Wall clock time and date at job start Mon Mar 30 2020 01:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 116.99900 * 2 1 4 4 C 1.39142 * 120.47338 * 179.97438 * 3 2 1 5 5 C 1.38535 * 118.37111 * 179.75386 * 4 3 2 6 6 C 1.38255 * 119.22178 * 0.53150 * 5 4 3 7 7 C 1.50705 * 119.55395 * 179.73396 * 6 5 4 8 8 H 1.08997 * 110.01241 * 351.76535 * 7 6 5 9 9 C 1.54317 * 109.88361 * 230.65308 * 7 6 5 10 10 C 1.55142 * 103.01901 * 218.30976 * 9 7 6 11 11 C 1.54902 * 101.65339 * 35.65458 * 10 9 7 12 12 N 1.47435 * 109.88941 * 112.88775 * 7 6 5 13 13 C 1.46902 * 111.00272 * 356.14558 * 12 7 6 14 14 C 1.52998 * 109.47386 * 194.35264 * 13 12 7 15 15 C 1.50699 * 109.47250 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99921 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99682 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47291 * 90.00142 * 19 17 15 21 21 H 1.48500 * 109.46763 * 209.99533 * 19 17 15 22 22 H 1.48497 * 109.47345 * 329.99892 * 19 17 15 23 23 N 1.31841 * 120.88768 * 359.45879 * 6 5 4 24 24 C 1.31846 * 121.78134 * 0.27062 * 23 6 5 25 25 H 1.08999 * 109.47182 * 60.00198 * 1 2 3 26 26 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47616 * 300.00219 * 1 2 3 28 28 H 1.08000 * 120.81149 * 0.02563 * 4 3 2 29 29 H 1.08000 * 120.38731 * 180.26196 * 5 4 3 30 30 H 1.08995 * 110.71478 * 336.69402 * 9 7 6 31 31 H 1.09009 * 110.70415 * 99.93205 * 9 7 6 32 32 H 1.09003 * 110.98993 * 277.56364 * 10 9 7 33 33 H 1.09000 * 110.99043 * 153.74698 * 10 9 7 34 34 H 1.08993 * 110.37779 * 204.09799 * 11 10 9 35 35 H 1.09007 * 110.46680 * 81.80596 * 11 10 9 36 36 H 1.09004 * 109.46726 * 314.34774 * 13 12 7 37 37 H 1.09001 * 109.47324 * 74.34967 * 13 12 7 38 38 H 1.09004 * 109.46788 * 299.99472 * 14 13 12 39 39 H 1.09003 * 109.47640 * 59.99484 * 14 13 12 40 40 H 0.97006 * 120.00258 * 180.02562 * 18 17 15 41 41 H 1.08003 * 119.65742 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0181 2.5519 -0.0047 6 6 3.2078 3.6721 0.0009 7 6 3.8343 5.0428 0.0013 8 1 4.9118 4.9603 0.1435 9 6 3.2202 5.9002 1.1278 10 6 3.1148 7.3057 0.4794 11 6 2.7666 6.9483 -0.9871 12 7 3.5474 5.7259 -1.2733 13 6 2.8207 4.8405 -2.1932 14 6 2.8531 5.4328 -3.6035 15 6 2.1081 4.5243 -4.5472 16 1 1.6570 3.6151 -4.1781 17 6 2.0024 4.8538 -5.8818 18 7 2.5512 5.9611 -6.3312 19 14 1.0796 3.7272 -7.0517 20 1 -0.3507 4.1241 -7.0962 21 1 1.6664 3.8378 -8.4114 22 1 1.1895 2.3242 -6.5777 23 7 1.8944 3.5574 0.0005 24 6 1.3001 2.3805 0.0000 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.0432 0.4030 0.0005 29 1 5.0931 2.6553 -0.0087 30 1 2.2334 5.5273 1.4019 31 1 3.8789 5.9248 1.9961 32 1 4.0662 7.8346 0.5371 33 1 2.3170 7.8890 0.9391 34 1 3.0662 7.7552 -1.6557 35 1 1.6996 6.7494 -1.0879 36 1 3.2929 3.8581 -2.2008 37 1 1.7863 4.7439 -1.8633 38 1 2.3809 6.4153 -3.5958 39 1 3.8875 5.5295 -3.9334 40 1 2.4766 6.1932 -7.2701 41 1 0.2214 2.3264 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934340542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:12 Heat of formation + Delta-G solvation = 6.068848 kcal Electronic energy + Delta-G solvation = -21843.915213 eV Core-core repulsion = 18724.278698 eV Total energy + Delta-G solvation = -3119.636515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85812 -39.06500 -37.37970 -33.56370 -32.34284 -31.72467 -31.29390 -28.37584 -28.01865 -27.12882 -24.35055 -23.54219 -22.64326 -21.41567 -20.45295 -19.40370 -18.13271 -17.05771 -16.45310 -15.90689 -15.86464 -15.23161 -14.75060 -14.42060 -14.21557 -14.07935 -13.76980 -13.49831 -13.08431 -12.57908 -12.40456 -12.30861 -12.01716 -11.95081 -11.50729 -11.35517 -11.04112 -10.90376 -10.84900 -10.67946 -10.48056 -10.44737 -9.81805 -9.50014 -9.29490 -9.28230 -9.06329 -8.28294 -8.26951 -7.58529 -5.93875 -3.95488 1.21906 1.38039 3.13175 3.33790 3.39717 3.43310 3.83194 4.38409 4.48277 4.69840 4.71888 4.77436 4.89481 4.99905 5.03847 5.09224 5.22449 5.32115 5.38731 5.41840 5.50662 5.62577 5.75064 5.84807 5.96374 6.04190 6.11492 6.16597 6.30232 6.35539 6.52874 6.55015 6.57290 6.74509 7.11815 7.19214 7.58400 7.59477 7.84686 7.99410 8.11631 8.17104 8.51997 9.11740 9.67326 11.17636 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.006881 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.258479 B = 4068.413268 C = 5925.909138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.068 3.932 4 C -0.107 4.107 5 C -0.124 4.124 6 C 0.094 3.906 7 C 0.122 3.878 8 H 0.093 0.907 9 C -0.129 4.129 10 C -0.128 4.128 11 C 0.048 3.952 12 N -0.513 5.513 13 C 0.059 3.941 14 C 0.030 3.970 15 C -0.517 4.517 16 H 0.050 0.950 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 N -0.435 5.435 24 C 0.025 3.975 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.021 0.979 40 H 0.260 0.740 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -6.581 17.173 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.020 3.980 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.044 4.044 7 C 0.013 3.987 8 H 0.111 0.889 9 C -0.168 4.168 10 C -0.166 4.166 11 C -0.080 4.080 12 N -0.237 5.237 13 C -0.068 4.068 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.068 0.932 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.145 5.145 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.462 -5.803 16.749 17.732 hybrid contribution -1.071 -1.626 -0.559 2.025 sum -1.534 -7.428 16.190 17.879 Atomic orbital electron populations 1.23091 0.78195 1.04070 1.01699 1.86041 1.21524 1.26312 1.88854 1.20022 0.93259 0.85619 0.99073 1.20846 0.91613 0.98716 1.02193 1.21824 1.01450 0.91641 0.99563 1.21475 0.89210 0.96341 0.97422 1.21498 0.98669 0.87412 0.91144 0.88942 1.22811 1.01552 0.95291 0.97155 1.22700 1.01539 0.96356 0.95995 1.23012 0.96640 0.93418 0.94908 1.64063 1.45134 1.05834 1.08684 1.22665 0.95037 0.94581 0.94515 1.19049 0.97423 0.95895 0.88358 1.21171 1.34000 1.07127 0.93276 0.93206 1.24970 0.95795 0.95249 0.98223 1.69972 1.44771 1.23677 1.14828 0.86649 0.79997 0.81206 0.80475 1.20730 1.21149 1.20012 1.67374 1.11638 1.26196 1.09273 1.22832 1.00332 0.87168 1.03066 0.92172 0.88142 0.92602 0.84270 0.84122 0.90519 0.91515 0.91054 0.91331 0.90349 0.93389 0.93032 0.94162 0.96678 0.96046 0.93079 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 101.05 0.99 1.22 16 2 O -0.32 -4.07 10.51 -19.48 -0.20 -4.28 16 3 C 0.07 0.97 6.71 -39.07 -0.26 0.70 16 4 C -0.11 -1.46 10.13 -39.14 -0.40 -1.86 16 5 C -0.12 -1.75 9.49 -39.47 -0.37 -2.12 16 6 C 0.09 1.51 3.45 -82.58 -0.29 1.23 16 7 C 0.12 1.91 3.71 -67.88 -0.25 1.66 16 8 H 0.09 1.30 7.91 -51.93 -0.41 0.89 16 9 C -0.13 -1.74 6.42 -24.91 -0.16 -1.90 16 10 C -0.13 -1.73 7.08 -24.59 -0.17 -1.90 16 11 C 0.05 0.85 6.00 -2.30 -0.01 0.83 16 12 N -0.51 -9.90 5.13 -224.73 -1.15 -11.05 16 13 C 0.06 1.34 3.54 -3.82 -0.01 1.33 16 14 C 0.03 0.83 5.07 -27.88 -0.14 0.69 16 15 C -0.52 -15.32 9.11 -34.44 -0.31 -15.64 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 19 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 N -0.43 -7.34 7.41 -9.35 -0.07 -7.41 16 24 C 0.02 0.37 10.22 -17.37 -0.18 0.19 16 25 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 28 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.14 1.61 7.97 -52.49 -0.42 1.20 16 30 H 0.08 1.11 7.22 -51.93 -0.38 0.73 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.05 0.91 7.55 -51.92 -0.39 0.52 16 36 H 0.05 1.21 6.52 -51.93 -0.34 0.87 16 37 H 0.04 0.95 6.26 -51.93 -0.33 0.63 16 38 H 0.01 0.43 7.65 -51.93 -0.40 0.04 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.15 1.95 6.32 -52.48 -0.33 1.61 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -33.42 329.12 -8.71 -42.13 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.29 Total: -0.84 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.67 Total: -13.92 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.49 Total: -45.36 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.28 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.42 -8.71 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934340542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.199 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds