 0.068 0.932 4 C 0.310 3.690 5 N -0.539 5.539 6 C 0.136 3.864 7 C -0.217 4.217 8 C 0.125 3.875 9 N -0.521 5.521 10 N -0.533 5.533 11 C 0.068 3.932 12 C 0.064 3.936 13 N -0.529 5.529 14 C 0.159 3.841 15 C -0.548 4.548 16 H 0.032 0.968 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.951 3.049 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.246 1.246 23 C 0.072 3.928 24 C 0.084 3.916 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.203 0.797 29 H 0.186 0.814 30 H 0.184 0.816 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.014 0.986 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.012 0.988 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 11.841 -18.419 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.253 5.253 6 C -0.029 4.029 7 C -0.238 4.238 8 C -0.041 4.041 9 N -0.235 5.235 10 N -0.259 5.259 11 C -0.059 4.059 12 C -0.065 4.065 13 N -0.252 5.252 14 C 0.031 3.969 15 C -0.586 4.586 16 H 0.050 0.950 17 C -0.188 4.188 18 N -0.589 5.589 19 Si 0.774 3.226 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.057 4.057 24 C -0.044 4.044 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.203 0.797 30 H 0.200 0.800 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.470 12.161 -17.528 21.477 hybrid contribution 0.792 -1.276 -0.004 1.502 sum -1.678 10.885 -17.533 20.705 Atomic orbital electron populations 1.21829 0.91158 1.02749 1.03456 1.20274 0.97004 0.94005 0.84672 0.91382 1.22960 0.91811 0.86985 0.94012 1.68201 1.12580 1.42500 1.02059 1.23881 0.90541 0.93521 0.94986 1.23301 1.01967 0.96496 1.02041 1.23851 0.89880 1.02428 0.87901 1.68325 1.16319 1.10494 1.28324 1.61960 1.06386 1.55719 1.01816 1.22243 1.00018 0.96269 0.87418 1.21994 0.88341 0.98220 0.97899 1.62669 1.06910 1.53117 1.02502 1.20065 0.95830 0.90800 0.90169 1.21889 1.30604 0.95573 1.10570 0.94992 1.25944 0.97522 0.94623 1.00675 1.70097 1.47289 1.05474 1.36066 0.85656 0.79276 0.78579 0.79057 1.18960 1.21094 1.16951 1.21838 0.98298 0.95920 0.89663 1.21865 0.87838 0.98304 0.96432 0.89602 0.90962 0.92644 0.78007 0.79713 0.79952 0.93120 0.88198 0.96753 0.90379 0.95115 0.94874 0.92575 0.96931 0.91411 0.92581 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.72 71.98 0.63 -2.46 16 2 C 0.15 4.14 2.48 44.17 0.11 4.25 16 3 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 4 C 0.31 8.78 5.24 138.75 0.73 9.51 16 5 N -0.54 -13.27 10.32 -187.85 -1.94 -15.21 16 6 C 0.14 2.31 11.30 84.70 0.96 3.26 16 7 C -0.22 -3.26 10.17 22.44 0.23 -3.03 16 8 C 0.12 2.71 11.30 84.70 0.96 3.67 16 9 N -0.52 -15.60 9.91 -187.85 -1.86 -17.47 16 10 N -0.53 -17.64 4.33 -874.85 -3.79 -21.43 16 11 C 0.07 2.12 5.15 86.31 0.44 2.57 16 12 C 0.06 2.58 5.25 86.31 0.45 3.03 16 13 N -0.53 -22.84 4.92 -900.31 -4.43 -27.27 16 14 C 0.16 7.78 4.23 85.56 0.36 8.14 16 15 C -0.55 -32.05 8.22 25.60 0.21 -31.84 16 16 H 0.03 2.13 6.06 -2.91 -0.02 2.11 16 17 C 0.01 0.60 5.47 84.65 0.46 1.06 16 18 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 19 Si 0.95 44.59 27.56 68.60 1.89 46.48 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.25 -10.73 6.42 99.48 0.64 -10.09 16 23 C 0.07 3.03 5.31 86.31 0.46 3.49 16 24 C 0.08 2.94 5.42 86.31 0.47 3.41 16 25 H 0.09 1.69 6.25 -2.39 -0.01 1.68 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 2.68 6.02 -2.39 -0.01 2.67 16 33 H 0.01 0.69 6.50 -2.39 -0.02 0.68 16 34 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.03 1.50 6.88 -2.39 -0.02 1.48 16 36 H 0.03 1.57 7.79 -2.39 -0.02 1.56 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.01 0.63 6.89 -2.39 -0.02 0.61 16 39 H 0.07 2.76 8.13 -2.39 -0.02 2.74 16 40 H 0.06 1.99 6.97 -2.39 -0.02 1.97 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.50 322.72 -2.42 -76.91 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.95 Total: 13.08 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.47 Total: 5.07 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -11.72 Total: -141.54 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.89 Total: 46.48 kcal Total: -74.50 -2.42 -76.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930117060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.931 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds